Wall clock time and date at job start Tue Mar 31 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.52996 * 109.47224 * 300.00294 * 4 2 1 6 6 C 1.53002 * 109.46969 * 299.99553 * 5 4 2 7 7 C 1.52997 * 109.47092 * 60.00060 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99774 * 7 6 5 9 9 C 1.53002 * 109.47415 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47132 * 295.00353 * 9 7 6 11 11 O 1.20829 * 119.99922 * 359.97438 * 10 9 7 12 12 O 1.34227 * 119.99992 * 180.02562 * 10 9 7 13 13 C 1.45200 * 116.99861 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46552 * 179.97438 * 13 12 10 15 15 O 1.21287 * 120.00678 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99481 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99766 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99953 * 359.97438 * 17 16 14 19 19 C 1.38954 * 119.99827 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00133 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99841 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47004 * 59.99930 * 21 19 17 23 23 H 1.48500 * 109.46885 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47001 * 299.99692 * 21 19 17 25 25 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09001 * 109.47066 * 60.00169 * 4 2 1 30 30 H 1.08996 * 109.47747 * 179.97438 * 4 2 1 31 31 H 1.09004 * 109.47552 * 59.99646 * 5 4 2 32 32 H 1.09004 * 109.47298 * 179.97438 * 5 4 2 33 33 H 1.09002 * 109.47067 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47312 * 299.99939 * 6 5 4 35 35 H 1.08995 * 109.46588 * 54.99941 * 9 7 6 36 36 H 1.08997 * 109.47298 * 174.99540 * 9 7 6 37 37 H 1.08994 * 109.47084 * 299.99497 * 13 12 10 38 38 H 1.08999 * 109.47182 * 60.00254 * 13 12 10 39 39 H 0.97001 * 120.00350 * 0.02562 * 16 14 13 40 40 H 0.96992 * 119.99940 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 25 2 1 42 42 H 1.09001 * 109.47362 * 300.00732 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.5300 -2.1637 -1.2492 6 6 2.0401 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 1 0.4400 -2.1637 1.2493 9 6 2.0395 -2.8853 2.4986 10 6 1.4382 -4.2657 2.5618 11 8 0.6796 -4.6343 1.6966 12 8 1.7445 -5.0852 3.5797 13 6 1.1279 -6.3998 3.5760 14 6 1.5865 -7.1730 4.7856 15 8 2.3567 -6.6659 5.5734 16 7 1.1399 -8.4277 4.9924 17 6 1.5566 -9.1310 6.0930 18 1 2.2431 -8.6797 6.7940 19 6 1.0966 -10.4247 6.3059 20 7 0.2617 -10.9740 5.4526 21 14 1.6649 -11.3832 7.8052 22 1 1.2700 -10.6546 9.0374 23 1 1.0349 -12.7279 7.8011 24 1 3.1423 -11.5293 7.7685 25 6 2.0400 -0.7212 1.2493 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.6768 -0.2074 -2.1391 30 1 3.1300 -0.7209 -1.2494 31 1 0.4400 -2.1638 -1.2492 32 1 1.8931 -2.6775 -2.1394 33 1 1.6764 -3.9125 0.0003 34 1 3.1301 -2.8850 0.0001 35 1 3.1257 -2.9638 2.4551 36 1 1.7512 -2.3223 3.3863 37 1 0.0436 -6.2926 3.6025 38 1 1.4182 -6.9348 2.6718 39 1 0.5236 -8.8332 4.3625 40 1 -0.0591 -11.8773 5.6011 41 1 3.1300 -0.7208 1.2495 42 1 1.6766 -0.2074 2.1393 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246268.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:49 Heat of formation + Delta-G solvation = -157.070164 kcal Electronic energy + Delta-G solvation = -22165.151977 eV Core-core repulsion = 18722.955031 eV Total energy + Delta-G solvation = -3442.196945 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56708 -39.21847 -38.06746 -36.09098 -33.98979 -33.39642 -31.69108 -31.37083 -28.91038 -27.27977 -26.92590 -24.56867 -22.48569 -22.18201 -20.29787 -19.55540 -18.88809 -18.05652 -17.38186 -16.43685 -16.30344 -15.77839 -15.45379 -14.92962 -14.62542 -14.39988 -14.18343 -14.00552 -13.78917 -13.31024 -12.89472 -12.80044 -12.44293 -12.28257 -11.99151 -11.94456 -11.67012 -11.61455 -11.57359 -11.21928 -11.10544 -11.04886 -10.60625 -10.48607 -10.39805 -10.33617 -10.27906 -10.19509 -9.86781 -9.58856 -8.50691 -8.07542 -6.49219 -3.91303 2.38446 2.79541 3.15960 3.23063 3.28044 3.75168 4.12121 4.40825 4.46870 4.48067 4.72112 4.86467 4.95439 5.04234 5.14492 5.15827 5.19021 5.27978 5.33250 5.39137 5.42843 5.48121 5.56616 5.59796 5.66469 5.71940 5.73769 5.78885 5.84374 6.01493 6.04627 6.05984 6.09427 6.14690 6.30511 6.37051 6.74416 7.48213 7.89526 8.00363 8.49726 9.07802 9.40336 9.90535 10.68030 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.050764 B = 0.002623 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.435201 B =10671.449851 C =10893.429012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.077 4.077 8 H 0.084 0.916 9 C -0.111 4.111 10 C 0.457 3.543 11 O -0.513 6.513 12 O -0.328 6.328 13 C 0.061 3.939 14 C 0.438 3.562 15 O -0.576 6.576 16 N -0.553 5.553 17 C -0.303 4.303 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.898 5.898 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.110 4.110 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.395 0.605 40 H 0.274 0.726 41 H 0.065 0.935 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.887 18.756 -12.521 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.095 4.095 8 H 0.102 0.898 9 C -0.148 4.148 10 C 0.300 3.700 11 O -0.402 6.402 12 O -0.243 6.243 13 C -0.017 4.017 14 C 0.223 3.777 15 O -0.461 6.461 16 N -0.191 5.191 17 C -0.432 4.432 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.761 3.239 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.198 1.198 25 C -0.147 4.147 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.228 0.772 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.087 18.751 -12.223 22.410 hybrid contribution -0.272 -0.948 0.241 1.015 sum 0.815 17.803 -11.982 21.476 Atomic orbital electron populations 1.21968 0.95332 1.02446 1.01321 1.21065 0.96002 0.98838 0.94927 0.91400 1.21583 1.00439 0.95970 0.97267 1.21531 1.01140 0.95150 0.97777 1.21745 1.00148 1.00652 0.93514 1.21053 1.01598 0.93947 0.92912 0.89821 1.21482 1.02716 0.89505 1.01135 1.23807 0.79149 0.88002 0.79022 1.90613 1.34464 1.76382 1.38726 1.86562 1.65701 1.25809 1.46184 1.22714 0.98124 0.80984 0.99867 1.19354 0.86827 0.83583 0.87937 1.90556 1.38383 1.69319 1.47798 1.41708 1.41815 1.11323 1.24215 1.19679 1.26221 0.95783 1.01516 0.87685 1.25313 0.96362 0.96992 0.99092 1.69605 1.31722 1.16124 1.36398 0.85856 0.78971 0.78181 0.80867 1.19747 1.20870 1.19755 1.21614 1.00754 0.94567 0.97769 0.91709 0.93010 0.92853 0.92330 0.92119 0.91643 0.92284 0.90094 0.92414 0.87708 0.87651 0.89645 0.89657 0.77164 0.91579 0.91668 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.50 37.16 0.32 -0.84 16 2 C -0.09 -0.66 3.19 -90.63 -0.29 -0.95 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.87 5.45 -26.74 -0.15 -1.01 16 5 C -0.12 -1.05 5.65 -26.73 -0.15 -1.21 16 6 C -0.12 -1.27 4.95 -26.73 -0.13 -1.40 16 7 C -0.08 -0.75 1.56 -90.62 -0.14 -0.89 16 8 H 0.08 0.91 6.24 -51.93 -0.32 0.58 16 9 C -0.11 -1.20 5.29 -27.88 -0.15 -1.35 16 10 C 0.46 7.01 7.67 36.01 0.28 7.29 16 11 O -0.51 -8.59 13.72 -18.75 -0.26 -8.85 16 12 O -0.33 -6.15 9.75 -45.89 -0.45 -6.59 16 13 C 0.06 1.17 5.94 36.01 0.21 1.39 16 14 C 0.44 10.70 7.86 -10.98 -0.09 10.62 16 15 O -0.58 -16.21 16.08 -14.11 -0.23 -16.44 16 16 N -0.55 -14.13 5.29 -10.96 -0.06 -14.19 16 17 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 18 H 0.11 3.04 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -24.23 13.05 55.50 0.72 -23.50 16 21 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 26 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.03 5.96 -51.93 -0.31 0.72 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 38 H 0.09 1.51 8.13 -51.93 -0.42 1.08 16 39 H 0.39 9.56 7.90 -40.82 -0.32 9.23 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -31.60 337.37 -7.40 -39.00 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.55 Total: 7.05 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.65 Total: 2.66 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.67 Total: -37.70 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.93 Total: -31.88 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.60 -7.40 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246268.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.069 kcal (2) G-P(sol) polarization free energy of solvation -31.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds