Wall clock time and date at job start Tue Mar 31 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46927 * 2 1 4 4 C 1.50700 * 109.46842 * 239.99714 * 2 1 3 5 5 H 1.08002 * 119.99922 * 239.99659 * 4 2 1 6 6 C 1.37879 * 119.99937 * 60.00238 * 4 2 1 7 7 N 1.31512 * 120.00229 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99638 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47420 * 60.00032 * 8 6 4 10 10 H 1.48506 * 109.47031 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47153 * 299.99636 * 8 6 4 12 12 O 1.45202 * 109.47054 * 119.99731 * 2 1 3 13 13 C 1.34231 * 116.99516 * 269.99753 * 12 2 1 14 14 O 1.20820 * 120.00512 * 0.02562 * 13 12 2 15 15 C 1.50710 * 119.99477 * 179.97438 * 13 12 2 16 16 H 1.09000 * 109.46545 * 60.00404 * 15 13 12 17 17 C 1.53001 * 109.47267 * 300.00352 * 15 13 12 18 18 N 1.46494 * 109.46805 * 180.02562 * 15 13 12 19 19 C 1.34784 * 119.99635 * 205.00189 * 18 15 13 20 20 O 1.21279 * 119.99925 * 359.97438 * 19 18 15 21 21 C 1.50700 * 119.99961 * 180.02562 * 19 18 15 22 22 C 1.54274 * 110.03139 * 297.90611 * 21 19 18 23 23 C 1.54960 * 104.15934 * 217.13316 * 22 21 19 24 24 C 1.54890 * 102.77769 * 37.89262 * 23 22 21 25 25 C 1.53870 * 110.03530 * 180.69114 * 21 19 18 26 26 H 1.08993 * 109.47226 * 60.00201 * 1 2 3 27 27 H 1.08995 * 109.47219 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46974 * 300.00592 * 1 2 3 29 29 H 0.96996 * 120.00123 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46920 * 300.00159 * 17 15 13 31 31 H 1.08996 * 109.46997 * 59.99748 * 17 15 13 32 32 H 1.08991 * 109.46933 * 180.02562 * 17 15 13 33 33 H 0.96995 * 120.00292 * 25.27621 * 18 15 13 34 34 H 1.08997 * 110.01573 * 59.29300 * 21 19 18 35 35 H 1.08999 * 110.48561 * 335.78565 * 22 21 19 36 36 H 1.09004 * 110.48438 * 98.42226 * 22 21 19 37 37 H 1.08994 * 110.72279 * 279.57290 * 23 22 21 38 38 H 1.09007 * 110.91921 * 156.29317 * 23 22 21 39 39 H 1.09000 * 110.48895 * 203.40575 * 24 23 22 40 40 H 1.08995 * 110.60291 * 80.81173 * 24 23 22 41 41 H 1.08993 * 110.03088 * 238.57172 * 25 21 19 42 42 H 1.09007 * 110.02608 * 359.97438 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6035 8 14 2.3224 -1.1197 -4.0078 9 1 1.8279 -2.5200 -4.0080 10 1 1.8268 -0.4202 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 8 2.0140 -0.6844 1.1856 13 6 2.2172 0.0642 2.2811 14 8 1.9974 1.2519 2.2505 15 6 2.7183 -0.5770 3.5496 16 1 3.6872 -1.0406 3.3640 17 6 1.7223 -1.6434 4.0099 18 7 2.8563 0.4438 4.5911 19 6 3.7229 0.2576 5.6066 20 8 4.3879 -0.7553 5.6581 21 6 3.8645 1.3074 6.6784 22 6 4.3689 2.6282 6.0611 23 6 5.3269 3.2063 7.1332 24 6 6.0321 1.9405 7.6806 25 6 4.9212 0.8705 7.7080 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8900 29 1 0.7081 1.1607 -3.4844 30 1 0.7535 -1.1797 4.1954 31 1 1.6192 -2.4029 3.2350 32 1 2.0846 -2.1067 4.9275 33 1 2.3212 1.2519 4.5522 34 1 2.9061 1.4682 7.1722 35 1 4.9072 2.4346 5.1333 36 1 3.5364 3.3095 5.8851 37 1 4.7657 3.7074 7.9219 38 1 6.0496 3.8869 6.6831 39 1 6.4131 2.1206 8.6858 40 1 6.8404 1.6344 7.0165 41 1 4.4759 0.8199 8.7015 42 1 5.3313 -0.1012 7.4325 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733709402.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:41 Heat of formation + Delta-G solvation = -149.045839 kcal Electronic energy + Delta-G solvation = -22654.502638 eV Core-core repulsion = 19212.653654 eV Total energy + Delta-G solvation = -3441.848984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.51851 -39.52235 -37.32849 -36.05806 -34.84168 -33.34015 -31.31219 -29.61028 -28.98074 -28.70915 -25.38180 -24.80996 -22.53065 -21.21222 -20.84351 -19.90878 -19.49511 -17.88764 -16.96472 -16.51527 -16.12257 -15.83484 -15.45126 -15.20464 -14.80826 -14.49760 -14.08808 -13.74609 -13.52364 -13.12929 -12.75042 -12.34832 -12.21362 -11.93715 -11.79781 -11.56060 -11.52481 -11.31699 -11.29199 -11.23069 -11.10114 -10.97439 -10.90264 -10.70973 -10.45553 -10.32605 -9.84038 -9.76484 -9.62295 -9.17413 -8.98761 -8.53867 -6.23020 -4.30347 2.55218 2.79295 2.87982 3.24455 3.27986 3.30982 3.67412 4.26215 4.29434 4.38196 4.54383 4.94737 5.09854 5.12841 5.14873 5.21441 5.24195 5.29088 5.40133 5.43171 5.45769 5.65574 5.72450 5.77465 5.83277 5.90867 5.95888 6.10248 6.15294 6.20339 6.38288 6.55727 6.81439 6.82791 7.05701 7.45638 7.52755 7.65094 7.84382 8.06872 8.15145 8.49982 8.80037 9.35291 10.84363 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028975 B = 0.003309 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.127466 B = 8459.793764 C = 8646.048773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.524 4.524 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.348 6.348 13 C 0.452 3.548 14 O -0.519 6.519 15 C 0.147 3.853 16 H 0.121 0.879 17 C -0.154 4.154 18 N -0.713 5.713 19 C 0.523 3.477 20 O -0.540 6.540 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.119 4.119 26 H 0.100 0.900 27 H 0.038 0.962 28 H 0.015 0.985 29 H 0.267 0.733 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.410 0.590 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 2.045 18.668 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.562 4.562 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.740 3.260 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.263 6.263 13 C 0.294 3.706 14 O -0.409 6.409 15 C 0.041 3.959 16 H 0.139 0.861 17 C -0.213 4.213 18 N -0.367 5.367 19 C 0.310 3.690 20 O -0.417 6.417 21 C -0.133 4.133 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.156 4.156 26 H 0.119 0.881 27 H 0.057 0.943 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.246 0.754 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.449 1.774 18.458 19.069 hybrid contribution -0.178 0.186 -0.999 1.032 sum 4.271 1.959 17.459 18.080 Atomic orbital electron populations 1.22167 0.97395 1.00225 1.01441 1.20699 0.91468 0.93927 0.77533 0.93506 1.20993 1.32721 1.13617 0.88825 0.91235 1.24886 0.94860 0.95077 0.99091 1.69881 1.35927 1.22530 1.24378 0.86308 0.79267 0.79548 0.80882 1.19874 1.21007 1.19926 1.86488 1.75371 1.43398 1.21073 1.23243 0.75049 0.85967 0.86384 1.90586 1.48950 1.16785 1.84628 1.20370 1.02393 0.89002 0.84123 0.86141 1.22064 0.98177 0.98109 1.02927 1.45851 1.43159 1.23336 1.24338 1.20599 0.78311 0.87714 0.82380 1.90666 1.45187 1.29397 1.76442 1.21945 1.01661 0.94470 0.95204 1.22400 0.99735 0.94440 0.98965 1.22507 0.98195 0.97382 0.98006 1.22368 0.97966 0.94857 1.01029 1.22167 0.95062 1.00915 0.97493 0.88147 0.94302 0.96549 0.92281 0.92027 0.89720 0.91057 0.75357 0.88284 0.90865 0.90592 0.91297 0.91283 0.91593 0.91475 0.91483 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.83 9.33 37.16 0.35 -3.48 16 2 C 0.22 5.69 2.56 -27.88 -0.07 5.62 16 3 H 0.05 1.36 7.16 -51.93 -0.37 0.99 16 4 C -0.52 -14.56 8.90 -34.44 -0.31 -14.86 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 O -0.35 -8.05 9.77 -39.26 -0.38 -8.44 16 13 C 0.45 9.07 7.30 36.01 0.26 9.33 16 14 O -0.52 -11.42 15.06 -18.75 -0.28 -11.70 16 15 C 0.15 2.31 3.09 -69.08 -0.21 2.10 16 16 H 0.12 1.94 7.58 -51.93 -0.39 1.55 16 17 C -0.15 -2.09 9.42 37.16 0.35 -1.74 16 18 N -0.71 -9.72 4.88 -54.93 -0.27 -9.99 16 19 C 0.52 6.92 6.96 -10.98 -0.08 6.84 16 20 O -0.54 -8.75 14.87 5.56 0.08 -8.67 16 21 C -0.11 -1.09 3.29 -90.65 -0.30 -1.39 16 22 C -0.12 -1.08 6.30 -25.03 -0.16 -1.24 16 23 C -0.12 -0.96 6.91 -24.70 -0.17 -1.13 16 24 C -0.12 -1.04 6.83 -25.07 -0.17 -1.21 16 25 C -0.12 -1.12 6.40 -25.61 -0.16 -1.28 16 26 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 1.15 8.11 -51.93 -0.42 0.73 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.41 5.23 7.79 -40.82 -0.32 4.92 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.80 7.85 -51.93 -0.41 0.39 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.05 6.39 -51.92 -0.33 0.72 16 LS Contribution 345.97 15.07 5.21 5.21 Total: -1.00 -30.70 345.97 -7.55 -38.25 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -6.75 Total: 4.60 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.76 Total: -0.82 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.36 Total: -34.34 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.58 Total: -28.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.70 -7.55 -38.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733709402.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.800 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds