Wall clock time and date at job start Tue Mar 31 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47362 * 2 1 4 4 C 1.53006 * 109.46623 * 240.00551 * 2 1 3 5 5 C 1.52999 * 109.46626 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.46991 * 60.00378 * 5 4 2 7 7 C 1.52996 * 109.47131 * 299.99311 * 6 5 4 8 8 H 1.08996 * 109.47452 * 300.00000 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 7 6 5 10 10 C 1.50708 * 109.47329 * 65.00103 * 9 7 6 11 11 O 1.20825 * 119.99494 * 0.02562 * 10 9 7 12 12 O 1.34229 * 120.00179 * 179.97438 * 10 9 7 13 13 C 1.45193 * 116.99587 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.46850 * 180.02562 * 13 12 10 15 15 O 1.21289 * 120.00150 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99878 * 180.02562 * 14 13 12 17 17 C 1.37096 * 119.99801 * 179.97438 * 16 14 13 18 18 H 1.07996 * 120.00280 * 359.97438 * 17 16 14 19 19 C 1.38952 * 120.00133 * 179.97438 * 17 16 14 20 20 N 1.31416 * 119.99939 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00320 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46684 * 90.00093 * 21 19 17 23 23 H 1.48491 * 109.47011 * 209.99903 * 21 19 17 24 24 H 1.48496 * 109.46674 * 330.00385 * 21 19 17 25 25 C 1.52997 * 109.47317 * 120.00732 * 2 1 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46716 * 299.99359 * 1 2 3 28 28 H 1.09000 * 109.47486 * 59.99277 * 1 2 3 29 29 H 1.08993 * 109.46955 * 300.00075 * 4 2 1 30 30 H 1.09000 * 109.47050 * 59.99904 * 4 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 5 4 2 32 32 H 1.08993 * 109.47839 * 299.99931 * 5 4 2 33 33 H 1.09001 * 109.47289 * 179.97438 * 6 5 4 34 34 H 1.09000 * 109.47611 * 59.99933 * 6 5 4 35 35 H 1.09000 * 109.47325 * 185.00280 * 9 7 6 36 36 H 1.09006 * 109.47500 * 305.00368 * 9 7 6 37 37 H 1.09004 * 109.47476 * 299.99655 * 13 12 10 38 38 H 1.08999 * 109.47706 * 60.00252 * 13 12 10 39 39 H 0.96997 * 120.00154 * 359.97438 * 16 14 13 40 40 H 0.96997 * 120.00179 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.47153 * 299.99641 * 25 2 1 42 42 H 1.08996 * 109.46952 * 59.99813 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5699 -0.7206 -1.2497 6 6 4.0804 -1.4417 -0.0006 7 6 3.5705 -0.7206 1.2487 8 1 3.9335 0.3072 1.2486 9 6 4.0805 -1.4420 2.4978 10 6 5.5824 -1.3358 2.5613 11 8 6.1832 -0.7435 1.6964 12 8 6.2526 -1.8985 3.5792 13 6 7.6975 -1.7559 3.5758 14 6 8.2733 -2.4466 4.7852 15 8 7.5381 -3.0037 5.5727 16 7 9.6051 -2.4443 4.9922 17 6 10.1288 -3.0722 6.0926 18 1 9.4742 -3.5683 6.7939 19 6 11.5018 -3.0703 6.3058 20 7 12.2985 -2.4671 5.4523 21 14 12.2154 -3.9252 7.8057 22 1 12.5197 -5.3397 7.4711 23 1 13.4629 -3.2356 8.2217 24 1 11.2307 -3.8801 8.9163 25 6 2.0400 -0.7214 1.2491 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6765 -1.7488 -1.2495 30 1 1.6765 -0.2072 -2.1393 31 1 3.9331 -1.2340 -2.1400 32 1 3.9329 0.3071 -1.2499 33 1 5.1704 -1.4417 -0.0010 34 1 3.7174 -2.4695 -0.0005 35 1 3.6459 -0.9826 3.3856 36 1 3.7921 -2.4923 2.4541 37 1 8.1052 -2.2078 2.6714 38 1 7.9584 -0.6979 3.6026 39 1 10.1930 -1.9984 4.3626 40 1 13.2569 -2.4655 5.6013 41 1 1.6768 -0.2076 2.1392 42 1 1.6767 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246269.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:52 Heat of formation + Delta-G solvation = -161.509201 kcal Electronic energy + Delta-G solvation = -21970.542946 eV Core-core repulsion = 18528.153510 eV Total energy + Delta-G solvation = -3442.389436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51660 -39.00706 -38.05023 -36.09522 -33.99133 -33.63183 -32.03182 -31.37115 -28.93800 -27.32812 -26.52897 -24.57122 -22.38041 -21.72090 -20.10740 -19.93993 -19.55224 -18.05742 -17.44728 -16.44882 -16.22349 -15.58158 -15.40761 -14.80785 -14.64806 -14.42492 -14.17144 -14.03978 -13.76002 -13.53003 -12.81300 -12.64506 -12.60621 -12.27082 -12.06773 -11.94465 -11.77362 -11.61293 -11.48855 -11.17481 -11.12832 -11.00433 -10.65826 -10.59957 -10.43909 -10.35654 -10.29443 -10.19524 -9.92660 -9.59935 -8.50803 -8.07620 -6.49379 -3.91398 2.38277 2.79147 3.13685 3.23703 3.30096 3.74977 4.11962 4.37854 4.44901 4.48312 4.72468 4.82128 4.93574 5.02790 5.13257 5.15709 5.22993 5.26953 5.29425 5.37878 5.44474 5.45701 5.57436 5.58179 5.62112 5.63495 5.72151 5.77423 5.84164 5.99981 6.03286 6.05029 6.08785 6.12900 6.27874 6.33443 6.74173 7.48325 7.89513 8.00300 8.49569 9.07811 9.40287 9.90405 10.67899 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.053462 B = 0.002541 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.607857 B =11015.288902 C =11359.292011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.115 4.115 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.075 4.075 8 H 0.080 0.920 9 C -0.110 4.110 10 C 0.457 3.543 11 O -0.512 6.512 12 O -0.328 6.328 13 C 0.061 3.939 14 C 0.438 3.562 15 O -0.576 6.576 16 N -0.554 5.554 17 C -0.302 4.302 18 H 0.106 0.894 19 C 0.024 3.976 20 N -0.898 5.898 21 Si 0.934 3.066 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.268 1.268 25 C -0.109 4.109 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.395 0.605 40 H 0.274 0.726 41 H 0.064 0.936 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.617 5.002 -12.512 22.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.093 4.093 8 H 0.098 0.902 9 C -0.148 4.148 10 C 0.300 3.700 11 O -0.402 6.402 12 O -0.243 6.243 13 C -0.017 4.017 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.191 5.191 17 C -0.431 4.431 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.761 3.239 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.146 4.146 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.228 0.772 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.688 4.812 -12.209 22.836 hybrid contribution 1.017 -0.048 0.228 1.043 sum -17.671 4.765 -11.981 21.875 Atomic orbital electron populations 1.21833 0.95339 1.01754 1.01542 1.21118 0.95207 0.99744 0.94958 0.91210 1.21618 0.95842 1.00517 0.97226 1.21491 0.95151 1.00965 0.97841 1.21750 1.02323 0.98532 0.93498 1.21014 0.94979 1.00376 0.92962 0.90161 1.21477 0.87725 1.04498 1.01085 1.23806 0.91795 0.75366 0.79023 1.90614 1.70589 1.40230 1.38741 1.86561 1.21601 1.69901 1.46190 1.22715 0.77153 1.01958 0.99869 1.19356 0.83613 0.86789 0.87931 1.90558 1.58874 1.48806 1.47807 1.41713 1.04385 1.48745 1.24251 1.19724 0.91062 1.30851 1.01481 0.87632 1.25319 0.95909 0.97471 0.99119 1.69616 1.04895 1.42908 1.36402 0.85793 0.78314 0.78965 0.80853 1.20262 1.20817 1.19281 1.21654 0.94219 1.01040 0.97725 0.92725 0.92720 0.92842 0.92069 0.92329 0.92164 0.91982 0.90073 0.92376 0.87625 0.87678 0.89651 0.89638 0.77165 0.91640 0.91709 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.09 -0.68 2.72 -90.62 -0.25 -0.92 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -0.87 5.20 -26.73 -0.14 -1.01 16 5 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 6 C -0.12 -1.28 4.94 -26.73 -0.13 -1.41 16 7 C -0.07 -0.73 1.84 -90.60 -0.17 -0.90 16 8 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 9 C -0.11 -1.20 5.28 -27.88 -0.15 -1.34 16 10 C 0.46 7.02 7.68 36.01 0.28 7.29 16 11 O -0.51 -8.62 13.72 -18.75 -0.26 -8.87 16 12 O -0.33 -6.15 9.75 -45.90 -0.45 -6.59 16 13 C 0.06 1.17 5.94 36.01 0.21 1.39 16 14 C 0.44 10.71 7.86 -10.98 -0.09 10.62 16 15 O -0.58 -16.21 16.08 -14.11 -0.23 -16.44 16 16 N -0.55 -14.14 5.29 -10.96 -0.06 -14.20 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 18 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 20 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 21 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 C -0.11 -0.85 4.49 -26.71 -0.12 -0.97 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.04 5.96 -51.93 -0.31 0.73 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.51 8.13 -51.93 -0.42 1.08 16 38 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 39 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -31.64 344.41 -7.60 -39.24 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.90 Total: 6.43 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -0.60 Total: 2.96 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.67 Total: -37.69 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.93 Total: -31.91 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.64 -7.60 -39.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246269.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.264 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds