Wall clock time and date at job start Tue Mar 31 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45201 * 109.47595 * 2 1 4 4 C 1.34228 * 117.00484 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00084 * 179.72674 * 4 3 2 7 7 C 1.53004 * 109.47090 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.46837 * 180.02562 * 7 6 4 9 9 H 1.08999 * 109.50434 * 54.99589 * 8 7 6 10 10 C 1.53041 * 109.49594 * 175.06272 * 8 7 6 11 11 C 1.53038 * 109.54031 * 181.28431 * 10 8 7 12 12 C 1.53194 * 109.33682 * 298.67801 * 11 10 8 13 13 N 1.46929 * 108.77418 * 54.62328 * 12 11 10 14 14 C 1.34769 * 120.63153 * 126.41283 * 13 12 11 15 15 O 1.21692 * 119.99929 * 174.72149 * 14 13 12 16 16 C 1.46376 * 120.00236 * 354.71551 * 14 13 12 17 17 H 1.08001 * 119.99635 * 5.64877 * 16 14 13 18 18 C 1.40046 * 120.00093 * 185.64897 * 16 14 13 19 19 N 1.30667 * 120.00137 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 120.00013 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47301 * 89.99720 * 20 18 16 22 22 H 1.48500 * 109.47256 * 210.00037 * 20 18 16 23 23 H 1.48504 * 109.47123 * 330.00003 * 20 18 16 24 24 C 1.46929 * 118.73639 * 306.38749 * 13 12 11 25 25 H 1.09003 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47021 * 299.99947 * 1 2 3 27 27 H 1.09003 * 109.47226 * 59.99729 * 1 2 3 28 28 H 1.09004 * 109.47021 * 240.00052 * 2 1 3 29 29 H 1.08995 * 109.47372 * 120.00551 * 2 1 3 30 30 H 1.08999 * 109.47059 * 299.99970 * 6 4 3 31 31 H 1.08996 * 109.47546 * 60.00086 * 6 4 3 32 32 H 1.08999 * 109.46687 * 299.99637 * 7 6 4 33 33 H 1.08996 * 109.47314 * 59.99383 * 7 6 4 34 34 H 1.09000 * 109.45773 * 301.33833 * 10 8 7 35 35 H 1.08999 * 109.46412 * 61.29029 * 10 8 7 36 36 H 1.09007 * 109.49623 * 178.71665 * 11 10 8 37 37 H 1.08994 * 109.50255 * 58.64999 * 11 10 8 38 38 H 1.08994 * 109.58961 * 294.83510 * 12 11 10 39 39 H 1.09000 * 109.58731 * 174.40715 * 12 11 10 40 40 H 0.97006 * 120.00079 * 180.02562 * 19 18 16 41 41 H 1.08998 * 109.58665 * 293.82402 * 24 13 12 42 42 H 1.08998 * 109.70133 * 173.46349 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 -0.0057 7 6 5.4487 2.8572 -0.0043 8 6 6.0334 4.2710 -0.0099 9 1 5.6273 4.8361 0.8290 10 6 7.5568 4.1942 0.1155 11 6 8.1401 5.6088 0.1422 12 6 7.7979 6.3234 -1.1689 13 7 6.3430 6.2744 -1.3683 14 6 5.6418 7.4039 -1.5893 15 8 4.4543 7.3420 -1.8482 16 6 6.3084 8.7051 -1.5178 17 1 7.3781 8.7568 -1.3787 18 6 5.5590 9.8829 -1.6298 19 7 4.2647 9.8203 -1.7977 20 14 6.4098 11.5434 -1.5394 21 1 6.8162 11.9665 -2.9036 22 1 5.4769 12.5471 -0.9671 23 1 7.6129 11.4367 -0.6754 24 6 5.6673 4.9705 -1.3228 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 3.5858 3.4651 -0.8986 31 1 3.5840 3.4738 0.8813 32 1 5.7840 2.3293 0.8884 33 1 5.7852 2.3208 -0.8915 34 1 7.8194 3.6751 1.0373 35 1 7.9644 3.6498 -0.7362 36 1 9.2230 5.5536 0.2545 37 1 7.7152 6.1619 0.9798 38 1 8.2974 5.8237 -1.9987 39 1 8.1245 7.3619 -1.1150 40 1 3.7457 10.6361 -1.8756 41 1 5.9932 4.3604 -2.1651 42 1 4.5879 5.1141 -1.3715 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614003638.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:42 Heat of formation + Delta-G solvation = -146.418050 kcal Electronic energy + Delta-G solvation = -22534.770475 eV Core-core repulsion = 19093.035441 eV Total energy + Delta-G solvation = -3441.735035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52373 -38.78422 -36.87205 -36.06386 -33.85191 -32.57046 -31.96733 -31.19959 -29.56799 -26.66260 -24.95899 -24.12990 -23.16456 -21.61241 -20.43319 -20.10130 -18.86703 -17.69940 -16.83206 -16.52420 -16.14306 -15.71200 -15.17982 -14.44175 -14.31729 -13.92275 -13.80419 -13.62305 -13.16588 -13.13392 -13.03831 -12.75472 -12.26326 -12.06862 -12.00057 -11.79753 -11.58663 -11.45464 -11.26807 -10.98376 -10.87987 -10.67978 -10.62515 -10.57109 -10.38758 -10.31685 -10.21365 -9.86426 -9.72220 -8.85697 -7.57330 -7.18720 -6.19874 -4.64144 2.20296 2.62084 3.13390 3.20473 3.23171 4.08464 4.53215 4.56562 4.65788 4.70818 4.78904 4.83908 5.02686 5.04261 5.25108 5.31726 5.40315 5.52140 5.54629 5.61892 5.63012 5.76291 5.77907 5.88445 5.89669 6.06494 6.09421 6.19431 6.21980 6.28696 6.39341 6.48571 6.57615 6.59923 6.62542 6.86851 7.46099 7.64881 7.73592 8.15342 8.37166 9.02466 9.45001 10.57795 10.76471 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021254 B = 0.003640 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.058035 B = 7691.237320 C = 8815.631766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.514 6.514 6 C -0.118 4.118 7 C -0.096 4.096 8 C -0.103 4.103 9 H 0.074 0.926 10 C -0.107 4.107 11 C -0.135 4.135 12 C 0.120 3.880 13 N -0.642 5.642 14 C 0.560 3.440 15 O -0.579 6.579 16 C -0.544 4.544 17 H 0.073 0.927 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.124 3.876 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.092 0.908 40 H 0.268 0.732 41 H 0.040 0.960 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.103 -14.411 4.995 15.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.403 6.403 6 C -0.156 4.156 7 C -0.135 4.135 8 C -0.122 4.122 9 H 0.093 0.907 10 C -0.145 4.145 11 C -0.173 4.173 12 C -0.004 4.004 13 N -0.380 5.380 14 C 0.366 3.634 15 O -0.462 6.462 16 C -0.581 4.581 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.730 3.270 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 C 0.000 4.000 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.110 0.890 40 H 0.079 0.921 41 H 0.058 0.942 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.559 -14.641 4.814 15.422 hybrid contribution 0.512 0.567 0.101 0.770 sum -0.048 -14.074 4.915 14.908 Atomic orbital electron populations 1.21809 0.92684 1.02812 1.03722 1.22993 0.95390 0.80533 1.02406 1.86554 1.24972 1.32093 1.84018 1.24031 0.80261 0.93192 0.71689 1.90640 1.60415 1.43439 1.45767 1.21582 0.97164 0.90130 1.06713 1.21425 0.91439 0.97307 1.03290 1.21590 0.95829 0.94607 1.00224 0.90735 1.21479 0.94820 0.97104 1.01071 1.21945 0.99591 0.96028 0.99779 1.21431 0.82946 1.01609 0.94429 1.48154 1.06328 1.05899 1.77603 1.18236 0.86022 0.82788 0.76389 1.90584 1.16164 1.86162 1.53286 1.20983 0.94703 0.89241 1.53179 0.90924 1.25722 0.94493 1.00351 0.92621 1.70011 1.06076 1.28780 1.34839 0.86411 0.79824 0.81765 0.78999 1.19737 1.20479 1.18898 1.21220 0.99251 0.85500 0.94056 0.90382 0.91431 0.91331 0.91336 0.91413 0.86872 0.87473 0.91271 0.91087 0.92637 0.92301 0.92067 0.91702 0.94222 0.88951 0.92124 0.94176 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.15 0.38 -0.76 16 2 C 0.06 0.61 6.19 37.15 0.23 0.84 16 3 O -0.36 -4.59 10.22 -39.25 -0.40 -4.99 16 4 C 0.46 6.33 7.96 36.00 0.29 6.61 16 5 O -0.51 -8.03 15.73 -18.75 -0.29 -8.32 16 6 C -0.12 -1.51 5.57 -27.88 -0.16 -1.67 16 7 C -0.10 -1.26 3.98 -26.73 -0.11 -1.37 16 8 C -0.10 -1.56 2.34 -90.50 -0.21 -1.77 16 9 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 10 C -0.11 -1.48 5.17 -26.69 -0.14 -1.62 16 11 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 12 C 0.12 2.22 6.35 -3.71 -0.02 2.19 16 13 N -0.64 -14.39 2.97 -174.43 -0.52 -14.91 16 14 C 0.56 15.73 7.61 -12.99 -0.10 15.63 16 15 O -0.58 -18.45 14.48 5.20 0.08 -18.37 16 16 C -0.54 -15.07 8.88 -35.63 -0.32 -15.38 16 17 H 0.07 1.83 5.64 -52.49 -0.30 1.54 16 18 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 19 N -0.77 -22.77 11.84 55.55 0.66 -22.11 16 20 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 24 C 0.12 2.35 5.31 -3.71 -0.02 2.33 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 29 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 30 H 0.11 1.50 6.70 -51.93 -0.35 1.15 16 31 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.80 5.30 -51.93 -0.28 1.52 16 40 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.74 5.76 -51.93 -0.30 1.45 16 LS Contribution 341.06 15.07 5.14 5.14 Total: -1.00 -34.44 341.06 -7.48 -41.92 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.69 Total: 1.65 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.43 Total: 5.17 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.14 Total: -37.02 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.62 Total: -31.69 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.44 -7.48 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614003638.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.498 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds