Wall clock time and date at job start Tue Mar 31 2020 05:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47191 * 2 1 4 4 H 1.08999 * 109.47151 * 55.00391 * 3 2 1 5 5 C 1.52999 * 109.47413 * 294.99626 * 3 2 1 6 6 C 1.50708 * 109.47139 * 174.99786 * 3 2 1 7 7 O 1.21285 * 119.99800 * 15.40789 * 6 3 2 8 8 N 1.34769 * 120.00231 * 195.40453 * 6 3 2 9 9 C 1.46927 * 120.63462 * 185.44224 * 8 6 3 10 10 C 1.53194 * 108.77568 * 233.58910 * 9 8 6 11 11 C 1.53034 * 109.31094 * 305.36051 * 10 9 8 12 12 C 1.53040 * 109.54014 * 61.37073 * 11 10 9 13 13 H 1.09000 * 109.49876 * 58.61166 * 12 11 10 14 14 C 1.50702 * 109.49970 * 178.68271 * 12 11 10 15 15 O 1.21209 * 119.99690 * 119.99498 * 14 12 11 16 16 O 1.34309 * 119.99907 * 300.00008 * 14 12 11 17 17 C 1.34912 * 117.00037 * 180.02562 * 16 14 12 18 18 H 1.07997 * 120.00211 * 359.97438 * 17 16 14 19 19 C 1.38758 * 120.00220 * 180.02562 * 17 16 14 20 20 N 1.31446 * 119.99754 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00175 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47062 * 59.99669 * 21 19 17 23 23 H 1.48492 * 109.47056 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46953 * 299.99587 * 21 19 17 25 25 C 1.46925 * 120.63073 * 5.16233 * 8 6 3 26 26 H 1.09001 * 109.47706 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47327 * 300.00026 * 1 2 3 28 28 H 1.09002 * 109.47210 * 60.00089 * 1 2 3 29 29 H 1.08999 * 109.47327 * 239.99973 * 2 1 3 30 30 H 1.09002 * 109.47210 * 119.99911 * 2 1 3 31 31 H 1.08996 * 109.47703 * 181.28212 * 5 3 2 32 32 H 1.08999 * 109.47115 * 301.28489 * 5 3 2 33 33 H 1.08997 * 109.46870 * 61.27917 * 5 3 2 34 34 H 1.09000 * 109.58044 * 353.37244 * 9 8 6 35 35 H 1.08996 * 109.58877 * 113.79598 * 9 8 6 36 36 H 1.09000 * 109.50085 * 65.31334 * 10 9 8 37 37 H 1.09004 * 109.49156 * 185.37752 * 10 9 8 38 38 H 1.09005 * 109.45629 * 181.39017 * 11 10 9 39 39 H 1.09003 * 109.46444 * 301.34291 * 11 10 9 40 40 H 0.96992 * 119.99987 * 180.02562 * 20 19 17 41 41 H 1.08994 * 109.59056 * 246.19958 * 25 8 6 42 42 H 1.09004 * 109.58617 * 6.62988 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1680 0.4247 -0.0748 8 7 4.1894 2.5788 0.4554 9 6 5.6578 2.6275 0.4642 10 6 6.1260 3.1396 1.8300 11 6 5.4509 4.4807 2.1262 12 6 3.9333 4.2897 2.1764 13 1 3.6839 3.5579 2.9447 14 6 3.2714 5.6043 2.5001 15 8 2.4813 6.0929 1.7214 16 8 3.5569 6.2345 3.6513 17 6 2.9295 7.4068 3.8798 18 1 2.2339 7.7978 3.1521 19 6 3.1787 8.1107 5.0493 20 7 4.0258 7.6351 5.9348 21 14 2.3105 9.7342 5.3653 22 1 0.8420 9.5146 5.3848 23 1 2.7461 10.2817 6.6751 24 1 2.6529 10.6967 4.2875 25 6 3.4403 3.7922 0.8090 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0182 3.1470 -1.3172 32 1 2.0511 1.5744 -2.1502 33 1 0.5484 2.1455 -1.3862 34 1 6.0575 1.6281 0.2921 35 1 6.0058 3.3022 -0.3179 36 1 5.8560 2.4182 2.6012 37 1 7.2080 3.2712 1.8177 38 1 5.8013 4.8592 3.0865 39 1 5.7014 5.1946 1.3415 40 1 4.1997 8.1269 6.7524 41 1 3.6110 4.5600 0.0545 42 1 2.3763 3.5617 0.8645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726029657.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:04 Heat of formation + Delta-G solvation = -138.227984 kcal Electronic energy + Delta-G solvation = -23190.713231 eV Core-core repulsion = 19749.333345 eV Total energy + Delta-G solvation = -3441.379887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.49656 -39.14696 -37.27137 -35.55193 -35.14699 -32.94519 -32.15606 -31.24240 -29.64748 -25.97413 -25.78293 -24.72279 -23.81567 -22.10295 -20.52272 -19.69305 -18.73469 -17.77793 -17.32245 -16.42221 -15.99349 -15.45238 -14.91702 -14.82590 -14.52914 -14.44343 -14.21689 -13.96035 -13.57160 -13.18779 -12.98991 -12.79868 -12.55623 -12.42967 -12.16446 -11.80651 -11.66454 -11.65047 -11.33649 -11.20041 -11.00036 -10.84375 -10.75978 -10.70899 -10.58938 -10.50129 -10.37590 -9.85128 -9.57236 -9.07254 -8.62578 -8.57669 -6.45733 -4.13886 2.64053 2.95780 3.08415 3.16196 3.19953 3.44494 3.89496 4.33263 4.59473 4.67378 4.80969 4.83637 4.99402 5.05359 5.11170 5.16644 5.23544 5.27575 5.37436 5.39091 5.48992 5.58698 5.64985 5.72814 5.78615 5.84486 5.88156 5.91840 5.96345 5.97143 6.07756 6.17106 6.24343 6.35562 6.47239 6.53216 6.75126 7.34392 7.41182 7.89908 8.19064 8.63732 9.02950 9.79286 10.71876 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021636 B = 0.004163 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.817765 B = 6724.685253 C = 7529.489068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.115 4.115 4 H 0.097 0.903 5 C -0.144 4.144 6 C 0.523 3.477 7 O -0.548 6.548 8 N -0.610 5.610 9 C 0.108 3.892 10 C -0.131 4.131 11 C -0.111 4.111 12 C -0.085 4.085 13 H 0.098 0.902 14 C 0.403 3.597 15 O -0.558 6.558 16 O -0.209 6.209 17 C -0.384 4.384 18 H 0.095 0.905 19 C 0.044 3.956 20 N -0.864 5.864 21 Si 0.943 3.057 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.270 1.270 25 C 0.126 3.874 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.270 0.730 41 H 0.081 0.919 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -10.582 -9.842 14.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.141 4.141 3 C -0.136 4.136 4 H 0.115 0.885 5 C -0.202 4.202 6 C 0.311 3.689 7 O -0.426 6.426 8 N -0.343 5.343 9 C -0.014 4.014 10 C -0.170 4.170 11 C -0.149 4.149 12 C -0.105 4.105 13 H 0.116 0.884 14 C 0.249 3.751 15 O -0.455 6.455 16 O -0.115 6.115 17 C -0.460 4.460 18 H 0.113 0.887 19 C -0.161 4.161 20 N -0.500 5.500 21 Si 0.768 3.232 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.195 1.195 25 C 0.003 3.997 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.100 0.900 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.703 -10.930 -9.913 14.772 hybrid contribution -0.387 0.989 0.369 1.124 sum -1.090 -9.940 -9.543 13.823 Atomic orbital electron populations 1.21847 0.95454 1.01743 1.02115 1.21334 0.95423 0.94169 1.03208 1.21406 0.91916 0.99303 1.01014 0.88490 1.21810 1.02335 1.00661 0.95361 1.20690 0.90205 0.82359 0.75606 1.90649 1.69067 1.31847 1.51015 1.48168 1.07046 1.11537 1.67549 1.21657 0.79516 1.02724 0.97533 1.21924 1.00556 0.97460 0.97012 1.21505 0.92395 0.97047 1.03942 1.21155 0.96787 0.94404 0.98149 0.88408 1.22864 0.82951 0.87191 0.82133 1.90554 1.36833 1.67866 1.50286 1.83863 1.59360 1.33652 1.34668 1.21177 1.24300 0.95157 1.05390 0.88713 1.25330 0.96668 0.99474 0.94615 1.69978 1.32459 1.38669 1.08942 0.85752 0.79395 0.80183 0.77910 1.19467 1.20364 1.19467 1.21709 0.96395 0.86126 0.95443 0.92584 0.92530 0.92374 0.91192 0.91574 0.91715 0.92178 0.91060 0.89065 0.91464 0.91289 0.90352 0.89573 0.91399 0.91981 0.90042 0.88817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.15 0.36 -1.00 16 2 C -0.10 -1.12 4.73 -26.74 -0.13 -1.25 16 3 C -0.12 -1.34 1.87 -91.77 -0.17 -1.51 16 4 H 0.10 1.11 6.58 -51.93 -0.34 0.77 16 5 C -0.14 -1.47 8.70 37.16 0.32 -1.15 16 6 C 0.52 7.44 6.89 -10.99 -0.08 7.36 16 7 O -0.55 -9.25 15.51 5.55 0.09 -9.16 16 8 N -0.61 -8.38 2.97 -172.50 -0.51 -8.89 16 9 C 0.11 1.35 6.44 -3.71 -0.02 1.33 16 10 C -0.13 -1.63 6.08 -26.61 -0.16 -1.80 16 11 C -0.11 -1.72 5.10 -26.69 -0.14 -1.85 16 12 C -0.08 -1.46 2.79 -91.42 -0.26 -1.72 16 13 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 14 C 0.40 9.34 7.21 36.01 0.26 9.60 16 15 O -0.56 -13.94 15.16 -19.05 -0.29 -14.23 16 16 O -0.21 -5.74 9.63 -20.67 -0.20 -5.94 16 17 C -0.38 -11.02 9.65 30.92 0.30 -10.73 16 18 H 0.10 2.73 6.86 -52.49 -0.36 2.37 16 19 C 0.04 1.20 5.49 -17.52 -0.10 1.10 16 20 N -0.86 -24.73 13.67 55.48 0.76 -23.97 16 21 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 25 C 0.13 1.86 4.05 -3.48 -0.01 1.84 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 6.59 -51.93 -0.34 0.12 16 29 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.69 7.01 -51.93 -0.36 0.33 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.62 6.63 -51.93 -0.34 0.28 16 34 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.48 8.09 -51.93 -0.42 1.06 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 41 H 0.08 1.23 7.97 -51.93 -0.41 0.82 16 42 H 0.09 1.33 5.27 -51.93 -0.27 1.05 16 LS Contribution 338.14 15.07 5.10 5.10 Total: -1.00 -32.49 338.14 -6.49 -38.98 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.58 Total: 2.07 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: 0.18 Total: 0.24 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.25 Total: -32.86 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.40 Total: -29.32 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.49 -6.49 -38.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726029657.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.252 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds