Wall clock time and date at job start Tue Mar 31 2020 06:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34235 * 117.00032 * 2 1 4 4 O 1.20830 * 119.99683 * 359.97438 * 3 2 1 5 5 C 1.50692 * 120.00134 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47281 * 179.97438 * 5 3 2 7 7 H 1.09005 * 109.46738 * 305.00603 * 6 5 3 8 8 C 1.53003 * 109.46766 * 64.99803 * 6 5 3 9 9 C 1.50696 * 109.47252 * 184.99834 * 6 5 3 10 10 O 1.21279 * 120.00238 * 334.65433 * 9 6 5 11 11 N 1.34780 * 119.99980 * 154.64673 * 9 6 5 12 12 C 1.46932 * 120.62621 * 5.27079 * 11 9 6 13 13 C 1.53196 * 108.77070 * 126.36952 * 12 11 9 14 14 C 1.53039 * 109.31323 * 54.63794 * 13 12 11 15 15 C 1.53042 * 109.53551 * 298.63004 * 14 13 12 16 16 H 1.09006 * 109.49633 * 301.38762 * 15 14 13 17 17 C 1.50696 * 109.49949 * 181.31815 * 15 14 13 18 18 H 1.07995 * 120.00136 * 240.00091 * 17 15 14 19 19 C 1.37888 * 119.99776 * 60.00142 * 17 15 14 20 20 N 1.31510 * 120.00045 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 119.99621 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47353 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47080 * 120.00244 * 21 19 17 24 24 H 1.48505 * 109.46980 * 239.99691 * 21 19 17 25 25 C 1.46920 * 120.63436 * 184.99316 * 11 9 6 26 26 H 1.08999 * 109.46937 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47484 * 299.99911 * 1 2 3 28 28 H 1.08998 * 109.47320 * 60.00191 * 1 2 3 29 29 H 1.08999 * 109.47075 * 60.00213 * 5 3 2 30 30 H 1.09000 * 109.47193 * 300.00181 * 5 3 2 31 31 H 1.08995 * 109.47004 * 54.75813 * 8 6 5 32 32 H 1.09000 * 109.46789 * 174.75415 * 8 6 5 33 33 H 1.08991 * 109.47473 * 294.75408 * 8 6 5 34 34 H 1.08996 * 109.58668 * 246.15204 * 12 11 9 35 35 H 1.08996 * 109.59200 * 6.58173 * 12 11 9 36 36 H 1.09005 * 109.49322 * 174.58181 * 13 12 11 37 37 H 1.08994 * 109.49434 * 294.68018 * 13 12 11 38 38 H 1.08996 * 109.46374 * 58.65310 * 14 13 12 39 39 H 1.09002 * 109.45871 * 178.63199 * 14 13 12 40 40 H 0.96994 * 120.00085 * 180.02562 * 20 19 17 41 41 H 1.09008 * 109.58195 * 353.41945 * 25 11 9 42 42 H 1.08998 * 109.58875 * 113.84268 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0001 2.7422 -0.0002 7 1 3.5381 3.2572 -0.8425 8 6 3.5594 3.4049 1.3066 9 6 5.4998 2.8225 -0.1234 10 8 6.1893 1.8965 0.2480 11 7 6.0750 3.9235 -0.6465 12 6 5.2640 5.0983 -0.9943 13 6 5.8583 6.3297 -0.3033 14 6 7.3374 6.4545 -0.6756 15 6 8.0938 5.2159 -0.1897 16 1 7.9777 5.1191 0.8898 17 6 9.5557 5.3543 -0.5281 18 1 10.0330 4.6272 -1.1683 19 6 10.2840 6.4093 -0.0204 20 7 9.7029 7.2945 0.7596 21 14 12.0960 6.5812 -0.4404 22 1 12.5065 5.4639 -1.3283 23 1 12.3227 7.8744 -1.1342 24 1 12.8994 6.5417 0.8079 25 6 7.5256 3.9740 -0.8741 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9563 0.7807 -0.8892 30 1 3.9556 0.7810 0.8908 31 1 3.9454 2.8345 2.1514 32 1 3.9484 4.4223 1.3471 33 1 2.4708 3.4301 1.3522 34 1 5.2762 5.2440 -2.0744 35 1 4.2390 4.9482 -0.6553 36 1 5.3246 7.2226 -0.6290 37 1 5.7629 6.2220 0.7771 38 1 7.4337 6.5372 -1.7582 39 1 7.7567 7.3436 -0.2047 40 1 10.2151 8.0368 1.1165 41 1 7.9923 3.0821 -0.4559 42 1 7.7260 4.0261 -1.9443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907901.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:33 Heat of formation + Delta-G solvation = -136.645048 kcal Electronic energy + Delta-G solvation = -23059.113733 eV Core-core repulsion = 19617.802487 eV Total energy + Delta-G solvation = -3441.311246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83802 -39.73855 -37.09532 -36.66157 -34.33569 -33.36999 -31.33370 -30.28101 -29.11474 -27.12731 -25.36565 -24.99180 -23.09606 -21.70577 -21.03212 -19.53397 -18.30617 -17.79312 -17.18973 -16.70858 -16.39396 -15.92879 -15.33883 -14.88643 -14.61415 -14.21025 -13.84870 -13.53731 -13.30686 -13.26064 -12.85003 -12.68148 -12.56248 -12.24372 -12.12206 -12.00679 -11.86840 -11.26688 -11.20490 -11.00870 -11.00200 -10.82219 -10.70323 -10.54882 -10.29135 -9.95592 -9.81071 -9.46799 -9.24171 -8.81109 -8.39719 -7.91303 -6.02613 -4.09673 2.02199 2.45821 2.98818 3.28334 3.36591 3.40454 3.56061 4.40828 4.42207 4.71742 4.83468 4.84997 4.91413 4.93007 5.22200 5.26440 5.28816 5.43077 5.53284 5.56804 5.64416 5.76979 5.82991 5.96922 6.09850 6.14865 6.30810 6.33084 6.39663 6.48300 6.65694 6.80757 6.96498 7.16170 7.32853 7.55420 7.68779 7.90548 7.99519 8.07339 8.36453 8.59634 8.94291 9.55308 11.02947 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041607 B = 0.003464 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.796850 B = 8081.747055 C = 8443.669638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.505 6.505 5 C -0.096 4.096 6 C -0.099 4.099 7 H 0.100 0.900 8 C -0.150 4.150 9 C 0.515 3.485 10 O -0.551 6.551 11 N -0.599 5.599 12 C 0.105 3.895 13 C -0.134 4.134 14 C -0.113 4.113 15 C 0.039 3.961 16 H 0.029 0.971 17 C -0.513 4.513 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.117 3.883 26 H 0.100 0.900 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.035 0.965 39 H 0.096 0.904 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.141 -8.831 -2.333 19.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.393 6.393 5 C -0.134 4.134 6 C -0.121 4.121 7 H 0.118 0.882 8 C -0.208 4.208 9 C 0.302 3.698 10 O -0.430 6.430 11 N -0.331 5.331 12 C -0.019 4.019 13 C -0.173 4.173 14 C -0.151 4.151 15 C 0.020 3.980 16 H 0.047 0.953 17 C -0.552 4.552 18 H 0.076 0.924 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.004 4.004 26 H 0.118 0.882 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.950 -8.857 -2.053 19.235 hybrid contribution 0.736 0.385 -0.238 0.864 sum -16.214 -8.473 -2.292 18.437 Atomic orbital electron populations 1.23255 0.76442 1.03616 1.02553 1.86527 1.23371 1.33619 1.84160 1.23843 0.92198 0.81224 0.71963 1.90640 1.67306 1.36101 1.45237 1.21213 0.86667 0.98291 1.07259 1.21099 0.93581 0.95304 1.02083 0.88215 1.21914 1.02944 1.01115 0.94788 1.20270 0.89416 0.82554 0.77527 1.90665 1.64824 1.38124 1.49347 1.48277 1.09756 1.13739 1.61309 1.21841 0.94167 0.86214 0.99630 1.22000 0.99684 0.95376 1.00201 1.21635 0.90588 1.03723 0.99134 1.18896 0.94187 0.88949 0.95952 0.95277 1.21112 0.93837 1.09933 1.30297 0.92432 1.24942 0.98319 0.95755 0.94843 1.69878 1.35872 1.13875 1.33114 0.86524 0.85267 0.77939 0.78207 1.19726 1.21054 1.21035 1.21925 0.76633 1.02016 0.99852 0.88187 0.91882 0.91900 0.87214 0.86429 0.92130 0.91465 0.90180 0.91907 0.90673 0.92404 0.92344 0.94574 0.88616 0.93031 0.90244 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.72 10.57 -39.27 -0.41 -4.13 16 3 C 0.46 5.35 7.70 36.00 0.28 5.62 16 4 O -0.51 -6.70 13.72 -18.75 -0.26 -6.96 16 5 C -0.10 -1.12 4.73 -27.88 -0.13 -1.25 16 6 C -0.10 -1.32 1.50 -91.77 -0.14 -1.46 16 7 H 0.10 1.23 6.56 -51.93 -0.34 0.89 16 8 C -0.15 -1.92 8.55 37.16 0.32 -1.60 16 9 C 0.52 8.96 6.80 -10.99 -0.07 8.89 16 10 O -0.55 -11.31 15.62 5.56 0.09 -11.22 16 11 N -0.60 -10.90 2.98 -173.03 -0.52 -11.42 16 12 C 0.10 1.62 5.92 -3.70 -0.02 1.60 16 13 C -0.13 -2.38 6.08 -26.61 -0.16 -2.54 16 14 C -0.11 -2.51 4.96 -26.69 -0.13 -2.64 16 15 C 0.04 0.96 2.24 -91.87 -0.21 0.75 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.51 -13.83 8.56 -34.44 -0.29 -14.12 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.89 -24.88 11.31 55.43 0.63 -24.26 16 21 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.12 2.49 5.64 -3.94 -0.02 2.47 16 26 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.45 8.13 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.12 1.35 8.03 -51.93 -0.42 0.93 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.89 7.18 -51.93 -0.37 0.51 16 33 H 0.08 0.99 6.07 -51.93 -0.32 0.67 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.98 4.89 -51.93 -0.25 0.72 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.10 2.42 6.04 -51.93 -0.31 2.11 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.08 1.82 7.00 -51.92 -0.36 1.46 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -30.83 334.96 -6.63 -37.46 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.57 Total: 0.79 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.38 Total: -1.35 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.11 Total: -35.68 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.59 Total: -22.31 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.83 -6.63 -37.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907901.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.181 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds