Wall clock time and date at job start Tue Mar 31 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47298 * 2 1 4 4 H 1.08998 * 109.47393 * 305.00514 * 3 2 1 5 5 C 1.53006 * 109.46763 * 65.00175 * 3 2 1 6 6 C 1.50702 * 109.47251 * 185.00047 * 3 2 1 7 7 O 1.21277 * 120.00116 * 274.68960 * 6 3 2 8 8 N 1.34773 * 119.99570 * 94.68770 * 6 3 2 9 9 C 1.46933 * 120.60869 * 354.59481 * 8 6 3 10 10 C 1.53187 * 108.77061 * 233.53396 * 9 8 6 11 11 C 1.53041 * 109.34510 * 305.41535 * 10 9 8 12 12 C 1.53044 * 109.53569 * 61.34494 * 11 10 9 13 13 H 1.09002 * 109.49612 * 58.62725 * 12 11 10 14 14 C 1.50703 * 109.49272 * 178.68796 * 12 11 10 15 15 O 1.21208 * 119.99841 * 120.00653 * 14 12 11 16 16 O 1.34307 * 120.00368 * 299.99983 * 14 12 11 17 17 C 1.34920 * 117.00533 * 180.02562 * 16 14 12 18 18 H 1.08001 * 119.99490 * 0.02562 * 17 16 14 19 19 C 1.38747 * 120.00481 * 179.97438 * 17 16 14 20 20 N 1.31444 * 119.99829 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00325 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47453 * 89.99671 * 21 19 17 23 23 H 1.48501 * 109.47135 * 210.00375 * 21 19 17 24 24 H 1.48503 * 109.46756 * 329.99981 * 21 19 17 25 25 C 1.46936 * 120.62546 * 174.57574 * 8 6 3 26 26 H 1.09004 * 109.47155 * 300.00046 * 1 2 3 27 27 H 1.09001 * 109.47014 * 59.99262 * 1 2 3 28 28 H 1.08998 * 109.47684 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47025 * 240.00718 * 2 1 3 30 30 H 1.08997 * 109.47281 * 120.00314 * 2 1 3 31 31 H 1.08996 * 109.47027 * 64.88677 * 5 3 2 32 32 H 1.09003 * 109.46888 * 184.88489 * 5 3 2 33 33 H 1.08996 * 109.46958 * 304.88647 * 5 3 2 34 34 H 1.08993 * 109.55745 * 113.76395 * 9 8 6 35 35 H 1.08999 * 109.61281 * 353.33468 * 9 8 6 36 36 H 1.09000 * 109.49796 * 185.44533 * 10 9 8 37 37 H 1.09003 * 109.49998 * 65.38043 * 10 9 8 38 38 H 1.08992 * 109.46519 * 181.37153 * 11 10 9 39 39 H 1.09010 * 109.45542 * 301.33064 * 11 10 9 40 40 H 0.97004 * 120.00102 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.58735 * 6.64416 * 25 8 6 42 42 H 1.09002 * 109.69684 * 246.29021 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5419 1.4443 -0.1238 7 8 4.2322 1.3288 0.8666 8 7 4.1179 1.5743 -1.3353 9 6 3.2986 1.5964 -2.5548 10 6 3.8263 0.5326 -3.5226 11 6 5.3199 0.7630 -3.7638 12 6 6.0783 0.6315 -2.4410 13 1 5.9072 -0.3595 -2.0206 14 6 7.5526 0.8267 -2.6850 15 8 8.1450 1.7259 -2.1287 16 8 8.2100 0.0041 -3.5187 17 6 9.5282 0.2335 -3.6925 18 1 10.0076 1.0490 -3.1714 19 6 10.2681 -0.5789 -4.5396 20 7 9.6846 -1.5717 -5.1734 21 14 12.0932 -0.2617 -4.7796 22 1 12.8661 -1.0313 -3.7719 23 1 12.4948 -0.6893 -6.1438 24 1 12.3697 1.1879 -4.6138 25 6 5.5767 1.6969 -1.4613 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 2.1392 1.6406 2.1428 32 1 1.9222 3.1775 1.2716 33 1 0.5561 2.0487 1.4392 34 1 3.3646 2.5794 -3.0209 35 1 2.2609 1.3781 -2.3024 36 1 3.2898 0.6033 -4.4687 37 1 3.6759 -0.4575 -3.0922 38 1 5.6921 0.0220 -4.4711 39 1 5.4719 1.7625 -4.1717 40 1 10.2020 -2.1399 -5.7655 41 1 6.0417 1.5453 -0.4871 42 1 5.8310 2.6879 -1.8373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726029651.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:56 Heat of formation + Delta-G solvation = -136.290678 kcal Electronic energy + Delta-G solvation = -23054.870357 eV Core-core repulsion = 19613.574478 eV Total energy + Delta-G solvation = -3441.295879 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48798 -39.09919 -37.26898 -35.66802 -35.14127 -32.86211 -32.08567 -31.13921 -29.85850 -26.39297 -25.54111 -24.78512 -23.68844 -21.81964 -21.10521 -19.51881 -18.63029 -17.71740 -17.54998 -16.51476 -15.82143 -15.34031 -15.07055 -14.85194 -14.44085 -14.36063 -14.21175 -13.93514 -13.72261 -13.17834 -13.04515 -12.83223 -12.66425 -12.39141 -12.29938 -11.99216 -11.71087 -11.59872 -11.27792 -11.19737 -11.11612 -10.93347 -10.81253 -10.73397 -10.52608 -10.42671 -10.30025 -9.78128 -9.60672 -9.00086 -8.58249 -8.55212 -6.40980 -4.08549 2.63550 2.94841 3.11328 3.19833 3.25692 3.51429 3.96267 4.33801 4.51782 4.56173 4.67292 4.78388 4.94664 4.99924 5.09271 5.10639 5.15271 5.19148 5.24316 5.34301 5.40697 5.53680 5.59278 5.64220 5.71766 5.74206 5.79563 5.83364 5.92002 6.03943 6.05910 6.10574 6.18924 6.39635 6.45680 6.54194 6.83345 7.40280 7.44240 7.95725 8.21683 8.70989 9.08177 9.85725 10.76966 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.034401 B = 0.003581 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.739995 B = 7817.218549 C = 8174.076889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.111 4.111 4 H 0.091 0.909 5 C -0.138 4.138 6 C 0.517 3.483 7 O -0.539 6.539 8 N -0.611 5.611 9 C 0.102 3.898 10 C -0.132 4.132 11 C -0.111 4.111 12 C -0.082 4.082 13 H 0.096 0.904 14 C 0.404 3.596 15 O -0.555 6.555 16 O -0.211 6.211 17 C -0.382 4.382 18 H 0.095 0.905 19 C 0.042 3.958 20 N -0.866 5.866 21 Si 0.942 3.058 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.267 1.267 25 C 0.131 3.869 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.269 0.731 41 H 0.098 0.902 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.599 3.839 4.211 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.132 4.132 4 H 0.109 0.891 5 C -0.196 4.196 6 C 0.305 3.695 7 O -0.415 6.415 8 N -0.344 5.344 9 C -0.021 4.021 10 C -0.170 4.170 11 C -0.149 4.149 12 C -0.103 4.103 13 H 0.115 0.885 14 C 0.250 3.750 15 O -0.452 6.452 16 O -0.118 6.118 17 C -0.458 4.458 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.503 5.503 21 Si 0.767 3.233 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.191 1.191 25 C 0.009 3.991 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.004 3.834 4.718 19.953 hybrid contribution 0.980 0.061 -0.329 1.036 sum -18.023 3.894 4.390 18.954 Atomic orbital electron populations 1.21819 0.94965 1.01990 1.02060 1.21469 0.96356 0.94215 1.03193 1.21398 0.91981 0.98888 1.00975 0.89084 1.21731 1.01287 1.00357 0.96223 1.20683 0.90515 0.75659 0.82596 1.90692 1.64951 1.49201 1.36693 1.48187 1.07575 1.72522 1.06136 1.21877 0.94896 0.99934 0.85391 1.21936 0.96618 0.99168 0.99323 1.21503 0.93633 1.03523 0.96254 1.21047 0.90430 1.01321 0.97465 0.88545 1.22889 0.89430 0.82264 0.80401 1.90565 1.69641 1.34218 1.50825 1.83863 1.24039 1.49845 1.54056 1.21232 0.80608 1.16268 1.27730 0.88716 1.25318 1.00354 0.95074 0.95406 1.69992 1.36672 1.16470 1.27134 0.85690 0.80611 0.79161 0.77847 1.19883 1.20339 1.19100 1.21383 0.78250 0.98456 1.01021 0.92224 0.92574 0.92376 0.91426 0.91010 0.91258 0.92556 0.91637 0.91128 0.89526 0.90212 0.91211 0.89546 0.91388 0.92118 0.88370 0.90426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.15 0.36 -0.61 16 2 C -0.11 -0.99 5.28 -26.73 -0.14 -1.13 16 3 C -0.11 -1.08 1.92 -91.77 -0.18 -1.26 16 4 H 0.09 0.70 6.19 -51.93 -0.32 0.37 16 5 C -0.14 -1.29 8.80 37.16 0.33 -0.96 16 6 C 0.52 7.34 6.69 -10.99 -0.07 7.27 16 7 O -0.54 -9.90 15.58 5.56 0.09 -9.81 16 8 N -0.61 -8.41 2.97 -172.76 -0.51 -8.92 16 9 C 0.10 1.02 6.15 -3.71 -0.02 1.00 16 10 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 11 C -0.11 -1.72 5.11 -26.69 -0.14 -1.85 16 12 C -0.08 -1.53 2.78 -91.65 -0.25 -1.79 16 13 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 14 C 0.40 10.04 7.21 36.01 0.26 10.30 16 15 O -0.56 -15.08 15.16 -19.05 -0.29 -15.37 16 16 O -0.21 -6.04 9.63 -20.69 -0.20 -6.24 16 17 C -0.38 -11.38 9.65 30.92 0.30 -11.08 16 18 H 0.10 2.85 6.86 -52.49 -0.36 2.49 16 19 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 20 N -0.87 -25.32 13.67 55.48 0.76 -24.56 16 21 Si 0.94 21.47 29.55 -169.99 -5.02 16.44 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.13 2.26 5.08 -3.71 -0.02 2.24 16 26 H 0.06 0.36 6.46 -51.93 -0.34 0.02 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.59 8.11 -51.93 -0.42 0.17 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 6.35 -51.93 -0.33 0.13 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.64 5.50 -51.93 -0.29 0.35 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 39 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.10 1.94 7.00 -51.93 -0.36 1.57 16 42 H 0.08 1.36 7.95 -51.93 -0.41 0.95 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -34.78 339.56 -6.49 -41.27 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.59 Total: 0.45 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.16 Total: 1.63 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.24 Total: -33.48 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.40 Total: -31.43 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.78 -6.49 -41.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726029651.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.022 kcal (2) G-P(sol) polarization free energy of solvation -34.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds