Wall clock time and date at job start Tue Mar 31 2020 06:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47158 * 2 1 4 4 C 1.34232 * 117.00196 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99845 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00168 * 180.02562 * 4 3 2 7 7 C 1.53004 * 109.47237 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46944 * 179.97438 * 7 6 4 9 9 H 1.08998 * 109.50280 * 305.05713 * 8 7 6 10 10 C 1.53045 * 109.49511 * 184.99686 * 8 7 6 11 11 C 1.53045 * 109.53710 * 178.68477 * 10 8 7 12 12 C 1.53195 * 109.31256 * 61.36623 * 11 10 8 13 13 N 1.46927 * 108.77210 * 305.36141 * 12 11 10 14 14 C 1.34779 * 120.62706 * 233.58642 * 13 12 11 15 15 O 1.21691 * 119.99373 * 174.76467 * 14 13 12 16 16 C 1.46372 * 120.00196 * 354.76423 * 14 13 12 17 17 H 1.07992 * 120.00107 * 5.01064 * 16 14 13 18 18 C 1.40054 * 119.99751 * 185.00620 * 16 14 13 19 19 N 1.30674 * 119.99890 * 359.97438 * 18 16 14 20 20 Si 1.86798 * 119.99825 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47068 * 60.00219 * 20 18 16 22 22 H 1.48502 * 109.47157 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47159 * 300.00110 * 20 18 16 24 24 C 1.46923 * 118.73725 * 53.61361 * 13 12 11 25 25 H 1.08994 * 109.46925 * 300.00324 * 1 2 3 26 26 H 1.08997 * 109.46548 * 60.00046 * 1 2 3 27 27 H 1.08995 * 109.46967 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47614 * 239.99961 * 2 1 3 29 29 H 1.08999 * 109.47236 * 119.99668 * 2 1 3 30 30 H 1.09005 * 109.47333 * 300.00542 * 6 4 3 31 31 H 1.08997 * 109.47636 * 60.00179 * 6 4 3 32 32 H 1.08997 * 109.46708 * 299.99601 * 7 6 4 33 33 H 1.08994 * 109.47368 * 59.99750 * 7 6 4 34 34 H 1.08999 * 109.45749 * 298.70398 * 10 8 7 35 35 H 1.08998 * 109.46280 * 58.67772 * 10 8 7 36 36 H 1.09004 * 109.49589 * 181.31749 * 11 10 8 37 37 H 1.09002 * 109.49576 * 301.38023 * 11 10 8 38 38 H 1.08999 * 109.58759 * 65.15213 * 12 11 10 39 39 H 1.09002 * 109.58320 * 185.58060 * 12 11 10 40 40 H 0.97003 * 119.99553 * 180.02562 * 19 18 16 41 41 H 1.09008 * 109.58343 * 186.59482 * 24 13 12 42 42 H 1.09002 * 109.58979 * 66.18016 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9374 0.0012 7 6 5.4487 2.8574 0.0010 8 6 6.0334 4.2712 0.0010 9 1 5.6271 4.8330 -0.8400 10 6 7.5567 4.1939 -0.1248 11 6 8.1400 5.6085 -0.1579 12 6 7.7988 6.3279 1.1509 13 7 6.3441 6.2796 1.3517 14 6 5.6430 7.4099 1.5692 15 8 4.4288 7.3688 1.6390 16 6 6.3421 8.6869 1.7213 17 1 7.4114 8.7374 1.5791 18 6 5.6241 9.8433 2.0511 19 7 4.3301 9.7822 2.2225 20 14 6.5161 11.4731 2.2445 21 1 7.1918 11.8220 0.9690 22 1 5.5376 12.5347 2.5922 23 1 7.5278 11.3584 3.3255 24 6 5.6684 4.9755 1.3115 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.5851 3.4699 -0.8888 31 1 3.5846 3.4693 0.8911 32 1 5.7846 2.3249 0.8908 33 1 5.7846 2.3256 -0.8891 34 1 7.9646 3.6528 0.7291 35 1 7.8192 3.6715 -1.0447 36 1 9.2227 5.5530 -0.2710 37 1 7.7142 6.1580 -0.9974 38 1 8.2992 5.8312 1.9821 39 1 8.1253 7.3663 1.0929 40 1 3.8328 10.5833 2.4506 41 1 4.5892 5.1216 1.3597 42 1 5.9950 4.3685 2.1559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614003639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:44 Heat of formation + Delta-G solvation = -146.637070 kcal Electronic energy + Delta-G solvation = -22518.775358 eV Core-core repulsion = 19077.030826 eV Total energy + Delta-G solvation = -3441.744532 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52389 -38.78640 -36.87150 -36.05991 -33.85221 -32.56584 -31.96741 -31.20732 -29.56772 -26.66240 -24.95852 -24.12437 -23.16459 -21.61336 -20.43090 -20.09495 -18.88754 -17.69726 -16.83289 -16.51000 -16.14245 -15.70199 -15.18807 -14.45868 -14.31857 -13.91323 -13.80803 -13.62294 -13.17333 -13.12036 -13.03070 -12.73000 -12.29840 -12.07347 -11.98874 -11.80892 -11.62377 -11.41019 -11.27109 -10.95384 -10.89200 -10.68112 -10.64445 -10.55980 -10.39098 -10.31653 -10.23468 -9.86420 -9.73614 -8.84678 -7.57534 -7.18348 -6.19556 -4.64213 2.20376 2.62110 3.15132 3.20334 3.21758 4.08693 4.52364 4.57614 4.66028 4.70836 4.78880 4.83896 5.02655 5.04255 5.24727 5.31349 5.40221 5.51964 5.54617 5.61242 5.62973 5.76334 5.77764 5.87970 5.89762 6.06392 6.09274 6.19335 6.21773 6.28585 6.39415 6.48217 6.56754 6.59529 6.62968 6.86287 7.45870 7.65061 7.73630 8.15099 8.37262 9.02366 9.45099 10.57978 10.76660 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021572 B = 0.003607 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.687144 B = 7761.313396 C = 8920.265561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.359 6.359 4 C 0.464 3.536 5 O -0.514 6.514 6 C -0.118 4.118 7 C -0.097 4.097 8 C -0.103 4.103 9 H 0.074 0.926 10 C -0.107 4.107 11 C -0.135 4.135 12 C 0.121 3.879 13 N -0.642 5.642 14 C 0.560 3.440 15 O -0.579 6.579 16 C -0.545 4.545 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.906 3.094 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 C 0.123 3.877 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.091 0.909 40 H 0.269 0.731 41 H 0.084 0.916 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.075 -14.420 -5.008 15.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.308 3.692 5 O -0.403 6.403 6 C -0.156 4.156 7 C -0.135 4.135 8 C -0.122 4.122 9 H 0.092 0.908 10 C -0.145 4.145 11 C -0.174 4.174 12 C -0.003 4.003 13 N -0.380 5.380 14 C 0.366 3.634 15 O -0.462 6.462 16 C -0.582 4.582 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.730 3.270 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.001 4.001 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.603 -14.638 -4.908 15.450 hybrid contribution 0.550 0.547 0.064 0.778 sum -0.054 -14.091 -4.845 14.900 Atomic orbital electron populations 1.21807 0.92684 1.02811 1.03721 1.22994 0.95391 0.80535 1.02404 1.86555 1.24975 1.32088 1.84021 1.24033 0.80260 0.93195 0.71688 1.90638 1.60413 1.43445 1.45766 1.21580 0.97154 0.90115 1.06719 1.21424 0.91449 0.97309 1.03284 1.21590 0.95789 0.94601 1.00263 0.90764 1.21484 0.94850 0.97073 1.01085 1.21959 0.99625 0.96067 0.99735 1.21416 0.83001 1.01490 0.94419 1.48156 1.06297 1.05860 1.77692 1.18228 0.86567 0.82531 0.76094 1.90582 1.14077 1.85655 1.55887 1.20956 0.94715 0.91635 1.50849 0.90983 1.25726 0.94516 1.00032 0.92919 1.70006 1.06911 1.29144 1.33630 0.86466 0.79749 0.81361 0.79384 1.19267 1.20572 1.19272 1.21236 0.99352 0.85436 0.94089 0.91326 0.91437 0.90384 0.91415 0.91337 0.87469 0.86877 0.91091 0.91284 0.92261 0.92648 0.92019 0.91814 0.94136 0.89064 0.92065 0.89773 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.59 10.22 -39.26 -0.40 -4.99 16 4 C 0.46 6.33 7.96 36.00 0.29 6.61 16 5 O -0.51 -8.03 15.73 -18.75 -0.29 -8.32 16 6 C -0.12 -1.51 5.57 -27.88 -0.16 -1.67 16 7 C -0.10 -1.26 3.98 -26.73 -0.11 -1.37 16 8 C -0.10 -1.56 2.34 -90.50 -0.21 -1.77 16 9 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 10 C -0.11 -1.48 5.17 -26.68 -0.14 -1.62 16 11 C -0.14 -2.03 6.08 -26.61 -0.16 -2.19 16 12 C 0.12 2.23 6.31 -3.71 -0.02 2.21 16 13 N -0.64 -14.40 2.97 -174.42 -0.52 -14.91 16 14 C 0.56 15.74 7.62 -12.99 -0.10 15.64 16 15 O -0.58 -18.42 14.45 5.20 0.08 -18.34 16 16 C -0.54 -15.11 8.86 -35.63 -0.32 -15.42 16 17 H 0.07 1.82 5.69 -52.49 -0.30 1.52 16 18 C 0.09 2.42 5.50 -17.36 -0.10 2.33 16 19 N -0.77 -22.79 11.84 55.55 0.66 -22.14 16 20 Si 0.91 19.88 29.56 -169.99 -5.02 14.86 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 C 0.12 2.34 5.34 -3.71 -0.02 2.32 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 29 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 30 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.11 1.50 6.70 -51.93 -0.35 1.15 16 32 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 1.77 5.37 -51.93 -0.28 1.49 16 40 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 41 H 0.08 1.76 5.72 -51.92 -0.30 1.47 16 42 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -34.42 341.09 -7.49 -41.90 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -6.69 Total: 1.66 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -0.43 Total: 5.14 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.14 Total: -37.05 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.62 Total: -31.65 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.42 -7.49 -41.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614003639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.734 kcal (2) G-P(sol) polarization free energy of solvation -34.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds