Wall clock time and date at job start Tue Mar 31 2020 06:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46960 * 2 1 4 4 O 1.45194 * 109.47215 * 120.00546 * 2 1 3 5 5 C 1.34232 * 116.99921 * 269.99748 * 4 2 1 6 6 O 1.20820 * 120.00134 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00180 * 180.02562 * 5 4 2 8 8 C 1.54964 * 110.92533 * 66.53754 * 7 5 4 9 9 C 1.54261 * 104.16263 * 156.29649 * 8 7 5 10 10 C 1.53882 * 106.63812 * 336.45123 * 9 8 7 11 11 C 1.54262 * 106.60007 * 359.97372 * 10 9 8 12 12 C 1.50706 * 109.46823 * 240.00679 * 2 1 3 13 13 O 1.21285 * 119.99705 * 256.02125 * 12 2 1 14 14 N 1.34773 * 120.00309 * 76.02855 * 12 2 1 15 15 C 1.46500 * 119.99982 * 5.35834 * 14 12 2 16 16 C 1.46494 * 119.99877 * 185.36381 * 14 12 2 17 17 C 1.50701 * 109.47061 * 90.00087 * 16 14 12 18 18 H 1.07996 * 120.00201 * 359.97438 * 17 16 14 19 19 C 1.37882 * 119.99719 * 180.02562 * 17 16 14 20 20 N 1.31510 * 120.00015 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99754 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47216 * 59.99470 * 21 19 17 23 23 H 1.48500 * 109.46986 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46937 * 299.99721 * 21 19 17 25 25 H 1.09000 * 109.47408 * 186.13633 * 1 2 3 26 26 H 1.09000 * 109.47295 * 306.13441 * 1 2 3 27 27 H 1.08998 * 109.47363 * 66.13134 * 1 2 3 28 28 H 1.09008 * 110.67108 * 303.23507 * 7 5 4 29 29 H 1.09005 * 110.47574 * 37.64213 * 8 7 5 30 30 H 1.08995 * 110.53123 * 274.98259 * 8 7 5 31 31 H 1.08998 * 110.03573 * 217.13968 * 9 8 7 32 32 H 1.09008 * 110.02969 * 95.75611 * 9 8 7 33 33 H 1.09002 * 110.03241 * 119.25916 * 10 9 8 34 34 H 1.08996 * 110.02785 * 240.63705 * 10 9 8 35 35 H 1.08994 * 110.49046 * 142.29116 * 11 10 9 36 36 H 1.09006 * 110.48323 * 264.80212 * 11 10 9 37 37 H 1.09002 * 109.47163 * 84.82204 * 15 14 12 38 38 H 1.08998 * 109.47257 * 204.82363 * 15 14 12 39 39 H 1.09007 * 109.47282 * 324.82990 * 15 14 12 40 40 H 1.09003 * 109.47195 * 209.99649 * 16 14 12 41 41 H 1.08996 * 109.47502 * 329.99737 * 16 14 12 42 42 H 0.97009 * 119.99802 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2172 0.0639 2.2811 6 8 1.9974 1.2515 2.2507 7 6 2.7194 -0.5772 3.5491 8 6 4.1657 -1.1035 3.3680 9 6 4.7338 -1.1470 4.8015 10 6 3.9144 -0.1426 5.6308 11 6 2.8767 0.4774 4.6724 12 6 2.0323 -0.7103 -1.2306 13 8 2.4736 -1.8366 -1.1430 14 7 1.9912 -0.0940 -2.4284 15 6 1.5689 1.3060 -2.5178 16 6 2.3687 -0.8240 -3.6411 17 6 1.1504 -1.4914 -4.2254 18 1 0.1910 -1.3831 -3.7416 19 6 1.2610 -2.2414 -5.3772 20 7 2.4294 -2.3737 -5.9660 21 14 -0.2490 -3.0693 -6.1010 22 1 -1.2639 -2.0395 -6.4394 23 1 0.1337 -3.8092 -7.3304 24 1 -0.8173 -4.0170 -5.1090 25 1 -0.3634 -1.0218 0.1098 26 1 -0.3634 0.6060 0.8300 27 1 -0.3634 0.4158 -0.9397 28 1 2.0533 -1.3806 3.8640 29 1 4.7456 -0.4194 2.7484 30 1 4.1572 -2.1017 2.9304 31 1 5.7845 -0.8572 4.7957 32 1 4.6255 -2.1494 5.2157 33 1 3.4079 -0.6577 6.4470 34 1 4.5677 0.6341 6.0282 35 1 1.9279 0.6323 5.1859 36 1 3.2474 1.4184 4.2658 37 1 2.4228 1.9560 -2.3266 38 1 1.1774 1.5045 -3.5154 39 1 0.7924 1.4993 -1.7775 40 1 2.7860 -0.1281 -4.3691 41 1 3.1135 -1.5801 -3.3930 42 1 2.5070 -2.9011 -6.7766 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728913619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:17 Heat of formation + Delta-G solvation = -134.557222 kcal Electronic energy + Delta-G solvation = -22824.861794 eV Core-core repulsion = 19383.641083 eV Total energy + Delta-G solvation = -3441.220711 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81307 -39.10560 -37.77463 -36.23805 -34.88153 -32.84025 -31.67933 -29.63807 -28.94181 -27.78865 -26.07075 -24.62902 -23.27962 -21.86786 -20.58397 -19.99834 -18.79740 -17.92131 -16.78991 -16.55263 -16.33664 -15.96522 -15.51753 -15.22443 -14.70041 -14.36225 -14.02516 -13.68301 -13.51079 -13.17111 -12.72445 -12.53079 -12.22440 -12.14853 -12.06864 -11.76976 -11.54506 -11.48853 -11.42091 -11.31919 -11.23660 -11.03663 -10.93944 -10.71201 -10.67770 -10.55944 -10.33988 -10.18737 -9.68759 -8.90638 -8.46202 -7.72606 -6.07273 -4.12814 2.17465 2.52244 3.23886 3.30441 3.34970 3.38787 3.88466 4.18582 4.31938 4.41593 4.54099 4.81609 4.93682 5.06425 5.08723 5.11705 5.16010 5.22156 5.24236 5.27237 5.37696 5.53242 5.62070 5.66870 5.69518 5.73486 5.81587 5.86135 5.95362 6.01353 6.07644 6.08463 6.24054 6.47609 6.98455 7.39160 7.46118 7.75448 7.88720 8.18454 8.29056 8.82924 8.98137 9.52318 11.00787 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.030391 B = 0.003511 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.101825 B = 7973.646781 C = 8240.377636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.069 3.931 3 H 0.101 0.899 4 O -0.324 6.324 5 C 0.467 3.533 6 O -0.512 6.512 7 C -0.088 4.088 8 C -0.113 4.113 9 C -0.124 4.124 10 C -0.125 4.125 11 C -0.108 4.108 12 C 0.510 3.490 13 O -0.520 6.520 14 N -0.597 5.597 15 C 0.074 3.926 16 C 0.246 3.754 17 C -0.531 4.531 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 7.036 19.672 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 H 0.119 0.881 4 O -0.239 6.239 5 C 0.310 3.690 6 O -0.401 6.401 7 C -0.107 4.107 8 C -0.151 4.151 9 C -0.162 4.162 10 C -0.162 4.162 11 C -0.146 4.146 12 C 0.294 3.706 13 O -0.396 6.396 14 N -0.330 5.330 15 C -0.070 4.070 16 C 0.127 3.873 17 C -0.570 4.570 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.093 0.907 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.754 6.692 19.481 20.612 hybrid contribution -0.979 -0.254 -0.647 1.201 sum -0.225 6.438 18.834 19.905 Atomic orbital electron populations 1.22153 0.92170 1.04091 1.03736 1.22662 0.96032 0.97345 0.82908 0.88090 1.86650 1.76206 1.41480 1.19569 1.23693 0.73877 0.85859 0.85537 1.90621 1.48402 1.16696 1.84362 1.22075 0.99204 0.99775 0.89662 1.22359 0.92521 1.02554 0.97634 1.22141 0.99776 0.99719 0.94527 1.22149 0.97463 0.98611 0.97996 1.22321 0.99808 0.98030 0.94432 1.19775 0.80175 0.86836 0.83795 1.90693 1.45150 1.18407 1.85346 1.48078 1.65322 1.11906 1.07734 1.21831 0.98987 0.82675 1.03525 1.19357 0.96674 0.92061 0.79177 1.21396 0.94782 1.31568 1.09226 0.92406 1.24939 0.96276 0.96099 0.96717 1.69924 1.23226 1.40389 1.19693 0.86540 0.82750 0.79633 0.78398 1.20214 1.21131 1.20124 0.90661 0.91329 0.89512 0.86827 0.90988 0.89787 0.91330 0.91292 0.91510 0.91377 0.90914 0.90055 0.93453 0.90069 0.92262 0.94648 0.93582 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.19 37.16 0.34 -2.06 16 2 C 0.07 1.19 2.14 -27.88 -0.06 1.13 16 3 H 0.10 1.60 6.31 -51.93 -0.33 1.28 16 4 O -0.32 -5.53 9.47 -45.75 -0.43 -5.96 16 5 C 0.47 6.75 7.25 36.01 0.26 7.01 16 6 O -0.51 -8.12 14.95 -18.75 -0.28 -8.40 16 7 C -0.09 -0.94 3.39 -89.74 -0.30 -1.24 16 8 C -0.11 -1.14 6.28 -25.03 -0.16 -1.30 16 9 C -0.12 -0.95 6.80 -25.61 -0.17 -1.12 16 10 C -0.12 -0.89 6.80 -25.61 -0.17 -1.07 16 11 C -0.11 -0.98 5.90 -25.08 -0.15 -1.13 16 12 C 0.51 11.11 6.95 -10.98 -0.08 11.03 16 13 O -0.52 -13.61 16.13 -13.54 -0.22 -13.83 16 14 N -0.60 -12.85 2.86 -182.95 -0.52 -13.37 16 15 C 0.07 1.18 9.79 59.85 0.59 1.77 16 16 C 0.25 6.45 5.18 -5.20 -0.03 6.42 16 17 C -0.53 -14.95 9.39 -34.44 -0.32 -15.27 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 21 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 1.21 6.33 -51.93 -0.33 0.88 16 28 H 0.11 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.84 7.45 -51.93 -0.39 0.45 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.06 0.80 4.92 -51.92 -0.26 0.54 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.36 7.35 -51.93 -0.38 0.98 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -33.76 346.12 -7.58 -41.34 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.71 Total: -1.76 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -0.35 Total: 5.82 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.21 Total: -39.10 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.93 Total: -28.19 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.76 -7.58 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728913619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.215 kcal (2) G-P(sol) polarization free energy of solvation -33.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds