Wall clock time and date at job start Tue Mar 31 2020 06:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46872 * 2 1 4 4 C 1.52999 * 109.47009 * 239.99992 * 2 1 3 5 5 C 1.52998 * 109.47239 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47045 * 59.99596 * 5 4 2 7 7 C 1.52999 * 109.47432 * 300.00286 * 6 5 4 8 8 C 1.52995 * 109.47400 * 119.99584 * 2 1 3 9 9 H 1.09002 * 109.46769 * 60.00352 * 8 2 1 10 10 C 1.52999 * 109.47373 * 300.00185 * 8 2 1 11 11 C 1.50705 * 109.47058 * 174.99751 * 10 8 2 12 12 O 1.20817 * 120.00125 * 0.02562 * 11 10 8 13 13 O 1.34229 * 119.99673 * 179.97438 * 11 10 8 14 14 C 1.45206 * 116.99690 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46768 * 180.02562 * 14 13 11 16 16 O 1.21290 * 120.00285 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99541 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99649 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00266 * 359.97438 * 18 17 15 20 20 C 1.38949 * 120.00025 * 179.97438 * 18 17 15 21 21 N 1.31406 * 120.00069 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99709 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 269.99702 * 22 20 18 24 24 H 1.48503 * 109.47261 * 149.99882 * 22 20 18 25 25 H 1.48500 * 109.47454 * 29.99875 * 22 20 18 26 26 H 1.09004 * 109.46851 * 300.00069 * 1 2 3 27 27 H 1.08994 * 109.47208 * 59.99784 * 1 2 3 28 28 H 1.09001 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47035 * 60.00026 * 4 2 1 30 30 H 1.08999 * 109.46885 * 300.00023 * 4 2 1 31 31 H 1.09002 * 109.46991 * 300.00221 * 5 4 2 32 32 H 1.08998 * 109.47738 * 179.97438 * 5 4 2 33 33 H 1.08996 * 109.47391 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46715 * 60.00457 * 6 5 4 35 35 H 1.08999 * 109.46885 * 299.99522 * 7 6 5 36 36 H 1.08994 * 109.46953 * 179.97438 * 7 6 5 37 37 H 1.09001 * 109.47338 * 55.00040 * 10 8 2 38 38 H 1.08999 * 109.47078 * 294.99802 * 10 8 2 39 39 H 1.08996 * 109.46914 * 60.00658 * 14 13 11 40 40 H 1.08999 * 109.46990 * 300.00400 * 14 13 11 41 41 H 0.96993 * 120.00289 * 359.97438 * 17 15 14 42 42 H 0.97008 * 120.00016 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4415 -0.0003 7 6 3.5705 -0.7203 1.2489 8 6 2.0401 -0.7211 1.2492 9 1 1.6768 -1.7488 1.2492 10 6 1.5301 0.0001 2.4985 11 6 1.9288 -0.7782 3.7258 12 8 2.5569 -1.8041 3.6130 13 8 1.5871 -0.3310 4.9444 14 6 2.0042 -1.1321 6.0814 15 6 1.5341 -0.4789 7.3556 16 8 0.9094 0.5598 7.3099 17 7 1.8087 -1.0484 8.5459 18 6 1.3814 -0.4539 9.7050 19 1 0.8252 0.4710 9.6644 20 6 1.6640 -1.0412 10.9321 21 7 1.2549 -0.4712 12.0432 22 14 2.6267 -2.6405 11.0024 23 1 1.6852 -3.7878 10.9504 24 1 3.4042 -2.6952 12.2665 25 1 3.5561 -2.7101 9.8463 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6766 -0.2074 -2.1392 30 1 1.6766 -1.7489 -1.2492 31 1 3.9329 0.3071 -1.2498 32 1 3.9334 -1.2349 -2.1393 33 1 5.1705 -1.4416 -0.0007 34 1 3.7176 -2.4694 -0.0001 35 1 3.9336 0.3075 1.2487 36 1 3.9339 -1.2341 2.1389 37 1 0.4438 0.0783 2.4549 38 1 1.9647 0.9987 2.5444 39 1 3.0914 -1.2093 6.0921 40 1 1.5699 -2.1286 6.0026 41 1 2.3085 -1.8788 8.5824 42 1 1.4519 -0.8815 12.8999 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245569.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:17 Heat of formation + Delta-G solvation = -151.566265 kcal Electronic energy + Delta-G solvation = -22255.398394 eV Core-core repulsion = 18813.440116 eV Total energy + Delta-G solvation = -3441.958278 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.65485 -39.13658 -38.21657 -36.15252 -34.05281 -33.41971 -32.28475 -31.79124 -29.12890 -27.75181 -26.17239 -24.43762 -22.62441 -21.44839 -20.43490 -19.90308 -19.62395 -18.57083 -17.56093 -16.53734 -16.28924 -15.60755 -15.22179 -14.95299 -14.89325 -14.56297 -14.31353 -14.01730 -13.77917 -13.29201 -12.89875 -12.76687 -12.45757 -12.37936 -12.20478 -12.14916 -11.99738 -11.78669 -11.71757 -11.25867 -11.20818 -11.06128 -10.66153 -10.64472 -10.60986 -10.46538 -10.19802 -10.05280 -9.94537 -9.67012 -8.65327 -8.28705 -6.38749 -3.91567 2.30177 2.69326 2.99152 3.03753 3.12364 3.56785 4.04200 4.33220 4.34451 4.44128 4.57257 4.77786 4.87317 4.95650 5.10112 5.11655 5.13352 5.23008 5.25981 5.32219 5.35556 5.44111 5.48934 5.54598 5.57017 5.57905 5.68889 5.69848 5.81180 5.85342 5.95688 5.97629 6.02216 6.09528 6.22987 6.30507 6.63166 7.45755 7.87157 8.01936 8.48756 8.84405 9.30645 9.66750 10.73590 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036975 B = 0.002936 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.081741 B = 9534.873799 C =10040.838833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.069 4.069 9 H 0.080 0.920 10 C -0.114 4.114 11 C 0.458 3.542 12 O -0.513 6.513 13 O -0.327 6.327 14 C 0.058 3.942 15 C 0.448 3.552 16 O -0.557 6.557 17 N -0.580 5.580 18 C -0.308 4.308 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.875 5.875 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.268 1.268 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.373 0.627 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 -3.028 -25.236 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.088 4.088 9 H 0.099 0.901 10 C -0.151 4.151 11 C 0.301 3.699 12 O -0.402 6.402 13 O -0.241 6.241 14 C -0.020 4.020 15 C 0.233 3.767 16 O -0.439 6.439 17 N -0.220 5.220 18 C -0.436 4.436 19 H 0.140 0.860 20 C -0.159 4.159 21 N -0.515 5.515 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.194 1.194 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.539 -2.619 -25.011 25.396 hybrid contribution 0.854 -1.426 0.400 1.710 sum 4.394 -4.045 -24.611 25.325 Atomic orbital electron populations 1.21955 0.95163 1.02092 1.01986 1.21156 0.95504 0.99682 0.94153 0.90902 1.21569 0.95541 1.00716 0.97156 1.21562 0.95668 1.00730 0.97869 1.21491 1.00039 0.99530 0.94351 1.21762 0.94493 1.00769 0.99117 1.21046 0.96141 0.99898 0.91672 0.90133 1.21578 1.04299 1.00240 0.88992 1.23840 0.76372 0.84393 0.85257 1.90609 1.37633 1.24717 1.87250 1.86574 1.71586 1.51640 1.14324 1.22718 1.00713 0.94422 0.84132 1.19228 0.86333 0.87588 0.83586 1.90602 1.43021 1.23977 1.86294 1.42044 1.50813 1.23557 1.05633 1.19427 1.33668 1.09357 0.81172 0.86024 1.25035 0.97626 0.98304 0.94945 1.69614 1.44938 1.39223 0.97696 0.86677 0.80437 0.83700 0.78671 1.19413 1.19958 1.19360 0.92056 0.92612 0.92551 0.92033 0.91943 0.92082 0.92292 0.92214 0.92005 0.92330 0.90080 0.87280 0.87607 0.89531 0.89525 0.79401 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.85 37.16 0.33 -0.76 16 2 C -0.09 -0.65 2.25 -90.62 -0.20 -0.85 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.79 5.20 -26.73 -0.14 -0.93 16 5 C -0.12 -0.87 5.92 -26.73 -0.16 -1.03 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 7 C -0.12 -1.22 4.95 -26.71 -0.13 -1.36 16 8 C -0.07 -0.65 1.37 -90.60 -0.12 -0.77 16 9 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 10 C -0.11 -1.19 5.07 -27.88 -0.14 -1.33 16 11 C 0.46 6.70 7.68 36.01 0.28 6.97 16 12 O -0.51 -8.17 13.72 -18.74 -0.26 -8.43 16 13 O -0.33 -5.83 9.76 -45.90 -0.45 -6.28 16 14 C 0.06 1.05 5.94 36.01 0.21 1.26 16 15 C 0.45 10.46 7.86 -10.98 -0.09 10.37 16 16 O -0.56 -15.42 16.08 -14.11 -0.23 -15.65 16 17 N -0.58 -13.87 5.09 -10.96 -0.06 -13.93 16 18 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 19 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 20 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 21 N -0.88 -25.24 13.96 55.50 0.77 -24.46 16 22 Si 0.88 19.12 27.74 -169.99 -4.71 14.41 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 26 H 0.06 0.43 6.32 -51.93 -0.33 0.10 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.99 5.96 -51.93 -0.31 0.68 16 37 H 0.11 1.01 6.17 -51.93 -0.32 0.69 16 38 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 40 H 0.09 1.39 8.13 -51.93 -0.42 0.97 16 41 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 42 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 337.44 15.07 5.09 5.09 Total: -1.00 -32.63 337.44 -7.07 -39.70 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.66 Total: 6.82 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -0.57 Total: 2.74 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.72 Total: -38.39 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.93 Total: -30.36 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.63 -7.07 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245569.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.864 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds