Wall clock time and date at job start Tue Mar 31 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50696 * 109.47685 * 239.99689 * 2 1 3 5 5 H 1.07997 * 120.00508 * 240.00345 * 4 2 1 6 6 C 1.37882 * 119.99763 * 59.99353 * 4 2 1 7 7 N 1.31514 * 119.99972 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 119.99968 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.47110 * 60.00648 * 8 6 4 10 10 H 1.48496 * 109.47287 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47393 * 300.00543 * 8 6 4 12 12 O 1.45204 * 109.47157 * 119.99176 * 2 1 3 13 13 C 1.34224 * 117.00569 * 270.00514 * 12 2 1 14 14 O 1.20831 * 119.99610 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00222 * 179.97438 * 13 12 2 16 16 H 1.08998 * 109.46795 * 299.99997 * 15 13 12 17 17 C 1.52998 * 109.46870 * 60.00028 * 15 13 12 18 18 N 1.46499 * 109.46866 * 180.02562 * 15 13 12 19 19 C 1.34775 * 119.99299 * 155.00222 * 18 15 13 20 20 O 1.21276 * 120.00699 * 359.97438 * 19 18 15 21 21 C 1.50709 * 119.99599 * 179.97438 * 19 18 15 22 22 C 1.55238 * 110.58096 * 294.87565 * 21 19 18 23 23 C 1.54894 * 102.58338 * 203.33573 * 22 21 19 24 24 C 1.54266 * 104.31305 * 37.93170 * 23 22 21 25 25 C 1.53869 * 106.60031 * 336.32486 * 24 23 22 26 26 H 1.09002 * 109.47472 * 300.00101 * 1 2 3 27 27 H 1.09000 * 109.47260 * 60.00919 * 1 2 3 28 28 H 1.09006 * 109.46880 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99981 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.47437 * 60.00362 * 17 15 13 31 31 H 1.09002 * 109.46957 * 180.02562 * 17 15 13 32 32 H 1.09000 * 109.47138 * 299.99964 * 17 15 13 33 33 H 0.96998 * 120.00025 * 334.99839 * 18 15 13 34 34 H 1.09006 * 110.43428 * 57.45967 * 21 19 18 35 35 H 1.08996 * 110.89448 * 85.05138 * 22 21 19 36 36 H 1.08993 * 110.76342 * 321.56803 * 22 21 19 37 37 H 1.09002 * 110.48891 * 279.18596 * 23 22 21 38 38 H 1.08998 * 110.48494 * 156.67683 * 23 22 21 39 39 H 1.09001 * 110.03084 * 95.60669 * 24 23 22 40 40 H 1.08996 * 110.03108 * 216.98559 * 24 23 22 41 41 H 1.08999 * 110.04012 * 119.28327 * 25 24 23 42 42 H 1.09006 * 110.02998 * 240.67078 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.8259 -2.5204 -4.0075 10 1 1.8270 -0.4202 -5.2203 11 1 3.8064 -1.1210 -4.0080 12 8 2.0140 -0.6843 1.1857 13 6 2.2171 0.0642 2.2812 14 8 1.9972 1.2519 2.2506 15 6 2.7182 -0.5770 3.5496 16 1 2.0087 -1.3367 3.8776 17 6 4.0782 -1.2277 3.2893 18 7 2.8561 0.4439 4.5913 19 6 2.7923 0.0932 5.8910 20 8 2.6203 -1.0673 6.1983 21 6 2.9347 1.1432 6.9627 22 6 4.3577 1.7631 6.9337 23 6 4.5192 2.3047 8.3758 24 6 3.8353 1.2425 9.2610 25 6 2.8279 0.5040 8.3626 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 0.7094 1.1615 -3.4844 30 1 4.7877 -0.4680 2.9614 31 1 4.4404 -1.6918 4.2066 32 1 3.9751 -1.9873 2.5144 33 1 2.9933 1.3721 4.3455 34 1 2.1786 1.9186 6.8386 35 1 4.4136 2.5743 6.2078 36 1 5.1070 1.0006 6.7211 37 1 4.0191 3.2676 8.4800 38 1 5.5745 2.3942 8.6336 39 1 4.5773 0.5419 9.6443 40 1 3.3152 1.7248 10.0886 41 1 3.0808 -0.5550 8.3097 42 1 1.8180 0.6273 8.7540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:34 Heat of formation + Delta-G solvation = -149.880260 kcal Electronic energy + Delta-G solvation = -22564.352235 eV Core-core repulsion = 19122.467068 eV Total energy + Delta-G solvation = -3441.885168 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.48274 -39.50319 -37.39508 -36.06182 -34.83233 -33.34075 -31.30014 -29.60683 -28.99039 -28.78471 -25.39956 -24.78864 -22.60487 -21.27572 -20.62417 -19.97347 -19.56195 -17.91011 -16.95655 -16.49796 -16.27853 -15.74320 -15.39476 -15.14386 -14.85576 -14.68077 -14.01310 -13.62535 -13.48204 -13.23017 -12.84117 -12.36418 -12.11818 -11.99360 -11.98452 -11.55639 -11.45613 -11.38390 -11.35511 -11.27557 -11.08889 -11.02503 -10.89911 -10.65350 -10.45470 -10.32706 -9.85064 -9.76256 -9.63192 -9.17343 -8.98325 -8.54008 -6.23157 -4.30540 2.54848 2.78709 2.88202 3.23792 3.27576 3.30336 3.67588 4.23618 4.28882 4.31786 4.51035 4.91320 5.09818 5.11332 5.16207 5.18111 5.22267 5.27421 5.32297 5.39742 5.42845 5.58686 5.67841 5.78038 5.83092 5.88538 5.92111 6.04881 6.13293 6.23564 6.38006 6.56551 6.82905 6.83765 7.06117 7.45828 7.52633 7.65433 7.84370 8.06854 8.15144 8.49927 8.79729 9.34986 10.84215 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039778 B = 0.003092 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.741896 B = 9052.005729 C = 9138.357804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.523 4.523 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.913 3.087 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.348 6.348 13 C 0.452 3.548 14 O -0.520 6.520 15 C 0.148 3.852 16 H 0.120 0.880 17 C -0.155 4.155 18 N -0.713 5.713 19 C 0.525 3.475 20 O -0.541 6.541 21 C -0.114 4.114 22 C -0.115 4.115 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.112 4.112 26 H 0.015 0.985 27 H 0.100 0.900 28 H 0.038 0.962 29 H 0.267 0.733 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.410 0.590 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 1.855 18.860 19.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.263 6.263 13 C 0.294 3.706 14 O -0.410 6.410 15 C 0.042 3.958 16 H 0.138 0.862 17 C -0.213 4.213 18 N -0.367 5.367 19 C 0.311 3.689 20 O -0.418 6.418 21 C -0.135 4.135 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.150 4.150 26 H 0.035 0.965 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.247 0.753 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.732 1.479 18.840 19.748 hybrid contribution 0.120 0.263 -1.102 1.140 sum 5.852 1.742 17.738 18.759 Atomic orbital electron populations 1.22178 0.97453 1.00265 1.01459 1.20698 0.91460 0.93922 0.77520 0.93485 1.20980 1.32711 1.13594 0.88790 0.91235 1.24891 0.94874 0.95089 0.99096 1.69886 1.35929 1.22498 1.24374 0.86307 0.79216 0.79565 0.80905 1.19878 1.21015 1.19950 1.86485 1.75330 1.43432 1.21073 1.23248 0.74968 0.86028 0.86399 1.90590 1.48998 1.16866 1.84550 1.20366 1.00110 0.90880 0.84485 0.86229 1.22064 0.94486 1.01490 1.03246 1.45869 1.73780 1.12055 1.04975 1.20539 0.75425 0.89963 0.82934 1.90679 1.48990 1.20006 1.82139 1.22237 0.99888 0.97133 0.94246 1.22564 0.94657 1.00272 0.97773 1.22351 1.00774 0.98635 0.94341 1.22148 0.98249 0.97747 0.98079 1.22074 0.99665 1.01320 0.91946 0.96544 0.88121 0.94291 0.92280 0.91909 0.91128 0.89663 0.75333 0.87973 0.90592 0.90817 0.91334 0.91392 0.91702 0.91752 0.89693 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.33 37.16 0.35 -3.57 16 2 C 0.22 5.70 2.56 -27.89 -0.07 5.63 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.43 8.90 -34.44 -0.31 -14.74 16 5 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.91 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 12 O -0.35 -8.05 9.77 -39.24 -0.38 -8.44 16 13 C 0.45 9.08 7.30 36.01 0.26 9.34 16 14 O -0.52 -11.47 15.06 -18.75 -0.28 -11.75 16 15 C 0.15 2.32 3.09 -69.08 -0.21 2.11 16 16 H 0.12 1.90 7.58 -51.93 -0.39 1.51 16 17 C -0.15 -2.13 9.42 37.16 0.35 -1.79 16 18 N -0.71 -9.72 4.94 -54.93 -0.27 -9.99 16 19 C 0.52 6.92 7.10 -10.98 -0.08 6.84 16 20 O -0.54 -8.77 15.09 5.56 0.08 -8.68 16 21 C -0.11 -1.11 3.25 -89.92 -0.29 -1.40 16 22 C -0.11 -0.93 6.34 -24.55 -0.16 -1.09 16 23 C -0.12 -0.85 6.82 -25.07 -0.17 -1.02 16 24 C -0.12 -0.92 6.80 -25.62 -0.17 -1.09 16 25 C -0.11 -1.05 6.18 -25.62 -0.16 -1.21 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 33 H 0.41 5.25 7.79 -40.82 -0.32 4.93 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.64 8.06 -51.93 -0.42 0.23 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.95 6.85 -51.93 -0.36 0.60 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 346.72 15.07 5.22 5.22 Total: -1.00 -30.68 346.72 -7.57 -38.25 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.79 Total: 4.29 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.76 Total: -0.38 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.36 Total: -34.30 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.58 Total: -28.87 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.68 -7.57 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.635 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds