Wall clock time and date at job start Tue Mar 31 2020 05:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47256 * 2 1 4 4 H 1.09000 * 109.46952 * 305.76514 * 3 2 1 5 5 C 1.50695 * 109.47645 * 185.76402 * 3 2 1 6 6 O 1.20823 * 120.00402 * 240.27563 * 5 3 2 7 7 O 1.34227 * 119.99710 * 59.99532 * 5 3 2 8 8 C 1.45208 * 117.00278 * 180.02562 * 7 5 3 9 9 C 1.50703 * 109.47325 * 65.76209 * 3 2 1 10 10 O 1.21287 * 119.99872 * 24.63804 * 9 3 2 11 11 N 1.34772 * 120.00180 * 204.63755 * 9 3 2 12 12 C 1.46922 * 120.63353 * 4.94220 * 11 9 3 13 13 C 1.53194 * 108.77715 * 233.58746 * 12 11 9 14 14 C 1.53038 * 109.30983 * 305.36518 * 13 12 11 15 15 C 1.53035 * 109.54189 * 61.36190 * 14 13 12 16 16 H 1.09003 * 109.49787 * 58.62276 * 15 14 13 17 17 C 1.50700 * 109.49757 * 178.68034 * 15 14 13 18 18 H 1.08004 * 119.99900 * 120.00393 * 17 15 14 19 19 C 1.37879 * 120.00617 * 300.00207 * 17 15 14 20 20 N 1.31515 * 119.99478 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00175 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47577 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46991 * 120.00105 * 21 19 17 24 24 H 1.48495 * 109.47433 * 239.99929 * 21 19 17 25 25 C 1.46931 * 120.63067 * 184.65972 * 11 9 3 26 26 H 1.09001 * 109.46766 * 174.95046 * 1 2 3 27 27 H 1.09001 * 109.47000 * 294.94271 * 1 2 3 28 28 H 1.08992 * 109.46971 * 54.94631 * 1 2 3 29 29 H 1.08999 * 109.47321 * 240.00142 * 2 1 3 30 30 H 1.09007 * 109.47289 * 119.99576 * 2 1 3 31 31 H 1.08997 * 109.47100 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47018 * 300.01019 * 8 7 5 33 33 H 1.09002 * 109.46269 * 60.00504 * 8 7 5 34 34 H 1.09003 * 109.58631 * 353.37344 * 12 11 9 35 35 H 1.09001 * 109.59071 * 113.79804 * 12 11 9 36 36 H 1.09005 * 109.49745 * 65.30864 * 13 12 11 37 37 H 1.09002 * 109.49863 * 185.40993 * 13 12 11 38 38 H 1.09005 * 109.46163 * 181.38765 * 14 13 12 39 39 H 1.09007 * 109.46025 * 301.34002 * 14 13 12 40 40 H 0.97003 * 119.99706 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.59022 * 246.20090 * 25 11 9 42 42 H 1.09000 * 109.58709 * 6.63136 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5949 1.9852 -0.8339 5 6 3.5402 1.4450 -0.1427 6 8 4.2285 1.9341 0.7215 7 8 4.1121 0.8988 -1.2273 8 6 5.5620 0.9364 -1.2977 9 6 1.6576 2.1106 1.2956 10 8 1.4569 1.4412 2.2869 11 7 1.5386 3.4518 1.3527 12 6 1.6721 4.2676 0.1381 13 6 2.7302 5.3479 0.3835 14 6 2.3600 6.1434 1.6374 15 6 2.3349 5.2078 2.8483 16 1 3.3122 4.7400 2.9669 17 6 2.0019 5.9980 4.0876 18 1 1.1226 5.7523 4.6646 19 6 2.8197 7.0345 4.4849 20 7 3.8902 7.3339 3.7820 21 14 2.4065 8.0142 6.0206 22 1 1.1596 7.4822 6.6268 23 1 3.5197 7.8975 6.9966 24 1 2.2122 9.4415 5.6599 25 6 1.2667 4.1256 2.6298 26 1 -0.3633 -1.0237 -0.0905 27 1 -0.3633 0.4334 0.9318 28 1 -0.3633 0.5902 -0.8412 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 5.8932 0.4634 -2.2221 32 1 5.8999 1.9725 -1.2787 33 1 5.9810 0.4019 -0.4451 34 1 1.9815 3.6357 -0.6944 35 1 0.7164 4.7381 -0.0931 36 1 3.7037 4.8783 0.5250 37 1 2.7708 6.0191 -0.4744 38 1 3.0981 6.9287 1.8005 39 1 1.3756 6.5925 1.5051 40 1 4.4658 8.0628 4.0617 41 1 0.2787 4.5846 2.5977 42 1 1.3086 3.3998 3.4420 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904272.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:38 Heat of formation + Delta-G solvation = -132.061923 kcal Electronic energy + Delta-G solvation = -23849.959115 eV Core-core repulsion = 20408.846609 eV Total energy + Delta-G solvation = -3441.112506 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.94404 -39.39457 -36.99353 -36.39820 -34.52772 -33.46222 -31.35593 -30.32559 -29.09700 -27.35054 -25.10615 -24.63851 -22.39541 -21.83351 -21.55897 -19.53276 -18.35758 -17.84689 -17.19841 -16.67996 -16.31057 -16.03593 -15.26631 -14.72010 -14.33718 -14.11772 -13.63865 -13.58557 -13.48415 -13.17404 -12.85618 -12.71574 -12.46071 -12.23324 -12.05372 -12.00564 -11.82814 -11.38305 -11.01241 -10.96873 -10.85835 -10.79587 -10.67405 -10.35678 -10.27166 -9.93345 -9.81667 -9.50739 -9.31061 -8.79332 -8.36384 -7.90458 -5.98840 -4.05981 2.15665 2.28270 3.26047 3.30581 3.38244 3.41195 3.46936 4.39922 4.45004 4.68055 4.75393 4.86963 5.02343 5.11194 5.26522 5.28281 5.31952 5.38333 5.46224 5.59860 5.62038 5.76491 5.86091 6.07332 6.10195 6.21515 6.27520 6.34821 6.41113 6.49097 6.66768 6.81960 6.94832 7.19163 7.35041 7.69173 7.72464 7.91192 8.01294 8.10420 8.39042 8.55718 8.97928 9.58655 11.06736 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.004929 C = 0.004485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.675822 B = 5678.803611 C = 6241.814228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.103 4.103 3 C -0.106 4.106 4 H 0.126 0.874 5 C 0.468 3.532 6 O -0.477 6.477 7 O -0.359 6.359 8 C 0.035 3.965 9 C 0.532 3.468 10 O -0.535 6.535 11 N -0.593 5.593 12 C 0.107 3.893 13 C -0.135 4.135 14 C -0.111 4.111 15 C 0.040 3.960 16 H 0.033 0.967 17 C -0.513 4.513 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.119 3.881 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.057 0.943 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.390 -11.090 -14.445 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.141 4.141 3 C -0.128 4.128 4 H 0.143 0.857 5 C 0.308 3.692 6 O -0.361 6.361 7 O -0.276 6.276 8 C -0.059 4.059 9 C 0.317 3.683 10 O -0.412 6.412 11 N -0.324 5.324 12 C -0.016 4.016 13 C -0.173 4.173 14 C -0.149 4.149 15 C 0.021 3.979 16 H 0.051 0.949 17 C -0.551 4.551 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.001 4.001 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.104 -11.149 -13.636 17.739 hybrid contribution 0.199 0.801 0.662 1.058 sum -1.905 -10.348 -12.974 16.704 Atomic orbital electron populations 1.21788 0.94343 1.02194 1.02628 1.21372 0.97273 0.91663 1.03791 1.21430 0.89647 1.01337 1.00424 0.85656 1.23083 0.91017 0.75298 0.79795 1.90816 1.64469 1.40644 1.40204 1.86458 1.24438 1.73416 1.43294 1.23290 0.76236 1.03153 1.03193 1.19482 0.77816 0.82499 0.88523 1.90662 1.51073 1.63320 1.36170 1.48216 1.68734 1.04877 1.10604 1.21808 1.00085 0.93676 0.86074 1.22004 0.98130 0.96964 1.00217 1.21618 1.01003 1.00064 0.92190 1.19062 0.94007 0.91105 0.93764 0.94935 1.21115 1.09946 1.15168 1.08911 0.92417 1.24942 0.94865 0.97193 0.96856 1.69894 1.14227 1.29914 1.38683 0.86522 0.78420 0.79762 0.83217 1.19721 1.21053 1.21071 1.22127 0.99587 0.95746 0.82664 0.91991 0.91632 0.92659 0.90154 0.90021 0.88066 0.91630 0.91806 0.91909 0.91430 0.92121 0.92531 0.88590 0.94582 0.93067 0.92515 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.63 37.16 0.36 -1.26 16 2 C -0.10 -1.22 5.06 -26.73 -0.14 -1.35 16 3 C -0.11 -1.49 1.81 -92.92 -0.17 -1.66 16 4 H 0.13 1.38 6.28 -51.93 -0.33 1.06 16 5 C 0.47 7.20 7.08 36.00 0.25 7.45 16 6 O -0.48 -9.39 15.78 -18.75 -0.30 -9.69 16 7 O -0.36 -4.43 10.36 -39.25 -0.41 -4.84 16 8 C 0.03 0.34 10.56 101.05 1.07 1.41 16 9 C 0.53 9.90 5.38 -10.99 -0.06 9.84 16 10 O -0.53 -11.61 14.71 5.55 0.08 -11.53 16 11 N -0.59 -11.37 2.97 -172.50 -0.51 -11.88 16 12 C 0.11 1.71 6.27 -3.71 -0.02 1.68 16 13 C -0.13 -2.52 6.08 -26.61 -0.16 -2.68 16 14 C -0.11 -2.55 4.96 -26.69 -0.13 -2.68 16 15 C 0.04 1.01 2.27 -91.43 -0.21 0.80 16 16 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 17 C -0.51 -14.15 8.56 -34.44 -0.29 -14.45 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.48 11.31 55.43 0.63 -24.85 16 21 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.12 2.65 5.67 -3.48 -0.02 2.63 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.86 7.05 -51.93 -0.37 0.49 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.76 7.98 -51.93 -0.41 0.34 16 30 H 0.08 1.11 7.66 -51.92 -0.40 0.71 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 34 H 0.06 0.82 5.36 -51.93 -0.28 0.54 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.10 2.50 6.04 -51.93 -0.31 2.19 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.90 7.03 -51.93 -0.37 1.53 16 LS Contribution 337.60 15.07 5.09 5.09 Total: -1.00 -32.82 337.60 -6.71 -39.53 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.65 Total: 0.38 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 0.38 Total: 1.40 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.12 Total: -36.74 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.62 Total: -26.05 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.82 -6.71 -39.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904272.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.532 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds