Wall clock time and date at job start Tue Mar 31 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47292 * 2 1 4 4 H 1.09002 * 109.46962 * 305.00237 * 3 2 1 5 5 C 1.53001 * 109.47241 * 64.99706 * 3 2 1 6 6 C 1.50704 * 109.46970 * 185.00047 * 3 2 1 7 7 O 1.21281 * 119.99990 * 334.74111 * 6 3 2 8 8 N 1.34778 * 119.99388 * 154.74514 * 6 3 2 9 9 C 1.46925 * 120.63596 * 4.93769 * 8 6 3 10 10 C 1.53614 * 108.54162 * 126.36982 * 9 8 6 11 11 C 1.53042 * 109.24268 * 54.85962 * 10 9 8 12 12 C 1.53044 * 109.53512 * 298.50512 * 11 10 9 13 13 H 1.08993 * 109.52733 * 301.39798 * 12 11 10 14 14 C 1.50703 * 109.49494 * 181.31548 * 12 11 10 15 15 O 1.21215 * 120.00138 * 240.16360 * 14 12 11 16 16 O 1.34315 * 119.99942 * 60.16764 * 14 12 11 17 17 C 1.34923 * 117.00194 * 179.97438 * 16 14 12 18 18 H 1.08007 * 119.99477 * 0.02562 * 17 16 14 19 19 C 1.38749 * 119.99933 * 179.97438 * 17 16 14 20 20 N 1.31442 * 120.00285 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99805 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47382 * 60.00107 * 21 19 17 23 23 H 1.48498 * 109.47238 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47050 * 300.00430 * 21 19 17 25 25 C 1.46927 * 120.62492 * 185.22351 * 8 6 3 26 26 H 1.09003 * 109.46852 * 300.00227 * 1 2 3 27 27 H 1.09007 * 109.47133 * 60.00065 * 1 2 3 28 28 H 1.08995 * 109.47460 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46852 * 239.99773 * 2 1 3 30 30 H 1.09007 * 109.47133 * 119.99935 * 2 1 3 31 31 H 1.08994 * 109.47151 * 294.88617 * 5 3 2 32 32 H 1.09000 * 109.46793 * 174.88088 * 5 3 2 33 33 H 1.08998 * 109.46594 * 54.88240 * 5 3 2 34 34 H 1.09008 * 109.58422 * 246.20314 * 9 8 6 35 35 H 1.09002 * 109.58362 * 6.62598 * 9 8 6 36 36 H 1.09001 * 109.63852 * 294.86463 * 10 9 8 37 37 H 1.09003 * 109.45854 * 174.74221 * 10 9 8 38 38 H 1.09005 * 109.46195 * 178.49253 * 11 10 9 39 39 H 1.09000 * 109.46483 * 58.53151 * 11 10 9 40 40 H 0.96999 * 119.99947 * 180.02562 * 20 19 17 41 41 H 1.08999 * 109.58661 * 353.36340 * 25 8 6 42 42 H 1.08994 * 109.59495 * 113.79484 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1266 1.3073 6 6 3.5420 1.4442 -0.1238 7 8 4.1820 0.4824 0.2452 8 7 4.1739 2.5147 -0.6447 9 6 3.4245 3.7287 -0.9960 10 6 4.0832 4.9283 -0.2983 11 6 5.5668 4.9762 -0.6706 12 6 6.2574 3.6992 -0.1863 13 1 6.1366 3.6065 0.8929 14 6 7.7246 3.7615 -0.5248 15 8 8.2163 2.9212 -1.2468 16 8 8.4875 4.7483 -0.0263 17 6 9.7927 4.7455 -0.3678 18 1 10.1799 3.9725 -1.0151 19 6 10.6374 5.7364 0.1116 20 7 10.1661 6.6775 0.8990 21 14 12.4444 5.7330 -0.3618 22 1 12.5696 5.8382 -1.8378 23 1 13.1256 6.8878 0.2767 24 1 13.0746 4.4700 0.0996 25 6 5.6243 2.4875 -0.8777 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.5493 2.2066 1.3544 32 1 2.0752 3.1231 1.3472 33 1 1.9931 1.5373 2.1516 34 1 3.4479 3.8727 -2.0763 35 1 2.3921 3.6307 -0.6606 36 1 3.9823 4.8245 0.7820 37 1 3.5970 5.8486 -0.6222 38 1 6.0319 5.8418 -0.1988 39 1 5.6673 5.0553 -1.7531 40 1 10.7565 7.3704 1.2339 41 1 6.0437 1.5705 -0.4640 42 1 5.8234 2.5324 -1.9483 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726029655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:58 Heat of formation + Delta-G solvation = -137.438267 kcal Electronic energy + Delta-G solvation = -23011.515162 eV Core-core repulsion = 19570.169520 eV Total energy + Delta-G solvation = -3441.345642 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48716 -39.09639 -37.27015 -35.58984 -35.14225 -32.91816 -32.08971 -31.18766 -29.82623 -26.19559 -25.58811 -24.79855 -23.80337 -21.83681 -21.01842 -19.51705 -18.64738 -17.71551 -17.41897 -16.50074 -15.89739 -15.38524 -15.04300 -14.86085 -14.46787 -14.30938 -14.16481 -14.03742 -13.65475 -13.18976 -13.12113 -12.88842 -12.49813 -12.39261 -12.31421 -11.92512 -11.75805 -11.61496 -11.27195 -11.17990 -11.10538 -10.93867 -10.83539 -10.74131 -10.51500 -10.46246 -10.29377 -9.78605 -9.60251 -8.99987 -8.57920 -8.54863 -6.40781 -4.08426 2.64898 2.94607 3.13179 3.19556 3.23664 3.51591 3.96336 4.34141 4.51066 4.54605 4.72517 4.80973 4.93260 5.00009 5.08490 5.14222 5.15182 5.19208 5.24393 5.34870 5.39730 5.51836 5.55866 5.62816 5.65991 5.77539 5.80900 5.84519 5.91892 6.04327 6.06684 6.13857 6.18764 6.39555 6.45808 6.54213 6.83459 7.39989 7.44456 7.95808 8.21628 8.70967 9.08242 9.85773 10.77108 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.038210 B = 0.003482 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.617172 B = 8040.142682 C = 8390.167785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.110 4.110 4 H 0.092 0.908 5 C -0.144 4.144 6 C 0.517 3.483 7 O -0.539 6.539 8 N -0.611 5.611 9 C 0.101 3.899 10 C -0.132 4.132 11 C -0.111 4.111 12 C -0.082 4.082 13 H 0.096 0.904 14 C 0.404 3.596 15 O -0.555 6.555 16 O -0.211 6.211 17 C -0.382 4.382 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.866 5.866 21 Si 0.943 3.057 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.270 1.270 25 C 0.131 3.869 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.270 0.730 41 H 0.098 0.902 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.031 -4.017 -1.633 20.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.131 4.131 4 H 0.110 0.890 5 C -0.202 4.202 6 C 0.305 3.695 7 O -0.416 6.416 8 N -0.345 5.345 9 C -0.021 4.021 10 C -0.170 4.170 11 C -0.149 4.149 12 C -0.103 4.103 13 H 0.115 0.885 14 C 0.250 3.750 15 O -0.453 6.453 16 O -0.118 6.118 17 C -0.459 4.459 18 H 0.112 0.888 19 C -0.161 4.161 20 N -0.503 5.503 21 Si 0.768 3.232 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.195 1.195 25 C 0.009 3.991 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.466 -4.541 -1.495 20.044 hybrid contribution 0.981 0.204 -0.233 1.029 sum -18.485 -4.337 -1.728 19.065 Atomic orbital electron populations 1.21827 0.95445 1.01841 1.01831 1.21378 0.95406 0.94260 1.03461 1.21369 0.91970 0.99228 1.00583 0.89033 1.21820 1.01918 1.00614 0.95843 1.20696 0.90133 0.82099 0.76542 1.90697 1.68033 1.34518 1.48319 1.48176 1.08616 1.14601 1.63061 1.21971 0.95708 0.84373 1.00087 1.22012 0.96230 0.97613 1.01177 1.21503 0.94195 0.97383 1.01828 1.21047 0.90223 0.96645 1.02342 0.88545 1.22893 0.89001 0.81820 0.81285 1.90566 1.74990 1.41057 1.38658 1.83866 1.21794 1.44088 1.62019 1.21182 0.80567 1.13061 1.31069 0.88771 1.25315 1.00206 0.94739 0.95870 1.69980 1.36344 1.13046 1.30925 0.85753 0.80390 0.78122 0.78974 1.19493 1.20386 1.19479 1.21387 0.78021 0.98886 1.00796 0.92390 0.92771 0.92522 0.91669 0.90826 0.91246 0.91951 0.91760 0.91105 0.89525 0.91179 0.90244 0.89556 0.91389 0.92061 0.88362 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.67 37.16 0.36 -0.69 16 2 C -0.11 -1.02 4.85 -26.73 -0.13 -1.15 16 3 C -0.11 -1.07 1.85 -91.77 -0.17 -1.24 16 4 H 0.09 0.70 6.73 -51.93 -0.35 0.35 16 5 C -0.14 -1.19 8.50 37.16 0.32 -0.87 16 6 C 0.52 7.32 6.80 -10.98 -0.07 7.25 16 7 O -0.54 -9.89 15.62 5.56 0.09 -9.81 16 8 N -0.61 -8.39 2.97 -172.50 -0.51 -8.90 16 9 C 0.10 1.01 5.95 -3.49 -0.02 0.99 16 10 C -0.13 -1.44 6.10 -26.39 -0.16 -1.60 16 11 C -0.11 -1.71 5.10 -26.69 -0.14 -1.85 16 12 C -0.08 -1.53 2.78 -91.65 -0.25 -1.79 16 13 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 14 C 0.40 10.04 7.20 36.01 0.26 10.30 16 15 O -0.56 -15.08 15.16 -19.06 -0.29 -15.37 16 16 O -0.21 -6.03 9.63 -20.72 -0.20 -6.23 16 17 C -0.38 -11.39 9.64 30.92 0.30 -11.09 16 18 H 0.09 2.83 6.86 -52.48 -0.36 2.47 16 19 C 0.04 1.21 5.49 -17.53 -0.10 1.11 16 20 N -0.87 -25.33 13.67 55.48 0.76 -24.58 16 21 Si 0.94 21.48 29.55 -169.99 -5.02 16.45 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C 0.13 2.26 5.07 -3.71 -0.02 2.25 16 26 H 0.06 0.36 6.68 -51.93 -0.35 0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.80 8.03 -51.93 -0.42 0.38 16 31 H 0.07 0.43 6.82 -51.93 -0.35 0.07 16 32 H 0.06 0.50 7.20 -51.93 -0.37 0.13 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.09 0.63 4.89 -51.93 -0.25 0.38 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.10 1.94 7.00 -51.93 -0.36 1.57 16 42 H 0.08 1.35 7.95 -51.93 -0.41 0.94 16 LS Contribution 338.76 15.07 5.11 5.11 Total: -1.00 -34.76 338.76 -6.49 -41.25 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.59 Total: 0.45 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 0.17 Total: 1.62 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.25 Total: -33.47 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.40 Total: -31.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.76 -6.49 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726029655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.184 kcal (2) G-P(sol) polarization free energy of solvation -34.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds