Wall clock time and date at job start Tue Mar 31 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08993 * 109.47194 * 2 1 4 4 C 1.52999 * 109.46991 * 120.00842 * 2 1 3 5 5 C 1.52997 * 109.46991 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47131 * 299.99311 * 5 4 2 7 7 C 1.53002 * 109.46972 * 60.00459 * 6 5 4 8 8 C 1.52997 * 109.46817 * 299.99733 * 7 6 5 9 9 H 1.09001 * 109.47502 * 300.00518 * 8 7 6 10 10 C 1.52999 * 109.47317 * 179.97438 * 8 7 6 11 11 C 1.50707 * 109.47009 * 65.00166 * 10 8 7 12 12 O 1.20828 * 119.99893 * 359.97438 * 11 10 8 13 13 O 1.34226 * 120.00081 * 180.02562 * 11 10 8 14 14 C 1.45200 * 116.99779 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47177 * 180.02562 * 14 13 11 16 16 O 1.21296 * 119.99584 * 359.97438 * 15 14 13 17 17 N 1.34778 * 120.00048 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99466 * 179.97438 * 17 15 14 19 19 H 1.07993 * 120.00439 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99392 * 179.97438 * 18 17 15 21 21 N 1.31414 * 120.00603 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99794 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47259 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46997 * 120.00486 * 22 20 18 25 25 H 1.48502 * 109.47367 * 240.00409 * 22 20 18 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 299.99712 * 1 2 3 28 28 H 1.09001 * 109.47289 * 59.99796 * 1 2 3 29 29 H 1.09002 * 109.46719 * 299.99711 * 4 2 1 30 30 H 1.08993 * 109.47839 * 59.99553 * 4 2 1 31 31 H 1.09001 * 109.47289 * 179.97438 * 5 4 2 32 32 H 1.09000 * 109.47611 * 59.99933 * 5 4 2 33 33 H 1.08996 * 109.47452 * 300.00000 * 6 5 4 34 34 H 1.09000 * 109.47054 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47070 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47407 * 59.99513 * 7 6 5 37 37 H 1.08994 * 109.47465 * 185.00197 * 10 8 7 38 38 H 1.08998 * 109.47565 * 305.00629 * 10 8 7 39 39 H 1.09004 * 109.47449 * 300.00087 * 14 13 11 40 40 H 1.08993 * 109.47165 * 59.99840 * 14 13 11 41 41 H 0.96993 * 120.00247 * 0.02562 * 17 15 14 42 42 H 0.96991 * 120.00652 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2491 5 6 3.5699 -0.7209 1.2495 6 6 4.0804 -1.4417 0.0002 7 6 3.5705 -0.7203 -1.2490 8 6 2.0405 -0.7209 -1.2493 9 1 1.6775 -1.7487 -1.2495 10 6 1.5305 0.0010 -2.4981 11 6 1.9297 -0.7763 -3.7260 12 8 2.5581 -1.8022 -3.6137 13 8 1.5880 -0.3285 -4.9443 14 6 2.0066 -1.1282 -6.0818 15 6 1.5374 -0.4739 -7.3557 16 8 0.9114 0.5640 -7.3094 17 7 1.8134 -1.0419 -8.5463 18 6 1.3860 -0.4469 -9.7051 19 1 0.8287 0.4772 -9.6640 20 6 1.6710 -1.0322 -10.9326 21 7 2.3497 -2.1565 -10.9828 22 14 1.0882 -0.2219 -12.5116 23 1 0.3505 1.0248 -12.1851 24 1 2.2608 0.1055 -13.3620 25 1 0.1904 -1.1516 -13.2430 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6766 -0.2076 2.1392 30 1 1.6766 -1.7490 1.2491 31 1 3.9333 -1.2344 2.1396 32 1 3.9330 0.3069 1.2498 33 1 3.7175 -2.4695 -0.0001 34 1 5.1704 -1.4417 0.0007 35 1 3.9346 -1.2336 -2.1390 36 1 3.9334 0.3075 -1.2487 37 1 0.4442 0.0789 -2.4547 38 1 1.9648 0.9997 -2.5434 39 1 3.0939 -1.2043 -6.0920 40 1 1.5733 -2.1252 -6.0041 41 1 2.3137 -1.8721 -8.5833 42 1 2.5490 -2.5649 -11.8397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731245573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:22 Heat of formation + Delta-G solvation = -159.048645 kcal Electronic energy + Delta-G solvation = -22195.689111 eV Core-core repulsion = 18753.406372 eV Total energy + Delta-G solvation = -3442.282739 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56924 -39.06232 -38.03350 -36.04669 -33.99144 -33.37649 -32.24090 -31.37058 -28.97045 -27.62650 -26.12297 -24.56279 -22.59773 -21.41101 -20.38119 -19.85660 -19.55388 -18.05797 -17.45997 -16.43851 -16.26045 -15.55966 -15.19218 -14.87879 -14.59731 -14.47670 -14.26110 -14.03626 -13.80063 -13.47940 -12.85569 -12.65792 -12.34231 -12.31135 -12.06330 -11.88098 -11.72562 -11.68056 -11.61346 -11.16880 -11.14655 -11.02267 -10.61258 -10.54499 -10.38750 -10.35992 -10.29756 -10.15665 -9.88891 -9.61055 -8.50750 -8.07646 -6.49508 -3.91498 2.38648 2.79609 3.12071 3.24090 3.31804 3.74894 4.12013 4.38323 4.44449 4.50630 4.73950 4.83219 4.94736 5.02388 5.15358 5.16682 5.18671 5.26954 5.31722 5.36012 5.41274 5.52718 5.56596 5.58783 5.63148 5.71555 5.73329 5.84542 5.88793 5.99470 6.01583 6.05028 6.08497 6.13671 6.28576 6.34729 6.74576 7.48487 7.89833 8.00634 8.49515 9.07882 9.40337 9.90357 10.67887 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.044015 B = 0.002730 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.998879 B =10253.074613 C =10664.642791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.124 4.124 8 C -0.069 4.069 9 H 0.080 0.920 10 C -0.113 4.113 11 C 0.457 3.543 12 O -0.513 6.513 13 O -0.328 6.328 14 C 0.060 3.940 15 C 0.439 3.561 16 O -0.576 6.576 17 N -0.554 5.554 18 C -0.301 4.301 19 H 0.106 0.894 20 C 0.024 3.976 21 N -0.898 5.898 22 Si 0.933 3.067 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.395 0.605 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.209 0.966 22.304 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.161 4.161 8 C -0.087 4.087 9 H 0.099 0.901 10 C -0.151 4.151 11 C 0.300 3.700 12 O -0.402 6.402 13 O -0.243 6.243 14 C -0.017 4.017 15 C 0.223 3.777 16 O -0.460 6.460 17 N -0.191 5.191 18 C -0.430 4.430 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.760 3.240 23 H -0.191 1.191 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.228 0.772 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.028 1.249 22.157 22.216 hybrid contribution 0.179 -0.389 -0.960 1.051 sum 1.207 0.860 21.197 21.249 Atomic orbital electron populations 1.21954 0.95191 1.02093 1.01942 1.21155 0.95479 0.99668 0.94189 0.90935 1.21567 0.95552 1.00718 0.97137 1.21559 0.95660 1.00718 0.97881 1.21490 1.00043 0.99544 0.94332 1.21753 0.94493 1.00747 0.99148 1.21034 0.96151 0.99901 0.91661 0.90130 1.21566 1.04213 1.00218 0.89089 1.23816 0.76454 0.84394 0.85328 1.90613 1.37598 1.24692 1.87287 1.86561 1.71524 1.51811 1.14361 1.22715 1.00643 0.94361 0.83988 1.19358 0.86632 0.87701 0.83971 1.90560 1.44239 1.24639 1.86582 1.41720 1.49299 1.23995 1.04110 1.19775 1.32916 1.08054 0.82302 0.87577 1.25315 0.96781 0.96059 0.99668 1.69619 1.39092 1.17965 1.27159 0.85744 0.78419 0.79216 0.80641 1.19088 1.20625 1.20619 0.92545 0.92646 0.92072 0.92069 0.91935 0.92310 0.92110 0.91984 0.92211 0.90015 0.92374 0.87372 0.87698 0.89655 0.89647 0.77171 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.85 37.16 0.33 -0.81 16 2 C -0.09 -0.68 2.25 -90.62 -0.20 -0.89 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 7 C -0.12 -1.29 4.94 -26.73 -0.13 -1.42 16 8 C -0.07 -0.68 1.37 -90.62 -0.12 -0.81 16 9 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 10 C -0.11 -1.25 5.07 -27.88 -0.14 -1.39 16 11 C 0.46 7.04 7.68 36.01 0.28 7.32 16 12 O -0.51 -8.64 13.72 -18.75 -0.26 -8.90 16 13 O -0.33 -6.16 9.75 -45.89 -0.45 -6.60 16 14 C 0.06 1.17 5.94 36.01 0.21 1.39 16 15 C 0.44 10.71 7.86 -10.98 -0.09 10.62 16 16 O -0.58 -16.20 16.08 -14.12 -0.23 -16.42 16 17 N -0.55 -14.14 5.29 -10.96 -0.06 -14.20 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 22 Si 0.93 20.79 29.55 -169.99 -5.02 15.76 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.11 1.06 6.17 -51.93 -0.32 0.74 16 38 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 40 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 41 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 42 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 340.55 15.07 5.13 5.13 Total: -1.00 -31.63 340.55 -7.42 -39.05 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.70 Total: 6.87 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.56 Total: 2.81 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.67 Total: -37.70 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -0.93 Total: -31.92 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.63 -7.42 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731245573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.002 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds