Wall clock time and date at job start Tue Mar 31 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46828 * 2 1 4 4 C 1.52996 * 109.47352 * 119.99892 * 2 1 3 5 5 C 1.53004 * 109.47336 * 295.00605 * 4 2 1 6 6 C 1.54272 * 110.02642 * 292.16435 * 5 4 2 7 7 C 1.54885 * 104.19095 * 217.10479 * 6 5 4 8 8 C 1.54888 * 102.75363 * 37.94333 * 7 6 5 9 9 C 1.53870 * 110.03128 * 175.00188 * 5 4 2 10 10 C 1.50697 * 109.47194 * 240.00529 * 2 1 3 11 11 O 1.20833 * 119.99747 * 240.00031 * 10 2 1 12 12 O 1.34230 * 120.00262 * 59.71653 * 10 2 1 13 13 C 1.45202 * 116.99836 * 180.27336 * 12 10 2 14 14 C 1.50701 * 109.46859 * 180.02562 * 13 12 10 15 15 O 1.21285 * 120.00079 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99566 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99580 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00075 * 0.02562 * 17 16 14 19 19 C 1.38949 * 119.99723 * 179.97438 * 17 16 14 20 20 N 1.31414 * 119.99947 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00427 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47170 * 89.99362 * 21 19 17 23 23 H 1.48497 * 109.47589 * 209.99443 * 21 19 17 24 24 H 1.48501 * 109.46996 * 330.00115 * 21 19 17 25 25 H 1.09003 * 109.47167 * 299.99666 * 1 2 3 26 26 H 1.09001 * 109.47378 * 60.00060 * 1 2 3 27 27 H 1.09004 * 109.46828 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47046 * 55.00126 * 4 2 1 29 29 H 1.08999 * 109.47456 * 175.00152 * 4 2 1 30 30 H 1.08994 * 110.01546 * 53.60283 * 5 4 2 31 31 H 1.08999 * 110.49017 * 335.78405 * 6 5 4 32 32 H 1.08996 * 110.48670 * 98.43038 * 6 5 4 33 33 H 1.09001 * 110.75860 * 279.62771 * 7 6 5 34 34 H 1.09000 * 110.91468 * 156.33296 * 7 6 5 35 35 H 1.08992 * 110.48780 * 203.37979 * 8 7 6 36 36 H 1.09007 * 110.48378 * 80.73508 * 8 7 6 37 37 H 1.09008 * 110.02573 * 238.56521 * 9 5 4 38 38 H 1.08998 * 110.03465 * 359.94142 * 9 5 4 39 39 H 1.08998 * 109.47630 * 300.00638 * 13 12 10 40 40 H 1.09004 * 109.46770 * 60.01042 * 13 12 10 41 41 H 0.97001 * 120.00823 * 359.97438 * 16 14 13 42 42 H 0.96994 * 120.00087 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 0.0689 2.4954 6 6 2.3979 1.4091 2.5420 7 6 2.6997 1.6221 4.0462 8 6 3.0219 0.1887 4.5366 9 6 2.0321 -0.7071 3.7634 10 6 2.0324 -0.7103 -1.2305 11 8 2.7271 -1.6927 -1.1197 12 8 1.7035 -0.2549 -2.4496 13 6 2.2180 -0.9925 -3.5897 14 6 1.7492 -0.3386 -4.8639 15 8 1.0507 0.6517 -4.8160 16 7 2.1062 -0.8544 -6.0568 17 6 1.6802 -0.2593 -7.2161 18 1 1.0589 0.6231 -7.1734 19 6 2.0487 -0.7907 -8.4459 20 7 1.6399 -0.2206 -9.5571 21 14 3.1239 -2.3164 -8.5198 22 1 2.2645 -3.5274 -8.5335 23 1 3.9492 -2.2812 -9.7538 24 1 4.0126 -2.3537 -7.3307 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.6055 -1.7198 1.2951 29 1 3.1264 -0.7994 1.2056 30 1 0.5605 0.2500 2.4894 31 1 3.3249 1.3406 1.9729 32 1 1.7735 2.2168 2.1602 33 1 1.8262 2.0199 4.5629 34 1 3.5589 2.2789 4.1815 35 1 2.8529 0.1057 5.6101 36 1 4.0498 -0.0769 4.2895 37 1 1.1499 -0.9017 4.3734 38 1 2.5122 -1.6470 3.4911 39 1 3.3076 -0.9921 -3.5610 40 1 1.8538 -2.0192 -3.5525 41 1 2.6652 -1.6463 -6.0952 42 1 1.8969 -0.5918 -10.4156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734054229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:00 Heat of formation + Delta-G solvation = -149.449203 kcal Electronic energy + Delta-G solvation = -22028.897536 eV Core-core repulsion = 18587.031060 eV Total energy + Delta-G solvation = -3441.866475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.58302 -38.90940 -38.25589 -36.23371 -34.70268 -34.05174 -31.79269 -29.95845 -28.95414 -28.47509 -25.99430 -24.69008 -23.32805 -21.09099 -20.25919 -19.63731 -19.46491 -18.57358 -17.52468 -16.56468 -16.47334 -15.92122 -15.60711 -15.14929 -14.93176 -14.70525 -14.03395 -13.74129 -13.63087 -13.21165 -13.19985 -12.92335 -12.42261 -12.35226 -12.21010 -12.02967 -11.67709 -11.54554 -11.39042 -11.28900 -11.25796 -10.94371 -10.86762 -10.78207 -10.64620 -10.56845 -10.46424 -10.23605 -10.04161 -9.67003 -8.65344 -8.28661 -6.38741 -3.91560 2.29099 2.67107 2.99188 3.03817 3.12372 3.56734 4.04202 4.25018 4.29356 4.35490 4.51350 4.67858 4.76742 4.88856 5.11774 5.12833 5.16490 5.18570 5.24993 5.27142 5.38232 5.39527 5.49249 5.55560 5.56798 5.63647 5.67054 5.68602 5.69933 5.81636 5.84146 5.92101 6.01520 6.04326 6.10918 6.23820 6.58285 7.45686 7.85512 8.01841 8.48723 8.84338 9.30631 9.66653 10.73592 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041911 B = 0.002749 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.920360 B =10183.143308 C =10463.054575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 H 0.110 0.890 4 C -0.097 4.097 5 C -0.094 4.094 6 C -0.125 4.125 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.121 4.121 10 C 0.461 3.539 11 O -0.516 6.516 12 O -0.323 6.323 13 C 0.057 3.943 14 C 0.448 3.552 15 O -0.557 6.557 16 N -0.580 5.580 17 C -0.308 4.308 18 H 0.122 0.878 19 C 0.045 3.955 20 N -0.875 5.875 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.268 1.268 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.373 0.627 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.252 -1.798 25.571 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.101 4.101 3 H 0.127 0.873 4 C -0.134 4.134 5 C -0.112 4.112 6 C -0.162 4.162 7 C -0.163 4.163 8 C -0.163 4.163 9 C -0.159 4.159 10 C 0.304 3.696 11 O -0.405 6.405 12 O -0.238 6.238 13 C -0.021 4.021 14 C 0.233 3.767 15 O -0.439 6.439 16 N -0.221 5.221 17 C -0.436 4.436 18 H 0.140 0.860 19 C -0.159 4.159 20 N -0.515 5.515 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.194 1.194 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.206 0.794 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.968 -1.414 25.341 25.457 hybrid contribution 1.039 -1.403 -0.424 1.796 sum 3.006 -2.816 24.917 25.255 Atomic orbital electron populations 1.21841 0.91918 1.03015 1.03707 1.21066 0.98508 1.01126 0.89370 0.87256 1.21642 1.01845 0.98767 0.91182 1.21864 1.00483 0.94913 0.93954 1.22517 1.00385 0.96845 0.96482 1.22491 1.01131 0.96726 0.95976 1.22362 0.99419 0.95149 0.99390 1.22203 0.99091 0.98729 0.95846 1.23879 0.77397 0.82973 0.85362 1.90637 1.36168 1.26164 1.87539 1.86567 1.68683 1.54481 1.14024 1.22736 0.99630 0.95651 0.84095 1.19208 0.86461 0.87466 0.83543 1.90599 1.40196 1.26706 1.86350 1.42047 1.47056 1.27481 1.05477 1.19424 1.30551 1.12618 0.81004 0.86018 1.25038 0.97745 0.98198 0.94949 1.69613 1.44307 1.39971 0.97573 0.86675 0.80841 0.83304 0.78663 1.19418 1.19950 1.19366 0.90949 0.90585 0.92144 0.91032 0.90813 0.90381 0.91315 0.91436 0.91628 0.91741 0.91954 0.91706 0.91886 0.91558 0.89541 0.89529 0.79400 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.89 37.16 0.33 -1.13 16 2 C -0.08 -0.90 2.75 -91.77 -0.25 -1.15 16 3 H 0.11 1.09 7.37 -51.93 -0.38 0.71 16 4 C -0.10 -0.92 3.16 -26.73 -0.08 -1.01 16 5 C -0.09 -0.71 2.80 -89.50 -0.25 -0.96 16 6 C -0.12 -0.92 5.46 -25.07 -0.14 -1.06 16 7 C -0.13 -0.83 6.91 -24.74 -0.17 -1.01 16 8 C -0.13 -0.84 6.83 -25.07 -0.17 -1.01 16 9 C -0.12 -0.86 6.46 -25.62 -0.17 -1.02 16 10 C 0.46 7.00 7.26 36.00 0.26 7.26 16 11 O -0.52 -8.69 15.67 -18.76 -0.29 -8.98 16 12 O -0.32 -5.84 9.65 -45.90 -0.44 -6.28 16 13 C 0.06 1.04 5.94 36.01 0.21 1.25 16 14 C 0.45 10.49 7.86 -10.99 -0.09 10.40 16 15 O -0.56 -15.38 16.08 -14.11 -0.23 -15.61 16 16 N -0.58 -13.90 5.09 -10.97 -0.06 -13.96 16 17 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 18 H 0.12 3.89 7.39 -52.49 -0.39 3.51 16 19 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 20 N -0.88 -25.23 13.96 55.50 0.77 -24.46 16 21 Si 0.88 19.15 27.74 -169.99 -4.71 14.44 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 24 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 25 H 0.07 0.55 6.45 -51.93 -0.33 0.21 16 26 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.77 7.82 -51.93 -0.41 0.36 16 30 H 0.08 0.55 6.33 -51.93 -0.33 0.22 16 31 H 0.07 0.54 7.76 -51.93 -0.40 0.14 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 38 H 0.07 0.49 7.67 -51.93 -0.40 0.09 16 39 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 40 H 0.09 1.41 8.13 -51.93 -0.42 0.98 16 41 H 0.37 7.79 5.76 -40.82 -0.24 7.55 16 42 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -32.82 343.24 -7.24 -40.06 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.69 Total: 6.73 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -0.76 Total: 2.89 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.72 Total: -38.42 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.96 Total: -30.87 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.71 Total: 14.44 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.82 -7.24 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734054229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.389 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds