Wall clock time and date at job start Tue Mar 31 2020 06:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47634 * 2 1 4 4 C 1.53003 * 109.47291 * 120.00483 * 2 1 3 5 5 C 1.52991 * 109.47079 * 59.99564 * 4 2 1 6 6 C 1.52995 * 109.47487 * 60.00502 * 5 4 2 7 7 C 1.53006 * 109.47046 * 299.99655 * 6 5 4 8 8 H 1.09002 * 109.47040 * 300.00619 * 7 6 5 9 9 C 1.52990 * 109.47526 * 179.97438 * 7 6 5 10 10 C 1.50706 * 109.47273 * 64.99876 * 9 7 6 11 11 O 1.20823 * 119.99423 * 0.02562 * 10 9 7 12 12 O 1.34226 * 120.00417 * 180.02562 * 10 9 7 13 13 C 1.45198 * 117.00235 * 180.02562 * 12 10 9 14 14 C 1.50694 * 109.47115 * 179.97438 * 13 12 10 15 15 O 1.21297 * 120.00199 * 359.97438 * 14 13 12 16 16 N 1.34784 * 119.99988 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99735 * 179.72439 * 16 14 13 18 18 H 1.07998 * 120.00618 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99464 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00058 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99669 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47319 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46816 * 120.00520 * 21 19 17 24 24 H 1.48501 * 109.47099 * 240.00173 * 21 19 17 25 25 C 1.53001 * 109.46646 * 59.99837 * 7 6 5 26 26 H 1.08996 * 109.47634 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46699 * 299.99887 * 1 2 3 28 28 H 1.08999 * 109.47207 * 59.99686 * 1 2 3 29 29 H 1.09000 * 109.47342 * 179.97438 * 4 2 1 30 30 H 1.09003 * 109.46947 * 299.99478 * 4 2 1 31 31 H 1.09004 * 109.46958 * 180.02562 * 5 4 2 32 32 H 1.09006 * 109.47245 * 299.99868 * 5 4 2 33 33 H 1.09004 * 109.47756 * 180.02562 * 6 5 4 34 34 H 1.08998 * 109.47534 * 59.99138 * 6 5 4 35 35 H 1.09002 * 109.47247 * 305.00162 * 9 7 6 36 36 H 1.08996 * 109.47716 * 185.00174 * 9 7 6 37 37 H 1.08998 * 109.46913 * 59.99865 * 13 12 10 38 38 H 1.09002 * 109.46903 * 299.99636 * 13 12 10 39 39 H 0.97000 * 119.99339 * 0.02562 * 16 14 13 40 40 H 0.97000 * 119.99610 * 179.97438 * 20 19 17 41 41 H 1.08993 * 109.47476 * 60.00347 * 25 7 6 42 42 H 1.09007 * 109.46824 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5299 -2.1638 1.2491 6 6 2.0399 -2.8850 -0.0001 7 6 1.5298 -2.1638 -1.2493 8 1 0.4398 -2.1637 -1.2492 9 6 2.0402 -2.8846 -2.4986 10 6 1.4398 -4.2654 -2.5624 11 8 0.6811 -4.6347 -1.6976 12 8 1.7479 -5.0849 -3.5799 13 6 1.1321 -6.3998 -3.5769 14 6 1.5915 -7.1724 -4.7864 15 8 2.3618 -6.6646 -5.5738 16 7 1.1466 -8.4277 -4.9932 17 6 1.5602 -9.1285 -6.0966 18 1 2.2428 -8.6749 -6.7999 19 6 1.1018 -10.4228 -6.3095 20 7 0.2715 -10.9750 -5.4536 21 14 1.6659 -11.3780 -7.8126 22 1 2.5922 -10.5382 -8.6138 23 1 2.3662 -12.6138 -7.3795 24 1 0.4871 -11.7410 -8.6395 25 6 2.0399 -0.7213 -1.2493 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.1300 -0.7218 1.2490 30 1 1.6767 -0.2075 2.1392 31 1 1.8930 -2.6775 2.1393 32 1 0.4399 -2.1637 1.2492 33 1 1.6761 -3.9126 -0.0004 34 1 3.1299 -2.8850 -0.0002 35 1 3.1266 -2.9625 -2.4548 36 1 1.7519 -2.3217 -3.3863 37 1 0.0477 -6.2932 -3.6046 38 1 1.4217 -6.9345 -2.6722 39 1 0.5303 -8.8336 -4.3637 40 1 -0.0487 -11.8784 -5.6025 41 1 3.1299 -0.7213 -1.2493 42 1 1.6762 -0.2073 -2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246270.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:55 Heat of formation + Delta-G solvation = -157.165041 kcal Electronic energy + Delta-G solvation = -22165.439911 eV Core-core repulsion = 18723.238852 eV Total energy + Delta-G solvation = -3442.201059 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56866 -39.21978 -38.06919 -36.09259 -33.99207 -33.39743 -31.69242 -31.37200 -28.91142 -27.28015 -26.92638 -24.57202 -22.48572 -22.18278 -20.29879 -19.55810 -18.88866 -18.05797 -17.38267 -16.43855 -16.30499 -15.77907 -15.45575 -14.93151 -14.63063 -14.39941 -14.18317 -13.99932 -13.78906 -13.31228 -12.89538 -12.80574 -12.44377 -12.28311 -11.99341 -11.94582 -11.67214 -11.61949 -11.57504 -11.21991 -11.14618 -11.04939 -10.60740 -10.40016 -10.38779 -10.34159 -10.28777 -10.19512 -9.86846 -9.61140 -8.50854 -8.07758 -6.49642 -3.91529 2.38407 2.79473 3.12025 3.24047 3.31765 3.74795 4.12010 4.40828 4.46825 4.48001 4.72006 4.86402 4.95389 5.04165 5.14429 5.15637 5.18968 5.27930 5.33190 5.39116 5.42803 5.48061 5.56539 5.59670 5.66425 5.71774 5.73697 5.78818 5.84328 6.01438 6.04549 6.05948 6.09307 6.14623 6.30450 6.36993 6.74334 7.48406 7.89628 8.00412 8.49461 9.07820 9.40234 9.90299 10.67755 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.050777 B = 0.002623 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.294614 B =10671.594819 C =10893.973773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.077 4.077 8 H 0.084 0.916 9 C -0.111 4.111 10 C 0.457 3.543 11 O -0.513 6.513 12 O -0.328 6.328 13 C 0.061 3.939 14 C 0.438 3.562 15 O -0.576 6.576 16 N -0.554 5.554 17 C -0.301 4.301 18 H 0.106 0.894 19 C 0.024 3.976 20 N -0.898 5.898 21 Si 0.933 3.067 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.110 4.110 26 H 0.064 0.936 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.395 0.605 40 H 0.273 0.727 41 H 0.065 0.935 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 18.805 12.519 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.156 4.156 6 C -0.161 4.161 7 C -0.095 4.095 8 H 0.102 0.898 9 C -0.148 4.148 10 C 0.300 3.700 11 O -0.402 6.402 12 O -0.243 6.243 13 C -0.017 4.017 14 C 0.223 3.777 15 O -0.460 6.460 16 N -0.191 5.191 17 C -0.431 4.431 18 H 0.124 0.876 19 C -0.178 4.178 20 N -0.538 5.538 21 Si 0.760 3.240 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.147 4.147 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.228 0.772 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.095 18.809 12.219 22.456 hybrid contribution -0.293 -0.963 -0.232 1.033 sum 0.803 17.845 11.987 21.512 Atomic orbital electron populations 1.21966 0.95334 1.02445 1.01321 1.21067 0.96001 0.98839 0.94928 0.91398 1.21586 1.00438 0.95968 0.97268 1.21530 1.01140 0.95154 0.97777 1.21746 1.00148 1.00651 0.93513 1.21053 1.01594 0.93951 0.92912 0.89816 1.21484 1.02721 0.89497 1.01133 1.23808 0.79144 0.88015 0.79014 1.90611 1.34461 1.76377 1.38732 1.86561 1.65674 1.25787 1.46239 1.22713 0.98137 0.80980 0.99864 1.19359 0.86831 0.83559 0.87925 1.90561 1.38344 1.69286 1.47834 1.41723 1.41929 1.11324 1.24147 1.19776 1.26345 0.95742 1.01190 0.87578 1.25317 0.96400 0.96994 0.99115 1.69622 1.31999 1.15935 1.36266 0.85743 0.78537 0.79161 0.80576 1.19086 1.20618 1.20625 1.21616 1.00753 0.94569 0.97771 0.91710 0.93016 0.92847 0.92117 0.92324 0.92284 0.91645 0.90093 0.92414 0.87706 0.87652 0.89647 0.89648 0.77172 0.91690 0.91665 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.50 37.15 0.32 -0.84 16 2 C -0.09 -0.66 3.20 -90.62 -0.29 -0.95 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.12 -0.87 5.45 -26.73 -0.15 -1.01 16 5 C -0.12 -1.05 5.65 -26.74 -0.15 -1.21 16 6 C -0.12 -1.27 4.95 -26.73 -0.13 -1.40 16 7 C -0.08 -0.75 1.56 -90.62 -0.14 -0.89 16 8 H 0.08 0.91 6.24 -51.93 -0.32 0.58 16 9 C -0.11 -1.20 5.28 -27.89 -0.15 -1.35 16 10 C 0.46 7.01 7.68 36.01 0.28 7.28 16 11 O -0.51 -8.58 13.72 -18.75 -0.26 -8.84 16 12 O -0.33 -6.14 9.75 -45.89 -0.45 -6.59 16 13 C 0.06 1.17 5.94 36.00 0.21 1.39 16 14 C 0.44 10.70 7.86 -10.98 -0.09 10.61 16 15 O -0.58 -16.20 16.08 -14.12 -0.23 -16.43 16 16 N -0.55 -14.14 5.29 -10.96 -0.06 -14.20 16 17 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 18 H 0.11 3.08 7.16 -52.49 -0.38 2.71 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 21 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 25 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 26 H 0.06 0.55 4.81 -51.93 -0.25 0.30 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 33 H 0.08 1.03 5.96 -51.93 -0.31 0.72 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 38 H 0.09 1.51 8.13 -51.93 -0.42 1.08 16 39 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 337.37 15.07 5.08 5.08 Total: -1.00 -31.64 337.37 -7.40 -39.04 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -6.55 Total: 6.97 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -0.65 Total: 2.68 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.67 Total: -37.69 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.93 Total: -31.86 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.64 -7.40 -39.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246270.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.121 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds