Wall clock time and date at job start Tue Mar 31 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34228 * 116.99606 * 2 1 4 4 O 1.20824 * 120.00141 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00070 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47265 * 179.97438 * 5 3 2 7 7 H 1.08995 * 109.47072 * 55.00386 * 6 5 3 8 8 C 1.53001 * 109.47220 * 294.99986 * 6 5 3 9 9 C 1.50702 * 109.46956 * 174.99992 * 6 5 3 10 10 O 1.21284 * 120.00252 * 34.68686 * 9 6 5 11 11 N 1.34774 * 119.99771 * 214.68882 * 9 6 5 12 12 C 1.46927 * 120.63338 * 354.57415 * 11 9 6 13 13 C 1.53187 * 108.77596 * 233.61235 * 12 11 9 14 14 C 1.53038 * 109.31656 * 305.36572 * 13 12 11 15 15 C 1.53036 * 109.53769 * 61.36373 * 14 13 12 16 16 H 1.09001 * 109.49626 * 58.62650 * 15 14 13 17 17 C 1.50706 * 109.49708 * 178.68696 * 15 14 13 18 18 H 1.07996 * 120.00082 * 120.00405 * 17 15 14 19 19 C 1.37881 * 119.99609 * 299.72325 * 17 15 14 20 20 N 1.31510 * 120.00223 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99646 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47365 * 90.00156 * 21 19 17 23 23 H 1.48502 * 109.47085 * 210.00447 * 21 19 17 24 24 H 1.48501 * 109.47152 * 329.99872 * 21 19 17 25 25 C 1.46929 * 120.62991 * 174.58291 * 11 9 6 26 26 H 1.08993 * 109.47280 * 60.00531 * 1 2 3 27 27 H 1.09000 * 109.46452 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47044 * 299.99618 * 1 2 3 29 29 H 1.08997 * 109.47213 * 59.99863 * 5 3 2 30 30 H 1.09001 * 109.47342 * 299.99801 * 5 3 2 31 31 H 1.09006 * 109.47043 * 305.08635 * 8 6 5 32 32 H 1.08995 * 109.47027 * 65.08315 * 8 6 5 33 33 H 1.08998 * 109.47131 * 185.08649 * 8 6 5 34 34 H 1.09000 * 109.58426 * 113.82338 * 12 11 9 35 35 H 1.08995 * 109.58299 * 353.40070 * 12 11 9 36 36 H 1.09005 * 109.49659 * 185.41618 * 13 12 11 37 37 H 1.09001 * 109.50124 * 65.31799 * 13 12 11 38 38 H 1.09002 * 109.45767 * 301.34911 * 14 13 12 39 39 H 1.08998 * 109.46105 * 181.39015 * 14 13 12 40 40 H 0.97004 * 119.99983 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.58460 * 6.59985 * 25 11 9 42 42 H 1.09002 * 109.58407 * 246.17454 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0000 2.7423 -0.0011 7 1 3.5381 3.2579 0.8408 8 6 3.5595 3.4039 -1.3084 9 6 5.4998 2.8227 0.1222 10 8 6.1973 1.9780 -0.3984 11 7 6.0660 3.8334 0.8109 12 6 5.2442 4.9274 1.3461 13 6 5.8193 6.2605 0.8575 14 6 7.2996 6.3428 1.2371 15 6 8.0665 5.2072 0.5556 16 1 7.9440 5.2825 -0.5248 17 6 9.5293 5.3081 0.9041 18 1 10.0195 4.4941 1.4174 19 6 10.2430 6.4372 0.5624 20 7 9.6473 7.4263 -0.0671 21 14 12.0563 6.5619 0.9938 22 1 12.8692 6.0130 -0.1211 23 1 12.4158 7.9858 1.2142 24 1 12.3252 5.7863 2.2312 25 6 7.5170 3.8621 1.0408 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 3.9557 0.7811 -0.8908 30 1 3.9564 0.7808 0.8892 31 1 3.9479 2.8343 -2.1528 32 1 2.4708 3.4263 -1.3554 33 1 3.9460 4.4222 -1.3486 34 1 5.2625 4.8989 2.4356 35 1 4.2187 4.8205 0.9929 36 1 5.2779 7.0833 1.3244 37 1 5.7174 6.3256 -0.2258 38 1 7.4027 6.2528 2.3185 39 1 7.7051 7.3010 0.9123 40 1 10.1494 8.2208 -0.3071 41 1 7.9909 3.0522 0.4861 42 1 7.7206 3.7467 2.1054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597907903.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:38 Heat of formation + Delta-G solvation = -135.835358 kcal Electronic energy + Delta-G solvation = -23043.941278 eV Core-core repulsion = 19602.665143 eV Total energy + Delta-G solvation = -3441.276135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84234 -39.72828 -37.09759 -36.65999 -34.31328 -33.37253 -31.33207 -30.25262 -29.14261 -27.13651 -25.39613 -24.97241 -23.10160 -21.70962 -21.03930 -19.50960 -18.32553 -17.78643 -17.20651 -16.71582 -16.40699 -15.97077 -15.30368 -14.81427 -14.60433 -14.24731 -13.85572 -13.51420 -13.33407 -13.29724 -12.83879 -12.66129 -12.57173 -12.26444 -12.14201 -12.02224 -11.85254 -11.27562 -11.21274 -11.01300 -10.98602 -10.81300 -10.70575 -10.56481 -10.28823 -9.95064 -9.80648 -9.47629 -9.23319 -8.81724 -8.39319 -7.91193 -6.02382 -4.09481 2.01485 2.44246 2.99212 3.29796 3.36405 3.39136 3.55562 4.40777 4.42312 4.71472 4.82668 4.83569 4.90986 4.93246 5.19563 5.26005 5.28222 5.45021 5.51415 5.56271 5.64362 5.77797 5.82561 5.98506 6.10387 6.13882 6.30609 6.33210 6.39202 6.47789 6.65240 6.80111 6.95669 7.16168 7.32770 7.54737 7.68710 7.90521 7.99438 8.06970 8.36546 8.59653 8.94193 9.55443 11.03224 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041328 B = 0.003460 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.343870 B = 8090.378244 C = 8427.101370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.504 6.504 5 C -0.098 4.098 6 C -0.101 4.101 7 H 0.100 0.900 8 C -0.148 4.148 9 C 0.515 3.485 10 O -0.550 6.550 11 N -0.600 5.600 12 C 0.105 3.895 13 C -0.134 4.134 14 C -0.112 4.112 15 C 0.040 3.960 16 H 0.029 0.971 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.116 3.884 26 H 0.063 0.937 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.074 -9.411 1.618 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.392 6.392 5 C -0.135 4.135 6 C -0.122 4.122 7 H 0.118 0.882 8 C -0.205 4.205 9 C 0.302 3.698 10 O -0.429 6.429 11 N -0.331 5.331 12 C -0.018 4.018 13 C -0.173 4.173 14 C -0.150 4.150 15 C 0.021 3.979 16 H 0.048 0.952 17 C -0.553 4.553 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.005 4.005 26 H 0.081 0.919 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.127 0.873 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.882 -9.375 1.287 19.353 hybrid contribution 0.743 0.341 0.281 0.864 sum -16.140 -9.034 1.568 18.562 Atomic orbital electron populations 1.23256 0.76417 1.03624 1.02565 1.86526 1.23392 1.33606 1.84163 1.23815 0.92161 0.81236 0.71993 1.90640 1.67285 1.36099 1.45191 1.21230 0.86839 0.98298 1.07180 1.21133 0.93601 0.95276 1.02199 0.88204 1.21866 1.02845 1.01032 0.94779 1.20269 0.89458 0.81629 0.78416 1.90665 1.64302 1.40780 1.47139 1.48298 1.09665 1.22033 1.53122 1.21837 0.93992 0.87676 0.98318 1.21998 0.99732 0.94574 1.00950 1.21631 0.90536 1.04372 0.98510 1.18966 0.94212 0.88379 0.96344 0.95240 1.21077 0.93863 1.02371 1.37972 0.92487 1.24939 0.98267 0.95753 0.94872 1.69874 1.35960 1.06801 1.40123 0.86580 0.85352 0.77139 0.78844 1.20671 1.21260 1.19885 1.22021 0.76626 1.01872 0.99960 0.91867 0.88181 0.91893 0.86368 0.87308 0.92075 0.90216 0.91651 0.91888 0.90700 0.92399 0.92340 0.94567 0.88665 0.92973 0.90240 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.32 16 2 O -0.36 -3.69 10.57 -39.25 -0.41 -4.11 16 3 C 0.46 5.32 7.70 36.01 0.28 5.60 16 4 O -0.50 -6.68 13.72 -18.75 -0.26 -6.94 16 5 C -0.10 -1.12 4.86 -27.88 -0.14 -1.26 16 6 C -0.10 -1.34 1.57 -91.77 -0.14 -1.49 16 7 H 0.10 1.24 6.01 -51.93 -0.31 0.93 16 8 C -0.15 -1.91 8.75 37.16 0.33 -1.58 16 9 C 0.52 8.98 6.69 -10.99 -0.07 8.90 16 10 O -0.55 -11.33 15.78 5.55 0.09 -11.24 16 11 N -0.60 -10.92 2.97 -172.77 -0.51 -11.43 16 12 C 0.10 1.62 6.15 -3.71 -0.02 1.60 16 13 C -0.13 -2.38 6.08 -26.61 -0.16 -2.55 16 14 C -0.11 -2.50 4.96 -26.69 -0.13 -2.64 16 15 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 16 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.51 -13.87 8.56 -34.44 -0.29 -14.16 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.93 11.33 55.43 0.63 -24.30 16 21 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 25 C 0.12 2.48 5.66 -3.71 -0.02 2.46 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 29 H 0.12 1.34 8.01 -51.93 -0.42 0.93 16 30 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.99 6.07 -51.93 -0.32 0.67 16 33 H 0.06 0.87 8.11 -51.93 -0.42 0.45 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.97 5.51 -51.93 -0.29 0.69 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.10 2.41 6.06 -51.93 -0.31 2.10 16 40 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.08 1.82 7.00 -51.93 -0.36 1.46 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 336.69 15.07 5.07 5.07 Total: -1.00 -30.90 336.69 -6.65 -37.56 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.62 Total: 0.74 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 0.38 Total: -1.39 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.11 Total: -35.74 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.58 Total: -22.29 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.90 -6.65 -37.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597907903.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.279 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds