Wall clock time and date at job start Tue Mar 31 2020 05:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46791 * 2 1 4 4 H 1.08994 * 109.47210 * 54.99838 * 3 2 1 5 5 C 1.53003 * 109.47029 * 294.99956 * 3 2 1 6 6 C 1.50703 * 109.46899 * 174.99926 * 3 2 1 7 7 O 1.21276 * 120.00197 * 15.39958 * 6 3 2 8 8 N 1.34779 * 119.99667 * 195.39496 * 6 3 2 9 9 C 1.46918 * 120.63120 * 5.16373 * 8 6 3 10 10 C 1.53630 * 108.54360 * 126.36807 * 9 8 6 11 11 C 1.53034 * 109.24154 * 54.85589 * 10 9 8 12 12 C 1.53045 * 109.53625 * 298.51135 * 11 10 9 13 13 H 1.08999 * 109.52302 * 301.39917 * 12 11 10 14 14 C 1.50703 * 109.49568 * 181.31880 * 12 11 10 15 15 O 1.21216 * 119.99889 * 240.16539 * 14 12 11 16 16 O 1.34309 * 120.00106 * 60.16230 * 14 12 11 17 17 C 1.34924 * 116.99868 * 180.02562 * 16 14 12 18 18 H 1.07995 * 119.99884 * 359.97438 * 17 16 14 19 19 C 1.38750 * 119.99713 * 180.02562 * 17 16 14 20 20 N 1.31439 * 120.00515 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47085 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47309 * 119.99775 * 21 19 17 24 24 H 1.48494 * 109.47010 * 239.99749 * 21 19 17 25 25 C 1.46928 * 120.62843 * 185.44310 * 8 6 3 26 26 H 1.09000 * 109.47011 * 60.00498 * 1 2 3 27 27 H 1.09007 * 109.46538 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47070 * 299.99565 * 1 2 3 29 29 H 1.09000 * 109.47152 * 240.00608 * 2 1 3 30 30 H 1.08995 * 109.47359 * 119.99818 * 2 1 3 31 31 H 1.08997 * 109.47099 * 301.27871 * 5 3 2 32 32 H 1.09003 * 109.46957 * 61.28339 * 5 3 2 33 33 H 1.09004 * 109.46794 * 181.28075 * 5 3 2 34 34 H 1.09002 * 109.59074 * 246.19611 * 9 8 6 35 35 H 1.08996 * 109.59139 * 6.62489 * 9 8 6 36 36 H 1.09007 * 109.62924 * 294.86063 * 10 9 8 37 37 H 1.08993 * 109.43273 * 174.72487 * 10 9 8 38 38 H 1.09001 * 109.46267 * 178.49622 * 11 10 9 39 39 H 1.08996 * 109.46183 * 58.53182 * 11 10 9 40 40 H 0.96994 * 120.00653 * 180.02562 * 20 19 17 41 41 H 1.08996 * 109.58633 * 353.37073 * 25 8 6 42 42 H 1.09000 * 109.58745 * 113.80059 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6351 2.1266 -1.3074 6 6 3.5419 1.4444 0.1239 7 8 4.1680 0.4249 -0.0747 8 7 4.1893 2.5791 0.4552 9 6 3.4401 3.7925 0.8087 10 6 3.9331 4.2903 2.1759 11 6 5.4507 4.4814 2.1257 12 6 6.1259 3.1402 1.8297 13 1 5.8564 2.4186 2.6009 14 6 7.6217 3.3231 1.8125 15 8 8.2518 3.0693 0.8086 16 8 8.2565 3.7673 2.9096 17 6 9.5957 3.9093 2.8270 18 1 10.1085 3.6687 1.9075 19 6 10.3141 4.3634 3.9237 20 7 9.6901 4.6557 5.0430 21 14 12.1684 4.5593 3.8096 22 1 12.6251 4.1663 2.4523 23 1 12.5331 5.9761 4.0642 24 1 12.8211 3.6907 4.8218 25 6 5.6577 2.6279 0.4640 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.0510 1.5745 -2.1502 32 1 0.5481 2.1455 -1.3861 33 1 2.0179 3.1471 -1.3171 34 1 3.6108 4.5603 0.0540 35 1 2.3762 3.5620 0.8641 36 1 3.6837 3.5581 2.9439 37 1 3.4543 5.2410 2.4099 38 1 5.8010 4.8601 3.0859 39 1 5.7011 5.1951 1.3409 40 1 10.1922 4.9735 5.8096 41 1 6.0575 1.6286 0.2920 42 1 6.0056 3.3025 -0.3183 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726029656.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:01 Heat of formation + Delta-G solvation = -137.079987 kcal Electronic energy + Delta-G solvation = -22987.245542 eV Core-core repulsion = 19545.915436 eV Total energy + Delta-G solvation = -3441.330106 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.48758 -39.09968 -37.27351 -35.59210 -35.14380 -32.93632 -32.09181 -31.16536 -29.82182 -26.17068 -25.59713 -24.82143 -23.80818 -21.86764 -20.95895 -19.45976 -18.78376 -17.71698 -17.32949 -16.53893 -15.84635 -15.58846 -14.93882 -14.74080 -14.50551 -14.39419 -14.21180 -13.86657 -13.67032 -13.37586 -13.04017 -12.77612 -12.58751 -12.45090 -12.27368 -11.92208 -11.75028 -11.61042 -11.29311 -11.18614 -11.12037 -10.93971 -10.81308 -10.72714 -10.52554 -10.40110 -10.30236 -9.77491 -9.60861 -9.00057 -8.58538 -8.55095 -6.41074 -4.08581 2.65537 2.94245 3.09772 3.20067 3.27616 3.51230 3.96334 4.34546 4.51062 4.54202 4.71207 4.79198 4.93826 4.99802 5.08574 5.13638 5.15197 5.19007 5.25467 5.34167 5.39588 5.51595 5.56240 5.62957 5.66609 5.75969 5.82183 5.85142 5.92295 6.03942 6.06698 6.15131 6.18953 6.39512 6.45963 6.54127 6.83314 7.40662 7.44490 7.95724 8.21612 8.71088 9.08197 9.85755 10.76954 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.037104 B = 0.003455 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.450639 B = 8102.841643 C = 8356.131975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.107 4.107 3 C -0.111 4.111 4 H 0.094 0.906 5 C -0.144 4.144 6 C 0.517 3.483 7 O -0.539 6.539 8 N -0.611 5.611 9 C 0.103 3.897 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.083 4.083 13 H 0.097 0.903 14 C 0.405 3.595 15 O -0.555 6.555 16 O -0.212 6.212 17 C -0.381 4.381 18 H 0.096 0.904 19 C 0.042 3.958 20 N -0.865 5.865 21 Si 0.941 3.059 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.131 3.869 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.269 0.731 41 H 0.098 0.902 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.345 -1.070 -7.076 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.144 4.144 3 C -0.132 4.132 4 H 0.112 0.888 5 C -0.202 4.202 6 C 0.305 3.695 7 O -0.416 6.416 8 N -0.344 5.344 9 C -0.020 4.020 10 C -0.171 4.171 11 C -0.149 4.149 12 C -0.103 4.103 13 H 0.115 0.885 14 C 0.250 3.750 15 O -0.453 6.453 16 O -0.118 6.118 17 C -0.458 4.458 18 H 0.113 0.887 19 C -0.162 4.162 20 N -0.503 5.503 21 Si 0.766 3.234 22 H -0.189 1.189 23 H -0.202 1.202 24 H -0.202 1.202 25 C 0.009 3.991 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.779 -1.600 -7.216 20.181 hybrid contribution 0.983 0.241 0.160 1.025 sum -17.796 -1.359 -7.056 19.192 Atomic orbital electron populations 1.21837 0.95517 1.01849 1.01789 1.21359 0.95273 0.94264 1.03549 1.21370 0.92040 0.99283 1.00522 0.88795 1.21816 1.02010 1.00504 0.95825 1.20687 0.90051 0.82613 0.76156 1.90698 1.68899 1.31830 1.50147 1.48159 1.07123 1.11278 1.67844 1.21977 0.96100 0.86940 0.97016 1.22023 0.96547 1.01870 0.96684 1.21499 0.93834 0.95634 1.03929 1.21050 0.90496 0.99581 0.99156 0.88534 1.22893 0.89870 0.79098 0.83108 1.90567 1.68453 1.51832 1.34398 1.83867 1.23243 1.69286 1.35434 1.21283 0.78523 1.45401 1.00556 0.88661 1.25321 1.00507 0.96067 0.94284 1.69993 1.36334 1.41745 1.02189 0.85632 0.80691 0.78179 0.78883 1.18942 1.20182 1.20178 1.21385 0.77859 1.03970 0.95851 0.92453 0.92517 0.92743 0.91023 0.91429 0.91964 0.91216 0.92003 0.91069 0.89585 0.91173 0.90253 0.89564 0.91398 0.92166 0.88362 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.11 -1.03 4.73 -26.73 -0.13 -1.16 16 3 C -0.11 -1.07 1.87 -91.77 -0.17 -1.24 16 4 H 0.09 0.73 6.58 -51.93 -0.34 0.39 16 5 C -0.14 -1.12 8.70 37.16 0.32 -0.80 16 6 C 0.52 7.29 6.89 -10.98 -0.08 7.22 16 7 O -0.54 -9.88 15.51 5.56 0.09 -9.79 16 8 N -0.61 -8.34 2.97 -172.51 -0.51 -8.85 16 9 C 0.10 1.02 5.43 -3.49 -0.02 1.00 16 10 C -0.13 -1.45 6.10 -26.39 -0.16 -1.61 16 11 C -0.11 -1.71 5.10 -26.69 -0.14 -1.85 16 12 C -0.08 -1.54 2.78 -91.65 -0.25 -1.79 16 13 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 14 C 0.40 10.04 7.20 36.01 0.26 10.30 16 15 O -0.56 -15.08 15.16 -19.06 -0.29 -15.37 16 16 O -0.21 -6.05 9.63 -20.71 -0.20 -6.25 16 17 C -0.38 -11.35 9.65 30.92 0.30 -11.05 16 18 H 0.10 2.88 6.86 -52.49 -0.36 2.52 16 19 C 0.04 1.19 5.49 -17.53 -0.10 1.09 16 20 N -0.87 -25.32 13.67 55.48 0.76 -24.56 16 21 Si 0.94 21.46 29.55 -169.99 -5.02 16.43 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 25 C 0.13 2.26 5.07 -3.71 -0.02 2.24 16 26 H 0.06 0.35 6.59 -51.93 -0.34 0.01 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.41 6.63 -51.93 -0.34 0.07 16 33 H 0.06 0.45 7.01 -51.93 -0.36 0.09 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 0.62 5.27 -51.93 -0.27 0.35 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.27 7.18 8.31 -40.82 -0.34 6.85 16 41 H 0.10 1.93 7.00 -51.93 -0.36 1.57 16 42 H 0.08 1.35 7.96 -51.93 -0.41 0.93 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -34.81 338.14 -6.48 -41.29 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -6.58 Total: 0.36 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.18 Total: 1.64 kcal Atomic # 7 Polarization: -33.66 SS G_CDS: 0.25 Total: -33.41 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.40 Total: -31.40 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.81 -6.48 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726029656.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.789 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds