Wall clock time and date at job start Tue Mar 31 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47056 * 2 1 4 4 H 1.09002 * 109.47159 * 306.65931 * 3 2 1 5 5 C 1.50699 * 109.47136 * 66.65894 * 3 2 1 6 6 O 1.20831 * 119.99699 * 119.99931 * 5 3 2 7 7 O 1.34226 * 120.00230 * 300.00016 * 5 3 2 8 8 C 1.45202 * 116.99881 * 179.97438 * 7 5 3 9 9 C 1.50696 * 109.47204 * 186.66157 * 3 2 1 10 10 O 1.21284 * 120.00218 * 272.90794 * 9 3 2 11 11 N 1.34779 * 120.00063 * 92.90207 * 9 3 2 12 12 C 1.46926 * 120.63254 * 174.65160 * 11 9 3 13 13 C 1.53191 * 108.77938 * 233.63278 * 12 11 9 14 14 C 1.53038 * 109.31215 * 305.36683 * 13 12 11 15 15 C 1.53043 * 109.54064 * 61.36284 * 14 13 12 16 16 H 1.09000 * 109.52394 * 58.60317 * 15 14 13 17 17 C 1.50699 * 109.49881 * 178.68329 * 15 14 13 18 18 H 1.08007 * 119.99749 * 119.83775 * 17 15 14 19 19 C 1.37873 * 120.00098 * 300.11674 * 17 15 14 20 20 N 1.31513 * 119.99666 * 359.72042 * 19 17 15 21 21 Si 1.86795 * 119.99906 * 179.72452 * 19 17 15 22 22 H 1.48508 * 109.47081 * 90.00116 * 21 19 17 23 23 H 1.48502 * 109.47292 * 209.99597 * 21 19 17 24 24 H 1.48495 * 109.47524 * 329.99866 * 21 19 17 25 25 C 1.46927 * 120.62948 * 354.67839 * 11 9 3 26 26 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46941 * 299.99692 * 1 2 3 28 28 H 1.08991 * 109.47455 * 60.00169 * 1 2 3 29 29 H 1.09004 * 109.46622 * 239.99864 * 2 1 3 30 30 H 1.08995 * 109.47076 * 120.00163 * 2 1 3 31 31 H 1.09001 * 109.47312 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.47138 * 300.00260 * 8 7 5 33 33 H 1.09005 * 109.47187 * 60.00130 * 8 7 5 34 34 H 1.09002 * 109.58313 * 353.42377 * 12 11 9 35 35 H 1.09006 * 109.58624 * 113.84020 * 12 11 9 36 36 H 1.08996 * 109.49296 * 65.31696 * 13 12 11 37 37 H 1.09000 * 109.49922 * 185.41351 * 13 12 11 38 38 H 1.09002 * 109.46080 * 301.34263 * 14 13 12 39 39 H 1.08996 * 109.46440 * 181.38822 * 14 13 12 40 40 H 0.97003 * 119.99767 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.58928 * 6.58111 * 25 11 9 42 42 H 1.08999 * 109.70405 * 246.22354 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5826 1.9895 -0.8244 5 6 1.6767 2.1037 1.3045 6 8 2.5452 2.5334 2.0264 7 8 0.3885 2.2152 1.6646 8 6 0.1127 2.8629 2.9345 9 6 3.5379 1.4457 -0.1648 10 8 4.2554 1.3532 0.8087 11 7 4.0804 1.5512 -1.3941 12 6 5.5349 1.6735 -1.5625 13 6 5.8304 2.9132 -2.4125 14 6 5.0509 2.8237 -3.7264 15 6 3.5499 2.7881 -3.4296 16 1 3.2665 3.6839 -2.8769 17 6 2.7822 2.7326 -4.7252 18 1 2.1302 1.8965 -4.9311 19 6 2.9165 3.7462 -5.6501 20 7 3.7104 4.7642 -5.3993 21 14 1.9708 3.6735 -7.2593 22 1 0.6540 4.3391 -7.0901 23 1 2.7439 4.3685 -8.3197 24 1 1.7624 2.2554 -7.6475 25 6 3.2285 1.5469 -2.5912 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 -0.9638 2.8869 3.1040 32 1 0.5944 2.3063 3.7385 33 1 0.5005 3.8815 2.9147 34 1 6.0082 1.7783 -0.5863 35 1 5.9205 0.7859 -2.0643 36 1 5.5261 3.8077 -1.8691 37 1 6.8983 2.9621 -2.6256 38 1 5.3376 1.9161 -4.2576 39 1 5.2785 3.6927 -4.3436 40 1 3.8046 5.4775 -6.0498 41 1 2.1801 1.5684 -2.2937 42 1 3.4236 0.6492 -3.1778 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597904273.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:40 Heat of formation + Delta-G solvation = -130.610989 kcal Electronic energy + Delta-G solvation = -23720.805641 eV Core-core repulsion = 20279.756052 eV Total energy + Delta-G solvation = -3441.049589 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84925 -39.36547 -36.96280 -36.11164 -34.86149 -33.34715 -31.59465 -30.18437 -28.76900 -27.48240 -25.13599 -24.50721 -22.73319 -22.02857 -21.04971 -19.73424 -18.32833 -17.85332 -16.86502 -16.62051 -16.23422 -15.93711 -15.22875 -14.78427 -14.48517 -14.11153 -13.64320 -13.52546 -13.29460 -13.24785 -12.86204 -12.73689 -12.45328 -12.22801 -12.09118 -11.84858 -11.84135 -11.23486 -11.06205 -11.00366 -10.91960 -10.79174 -10.62427 -10.37274 -10.14547 -10.00951 -9.80464 -9.64590 -9.18203 -8.90968 -8.46102 -7.94512 -6.09117 -4.18053 2.33003 2.46323 3.07203 3.24134 3.31949 3.33489 3.54399 4.34060 4.53454 4.79031 4.84508 5.05691 5.07594 5.15142 5.20746 5.32797 5.41987 5.46219 5.66285 5.70189 5.74194 5.84232 5.91215 6.02884 6.06663 6.19526 6.28289 6.29852 6.42230 6.49678 6.53325 6.74392 6.93200 7.12569 7.29014 7.61166 7.82636 7.85579 7.87678 8.01288 8.27819 8.56821 8.85637 9.47874 10.96034 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017313 B = 0.005225 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.938707 B = 5357.075716 C = 6099.198210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.105 4.105 3 C -0.108 4.108 4 H 0.135 0.865 5 C 0.471 3.529 6 O -0.474 6.474 7 O -0.354 6.354 8 C 0.033 3.967 9 C 0.522 3.478 10 O -0.528 6.528 11 N -0.600 5.600 12 C 0.117 3.883 13 C -0.135 4.135 14 C -0.112 4.112 15 C 0.038 3.962 16 H 0.030 0.970 17 C -0.519 4.519 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.106 3.894 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 -6.836 9.418 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.143 4.143 3 C -0.129 4.129 4 H 0.153 0.847 5 C 0.311 3.689 6 O -0.358 6.358 7 O -0.271 6.271 8 C -0.061 4.061 9 C 0.307 3.693 10 O -0.404 6.404 11 N -0.333 5.333 12 C -0.005 4.005 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.019 3.981 16 H 0.048 0.952 17 C -0.557 4.557 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.524 5.524 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.015 4.015 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.067 -6.570 10.109 13.077 hybrid contribution -0.478 0.268 -0.924 1.074 sum -5.545 -6.301 9.185 12.442 Atomic orbital electron populations 1.21987 0.93872 1.02135 1.03747 1.21388 0.97474 0.91622 1.03852 1.21295 0.96218 1.00117 0.95315 0.84732 1.22988 0.80811 0.77370 0.87740 1.90759 1.49221 1.43493 1.52359 1.86545 1.28386 1.72546 1.39643 1.23248 1.02055 0.97645 0.83113 1.19636 0.88633 0.77618 0.83405 1.90711 1.62137 1.49251 1.38306 1.48209 1.08142 1.71020 1.05920 1.21587 0.79714 0.98539 1.00644 1.22008 0.99798 0.96793 0.98700 1.21622 0.96434 1.02613 0.94330 1.19001 0.93198 0.91725 0.94208 0.95175 1.21041 1.26199 1.06779 1.01728 0.92369 1.24940 0.95163 0.95252 0.98345 1.69877 1.37060 1.09824 1.35643 0.86590 0.79887 0.78199 0.83296 1.20659 1.21248 1.19847 1.22253 0.92895 1.01637 0.84752 0.92277 0.90654 0.91846 0.89750 0.90982 0.88187 0.92053 0.91947 0.90238 0.92119 0.92450 0.92402 0.94495 0.88641 0.92855 0.91036 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.60 37.16 0.36 -1.28 16 2 C -0.11 -1.29 5.36 -26.73 -0.14 -1.43 16 3 C -0.11 -1.65 1.89 -92.93 -0.18 -1.83 16 4 H 0.14 1.97 6.04 -51.93 -0.31 1.66 16 5 C 0.47 7.67 7.18 36.01 0.26 7.93 16 6 O -0.47 -9.45 14.48 -26.41 -0.38 -9.83 16 7 O -0.35 -4.64 7.79 -39.25 -0.31 -4.94 16 8 C 0.03 0.34 10.56 101.05 1.07 1.40 16 9 C 0.52 9.78 6.56 -10.99 -0.07 9.70 16 10 O -0.53 -11.55 14.46 -17.54 -0.25 -11.80 16 11 N -0.60 -11.08 2.97 -172.76 -0.51 -11.59 16 12 C 0.12 2.10 6.42 -3.71 -0.02 2.08 16 13 C -0.13 -2.56 6.08 -26.61 -0.16 -2.72 16 14 C -0.11 -2.46 4.96 -26.69 -0.13 -2.60 16 15 C 0.04 0.86 2.25 -91.65 -0.21 0.65 16 16 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.52 -12.96 8.57 -34.44 -0.30 -13.26 16 18 H 0.06 1.40 7.74 -52.48 -0.41 1.00 16 19 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -24.01 11.31 55.43 0.63 -23.39 16 21 Si 0.89 20.03 29.54 -169.99 -5.02 15.01 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 C 0.11 1.97 5.53 -3.71 -0.02 1.95 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.79 5.52 -51.93 -0.29 0.50 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 34 H 0.08 1.45 7.04 -51.93 -0.37 1.09 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 2.39 6.04 -51.93 -0.31 2.08 16 40 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 41 H 0.07 1.20 5.37 -51.93 -0.28 0.92 16 42 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 333.99 15.07 5.03 5.03 Total: -1.00 -30.83 333.99 -7.05 -37.89 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.59 Total: 1.44 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 0.36 Total: 2.18 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.11 Total: -34.98 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.94 Total: -26.57 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.83 -7.05 -37.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597904273.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.723 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds