Wall clock time and date at job start Tue Mar 31 2020 06:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47421 * 2 1 4 4 C 1.53002 * 109.47103 * 240.00812 * 2 1 3 5 5 C 1.50699 * 109.47246 * 65.61342 * 4 2 1 6 6 H 1.07995 * 120.00359 * 356.58254 * 5 4 2 7 7 C 1.37881 * 119.99569 * 176.86019 * 5 4 2 8 8 N 1.31505 * 120.00612 * 359.72658 * 7 5 4 9 9 Si 1.86802 * 119.99430 * 179.72507 * 7 5 4 10 10 H 1.48504 * 109.47147 * 90.00056 * 9 7 5 11 11 H 1.48502 * 109.47018 * 209.99599 * 9 7 5 12 12 H 1.48500 * 109.47357 * 329.99872 * 9 7 5 13 13 N 1.46892 * 109.47175 * 120.00691 * 2 1 3 14 14 C 1.48489 * 111.00145 * 182.34611 * 13 2 1 15 15 C 1.55323 * 105.19407 * 156.20966 * 14 13 2 16 16 H 1.08998 * 109.64601 * 99.69611 * 15 14 13 17 17 C 1.51678 * 107.65869 * 218.57789 * 15 14 13 18 18 O 1.42071 * 113.01769 * 146.75555 * 17 15 14 19 19 C 1.43436 * 112.31626 * 300.92799 * 18 17 15 20 20 C 1.52639 * 107.30264 * 70.49108 * 19 18 17 21 21 C 1.49846 * 112.67314 * 306.99339 * 20 19 18 22 22 C 1.50697 * 105.96584 * 147.77947 * 21 20 19 23 23 O 1.20826 * 119.99685 * 233.12994 * 22 21 20 24 24 O 1.34224 * 120.00262 * 53.13068 * 22 21 20 25 25 C 1.48958 * 111.00101 * 297.92204 * 13 2 1 26 26 H 1.09005 * 109.47229 * 59.99218 * 1 2 3 27 27 H 1.08997 * 109.47743 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47160 * 299.99542 * 1 2 3 29 29 H 1.09002 * 109.46847 * 305.61432 * 4 2 1 30 30 H 1.08996 * 109.47254 * 185.61608 * 4 2 1 31 31 H 0.96997 * 120.00866 * 180.02562 * 8 7 5 32 32 H 1.08998 * 110.29624 * 275.14191 * 14 13 2 33 33 H 1.08998 * 110.29500 * 37.18367 * 14 13 2 34 34 H 1.08993 * 108.77614 * 267.67104 * 17 15 14 35 35 H 1.09003 * 108.77291 * 25.84309 * 17 15 14 36 36 H 1.09004 * 109.89203 * 311.03409 * 19 18 17 37 37 H 1.09003 * 109.88369 * 189.94278 * 19 18 17 38 38 H 1.09003 * 108.84088 * 186.17458 * 20 19 18 39 39 H 1.08997 * 108.75762 * 67.76654 * 20 19 18 40 40 H 0.96710 * 116.99884 * 179.97438 * 24 22 21 41 41 H 1.09005 * 110.66682 * 318.35747 * 25 13 2 42 42 H 1.08990 * 110.66902 * 81.49086 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 1.6543 0.0652 -2.4758 6 1 1.0537 0.9574 -2.3785 7 6 2.0635 -0.3579 -3.7227 8 7 2.7948 -1.4444 -3.8413 9 14 1.5790 0.6125 -5.2436 10 1 2.6139 1.6395 -5.5260 11 1 1.4661 -0.3083 -6.4031 12 1 0.2720 1.2779 -5.0107 13 7 2.0196 -0.6926 1.1993 14 6 3.5029 -0.6635 1.2623 15 6 3.8499 -0.8395 2.7660 16 1 4.1252 -1.8762 2.9597 17 6 5.0315 0.0604 3.0739 18 8 5.0001 0.5866 4.3932 19 6 3.8161 1.3562 4.6446 20 6 2.6446 0.3796 4.7070 21 6 2.5666 -0.5068 3.5014 22 6 2.0035 -1.8177 3.9864 23 8 2.5861 -2.8496 3.7506 24 8 0.8547 -1.8390 4.6802 25 6 1.5836 0.0112 2.4376 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.5968 -1.7156 -1.3012 30 1 3.1253 -0.8090 -1.2005 31 1 3.0830 -1.7418 -4.7184 32 1 3.9223 -1.4831 0.6789 33 1 3.8782 0.2918 0.8954 34 1 5.9506 -0.5113 2.9460 35 1 5.0352 0.8890 2.3657 36 1 3.6602 2.0714 3.8369 37 1 3.9109 1.8829 5.5942 38 1 1.7173 0.9469 4.7874 39 1 2.7541 -0.2427 5.5951 40 1 0.5327 -2.7037 4.9699 41 1 1.6778 1.0908 2.3200 42 1 0.5600 -0.2610 2.6947 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000715764429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:10 Heat of formation + Delta-G solvation = -131.778012 kcal Electronic energy + Delta-G solvation = -23983.366007 eV Core-core repulsion = 20542.265812 eV Total energy + Delta-G solvation = -3441.100195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.53597 -39.13916 -37.64357 -36.12564 -34.66616 -32.92602 -32.22570 -29.87488 -28.48115 -26.97661 -24.89842 -24.53032 -22.72665 -22.28083 -21.84494 -19.22243 -18.81522 -17.81608 -17.44576 -16.64090 -16.40492 -15.65013 -15.35309 -15.00596 -14.82264 -14.58267 -14.04944 -13.85684 -13.63953 -13.17587 -12.89512 -12.63121 -12.37953 -12.11625 -11.92401 -11.62486 -11.51318 -11.44055 -11.23939 -10.97202 -10.89939 -10.77790 -10.70927 -10.43338 -10.40188 -10.16638 -9.91131 -9.64582 -9.23861 -9.13229 -8.36453 -7.98746 -6.01335 -4.03734 2.32873 2.95864 3.29952 3.36807 3.39231 3.76678 4.22927 4.24335 4.44555 4.53769 4.70234 4.83574 5.01046 5.05199 5.25561 5.33149 5.34520 5.37880 5.46150 5.60891 5.69168 5.72090 5.74141 5.87671 5.93160 5.98018 6.04934 6.24713 6.25756 6.39014 6.54876 6.57685 6.79719 6.98637 7.03807 7.30157 7.41752 7.69814 7.83163 7.94074 8.03833 8.40216 9.02495 9.59786 11.09987 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023448 B = 0.004574 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.834823 B = 6120.699346 C = 6475.771315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.076 3.924 3 H 0.032 0.968 4 C 0.033 3.967 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.507 5.507 14 C 0.045 3.955 15 C -0.131 4.131 16 H 0.116 0.884 17 C 0.068 3.932 18 O -0.375 6.375 19 C 0.059 3.941 20 C -0.137 4.137 21 C -0.030 4.030 22 C 0.489 3.511 23 O -0.505 6.505 24 O -0.517 6.517 25 C 0.040 3.960 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.260 0.740 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.407 0.593 41 H 0.055 0.945 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 4.457 18.342 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.031 4.031 3 H 0.050 0.950 4 C -0.004 4.004 5 C -0.558 4.558 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.231 5.231 14 C -0.083 4.083 15 C -0.150 4.150 16 H 0.134 0.866 17 C -0.009 4.009 18 O -0.293 6.293 19 C -0.018 4.018 20 C -0.175 4.175 21 C -0.032 4.032 22 C 0.331 3.669 23 O -0.391 6.391 24 O -0.328 6.328 25 C -0.088 4.088 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.265 0.735 41 H 0.074 0.926 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.173 3.842 18.089 18.493 hybrid contribution -0.463 0.635 -1.013 1.282 sum -0.636 4.477 17.075 17.664 Atomic orbital electron populations 1.21734 0.95158 1.01662 1.00218 1.22065 0.95243 0.95387 0.90451 0.94988 1.19124 0.96477 0.95807 0.88997 1.21179 1.32975 1.10306 0.91306 0.92659 1.24987 0.95195 0.95062 0.99021 1.69963 1.36422 1.23023 1.23746 0.86625 0.78888 0.79824 0.82833 1.20738 1.21226 1.19904 1.65627 1.06965 1.48923 1.01589 1.23401 0.89613 1.01868 0.93378 1.22144 0.93059 1.03865 0.95882 0.86603 1.22318 0.98043 0.96499 0.84030 1.88057 1.40884 1.68924 1.31476 1.22645 0.84423 0.92714 1.02027 1.21352 1.00979 0.98778 0.96354 1.20003 0.96394 0.90670 0.96089 1.23427 0.77779 0.92208 0.73497 1.90656 1.59541 1.35307 1.53612 1.84502 1.40046 1.40602 1.67696 1.23309 0.98226 0.97421 0.89829 0.91388 0.92678 0.95038 0.95988 0.96169 0.92980 0.89103 0.93198 0.88416 0.92888 0.92310 0.88223 0.89410 0.90617 0.73484 0.92641 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 8.91 37.15 0.33 -2.11 16 2 C 0.08 1.54 1.85 -67.72 -0.13 1.42 16 3 H 0.03 0.66 7.98 -51.93 -0.41 0.24 16 4 C 0.03 0.85 4.48 -27.88 -0.12 0.72 16 5 C -0.52 -14.27 8.47 -34.44 -0.29 -14.56 16 6 H 0.06 1.47 6.98 -52.49 -0.37 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 9 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.51 -9.12 5.12 -221.49 -1.13 -10.26 16 14 C 0.05 0.77 4.91 -1.71 -0.01 0.76 16 15 C -0.13 -1.86 2.88 -90.77 -0.26 -2.12 16 16 H 0.12 1.85 6.02 -51.93 -0.31 1.54 16 17 C 0.07 0.84 6.21 36.49 0.23 1.07 16 18 O -0.38 -4.63 10.81 -35.23 -0.38 -5.01 16 19 C 0.06 0.57 6.93 36.97 0.26 0.82 16 20 C -0.14 -1.39 4.88 -28.48 -0.14 -1.53 16 21 C -0.03 -0.39 0.83 -157.50 -0.13 -0.52 16 22 C 0.49 6.91 6.07 36.00 0.22 7.13 16 23 O -0.50 -8.72 15.59 -18.75 -0.29 -9.01 16 24 O -0.52 -5.60 12.72 -39.24 -0.50 -6.10 16 25 C 0.04 0.58 4.10 -2.25 -0.01 0.57 16 26 H 0.07 1.34 6.92 -51.93 -0.36 0.98 16 27 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.49 6.98 -51.92 -0.36 0.13 16 29 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.02 0.54 6.80 -51.93 -0.35 0.19 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.09 1.69 7.68 -51.93 -0.40 1.29 16 33 H 0.05 0.83 6.87 -51.93 -0.36 0.47 16 34 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.63 7.03 -51.93 -0.37 0.27 16 36 H 0.06 0.54 8.03 -51.93 -0.42 0.13 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.75 7.83 -51.93 -0.41 0.34 16 39 H 0.08 0.77 7.54 -51.93 -0.39 0.38 16 40 H 0.41 2.79 9.10 45.56 0.41 3.21 16 41 H 0.06 0.74 7.97 -51.93 -0.41 0.33 16 42 H 0.09 1.28 7.08 -51.93 -0.37 0.91 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -32.65 326.08 -7.53 -40.18 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -5.70 Total: 1.60 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -0.16 Total: -6.78 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.40 Total: -36.16 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -1.17 Total: -20.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.65 -7.53 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000715764429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.600 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds