Wall clock time and date at job start Tue Mar 31 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47356 * 2 1 4 4 C 1.53000 * 109.47433 * 239.99159 * 2 1 3 5 5 C 1.53004 * 109.47064 * 300.00840 * 4 2 1 6 6 C 1.53009 * 109.46645 * 299.99414 * 5 4 2 7 7 C 1.53000 * 109.46912 * 60.00492 * 6 5 4 8 8 C 1.52995 * 109.47176 * 299.99421 * 7 6 5 9 9 H 1.08998 * 109.47626 * 300.00404 * 8 7 6 10 10 C 1.53000 * 109.47176 * 179.97438 * 8 7 6 11 11 C 1.50706 * 109.46894 * 65.00161 * 10 8 7 12 12 O 1.20820 * 119.99714 * 0.02562 * 11 10 8 13 13 O 1.34223 * 119.99666 * 179.97438 * 11 10 8 14 14 C 1.45209 * 116.99725 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46951 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00006 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99773 * 179.72591 * 17 15 14 19 19 H 1.08002 * 119.99671 * 0.27660 * 18 17 15 20 20 C 1.38950 * 120.00030 * 180.27703 * 18 17 15 21 21 N 1.31414 * 119.99926 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99969 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47459 * 59.99812 * 22 20 18 24 24 H 1.48502 * 109.47317 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47211 * 300.00250 * 22 20 18 26 26 H 1.08999 * 109.47258 * 300.00597 * 1 2 3 27 27 H 1.09001 * 109.46767 * 60.00588 * 1 2 3 28 28 H 1.09004 * 109.47182 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46938 * 60.00357 * 4 2 1 30 30 H 1.08990 * 109.47317 * 180.02562 * 4 2 1 31 31 H 1.08990 * 109.47490 * 59.99571 * 5 4 2 32 32 H 1.09004 * 109.47140 * 180.02562 * 5 4 2 33 33 H 1.08999 * 109.46382 * 180.02562 * 6 5 4 34 34 H 1.08990 * 109.47304 * 300.00270 * 6 5 4 35 35 H 1.09001 * 109.46938 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47173 * 60.00102 * 7 6 5 37 37 H 1.08997 * 109.47366 * 305.00671 * 10 8 7 38 38 H 1.08997 * 109.47126 * 185.00153 * 10 8 7 39 39 H 1.09003 * 109.46563 * 60.00429 * 14 13 11 40 40 H 1.08993 * 109.46953 * 300.00733 * 14 13 11 41 41 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 42 42 H 0.96999 * 119.99863 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 1.5299 -2.1639 -1.2490 6 6 2.0399 -2.8850 0.0004 7 6 1.5299 -2.1636 1.2495 8 6 2.0399 -0.7212 1.2494 9 1 3.1299 -0.7212 1.2495 10 6 1.5293 0.0004 2.4982 11 6 2.1296 -0.6347 3.7260 12 8 2.8883 -1.5682 3.6137 13 8 1.8222 -0.1625 4.9443 14 6 2.4369 -0.8232 6.0818 15 6 1.9783 -0.1610 7.3555 16 8 1.2088 0.7754 7.3091 17 7 2.4226 -0.6100 8.5461 18 6 2.0098 -0.0039 9.7046 19 1 1.3252 0.8303 9.6632 20 6 2.4723 -0.4631 10.9318 21 7 3.3057 -1.4779 10.9820 22 14 1.9093 0.3621 12.5102 23 1 0.4321 0.2602 12.6225 24 1 2.5423 -0.3101 13.6732 25 1 2.3065 1.7930 12.4896 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.6768 -0.2077 -2.1392 30 1 3.1300 -0.7218 -1.2489 31 1 0.4400 -2.1639 -1.2491 32 1 1.8937 -2.6780 -2.1387 33 1 1.6769 -3.9128 0.0002 34 1 3.1299 -2.8851 0.0004 35 1 1.8928 -2.6776 2.1396 36 1 0.4399 -2.1637 1.2495 37 1 0.4430 -0.0765 2.5437 38 1 1.8178 1.0506 2.4544 39 1 3.5215 -0.7475 6.0034 40 1 2.1459 -1.8736 6.0927 41 1 3.0377 -1.3591 8.5832 42 1 3.6283 -1.7987 11.8387 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:15 Heat of formation + Delta-G solvation = -155.196741 kcal Electronic energy + Delta-G solvation = -22275.553555 eV Core-core repulsion = 18833.437847 eV Total energy + Delta-G solvation = -3442.115707 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62903 -39.26553 -38.05467 -36.05825 -33.98871 -33.11081 -31.87830 -31.36966 -28.99587 -27.77177 -26.35287 -24.55686 -22.64814 -22.11370 -20.38771 -19.55609 -18.62851 -18.05074 -17.46133 -16.46675 -16.25288 -15.94623 -15.49162 -14.89968 -14.56785 -14.39135 -14.18684 -13.93147 -13.77855 -13.19233 -12.99495 -12.77555 -12.61978 -12.34140 -11.91649 -11.89259 -11.76723 -11.61183 -11.53012 -11.25005 -11.10572 -10.93593 -10.53946 -10.48541 -10.40970 -10.35153 -10.28549 -10.13181 -9.89442 -9.58768 -8.50570 -8.07465 -6.49174 -3.91265 2.38858 2.79766 3.15972 3.23093 3.28082 3.75233 4.12155 4.38355 4.46995 4.49786 4.74834 4.90811 4.99497 5.01140 5.11759 5.15803 5.16169 5.22276 5.31991 5.39260 5.43821 5.49915 5.57251 5.61502 5.66029 5.72382 5.76052 5.83031 5.89693 5.95946 6.01955 6.05850 6.09555 6.15990 6.31385 6.37030 6.74969 7.48235 7.89732 8.00630 8.49772 9.07840 9.40401 9.90593 10.68071 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.047994 B = 0.002716 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.262548 B =10307.094296 C =10669.898136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.086 4.086 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.116 4.116 7 C -0.125 4.125 8 C -0.069 4.069 9 H 0.080 0.920 10 C -0.112 4.112 11 C 0.457 3.543 12 O -0.513 6.513 13 O -0.328 6.328 14 C 0.061 3.939 15 C 0.438 3.562 16 O -0.577 6.577 17 N -0.553 5.553 18 C -0.303 4.303 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.898 5.898 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.272 1.272 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.395 0.605 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.957 -1.326 -22.251 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.105 4.105 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.154 4.154 7 C -0.163 4.163 8 C -0.088 4.088 9 H 0.098 0.902 10 C -0.149 4.149 11 C 0.300 3.700 12 O -0.402 6.402 13 O -0.243 6.243 14 C -0.017 4.017 15 C 0.223 3.777 16 O -0.461 6.461 17 N -0.191 5.191 18 C -0.432 4.432 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.198 1.198 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.228 0.772 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.159 -1.071 -22.099 22.230 hybrid contribution 0.322 -0.256 0.949 1.034 sum -1.837 -1.327 -21.150 21.271 Atomic orbital electron populations 1.22033 0.95228 1.02337 1.01750 1.21122 0.96108 0.99070 0.94186 0.91032 1.21536 1.00599 0.95709 0.97164 1.21597 1.00946 0.95610 0.97808 1.21484 1.00862 0.98654 0.94363 1.21781 1.00406 0.94994 0.99082 1.21007 1.01087 0.94998 0.91670 0.90181 1.21539 1.02819 1.01467 0.89092 1.23820 0.79139 0.81717 0.85339 1.90612 1.34431 1.27852 1.87283 1.86562 1.65753 1.57576 1.14371 1.22715 0.98158 0.96834 0.83987 1.19353 0.86862 0.87515 0.83965 1.90558 1.38390 1.30539 1.86571 1.41708 1.42010 1.31234 1.04108 1.19679 1.26319 1.14822 0.82377 0.87685 1.25312 0.96349 0.96446 0.99656 1.69608 1.31725 1.25140 1.27376 0.85856 0.78962 0.79152 0.79900 1.19750 1.20870 1.19756 0.92281 0.92850 0.91872 0.92075 0.91994 0.91757 0.92440 0.92255 0.92033 0.90131 0.92055 0.87517 0.87663 0.89654 0.89658 0.77164 0.91581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 8.15 37.16 0.30 -0.85 16 2 C -0.09 -0.68 2.72 -90.61 -0.25 -0.92 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.83 5.45 -26.73 -0.15 -0.97 16 5 C -0.12 -0.92 5.65 -26.72 -0.15 -1.07 16 6 C -0.12 -1.04 5.92 -26.73 -0.16 -1.19 16 7 C -0.13 -1.29 4.67 -26.73 -0.12 -1.42 16 8 C -0.07 -0.68 1.61 -90.62 -0.15 -0.83 16 9 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 10 C -0.11 -1.23 4.78 -27.88 -0.13 -1.36 16 11 C 0.46 7.04 7.67 36.01 0.28 7.31 16 12 O -0.51 -8.63 13.72 -18.75 -0.26 -8.89 16 13 O -0.33 -6.16 9.76 -45.88 -0.45 -6.61 16 14 C 0.06 1.17 5.94 36.00 0.21 1.39 16 15 C 0.44 10.71 7.86 -10.99 -0.09 10.62 16 16 O -0.58 -16.21 16.08 -14.11 -0.23 -16.44 16 17 N -0.55 -14.14 5.29 -10.96 -0.06 -14.20 16 18 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 19 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 22 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 4.81 -51.93 -0.25 0.22 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.03 5.96 -51.93 -0.31 0.72 16 36 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 37 H 0.11 1.05 6.70 -51.93 -0.35 0.71 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 40 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 41 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 42 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -31.61 333.98 -7.28 -38.89 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -6.39 Total: 7.22 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -0.64 Total: 2.72 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.67 Total: -37.71 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -0.93 Total: -31.93 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.61 -7.28 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.307 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds