Wall clock time and date at job start Tue Mar 31 2020 06:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 O 1.45206 * 109.47147 * 240.00299 * 2 1 3 5 5 C 1.34229 * 116.99848 * 89.99847 * 4 2 1 6 6 O 1.20826 * 120.00265 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99888 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47134 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47016 * 180.02562 * 8 7 5 10 10 C 1.52996 * 117.49575 * 243.74458 * 9 8 7 11 11 C 1.52994 * 117.49721 * 175.08519 * 9 8 7 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21285 * 120.00040 * 114.99997 * 12 2 1 14 14 N 1.34778 * 119.99902 * 295.00139 * 12 2 1 15 15 C 1.46493 * 120.00087 * 359.97438 * 14 12 2 16 16 C 1.46505 * 119.99823 * 179.97438 * 14 12 2 17 17 C 1.50697 * 109.46900 * 89.99912 * 16 14 12 18 18 H 1.07995 * 120.00161 * 0.02562 * 17 16 14 19 19 C 1.37880 * 120.00017 * 179.97438 * 17 16 14 20 20 N 1.31522 * 119.99535 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00201 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46851 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46994 * 119.99941 * 21 19 17 24 24 H 1.48495 * 109.47157 * 240.00302 * 21 19 17 25 25 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 28 28 H 1.08996 * 109.47295 * 300.00299 * 7 5 4 29 29 H 1.08998 * 109.46637 * 60.00115 * 7 5 4 30 30 H 1.09006 * 109.46707 * 299.99777 * 8 7 5 31 31 H 1.08997 * 109.47580 * 59.99612 * 8 7 5 32 32 H 1.08998 * 115.54933 * 29.41626 * 9 8 7 33 33 H 1.08999 * 117.50303 * 359.97438 * 10 9 8 34 34 H 1.09001 * 117.49722 * 145.02534 * 10 9 8 35 35 H 1.09007 * 117.50284 * 214.97698 * 11 9 8 36 36 H 1.08999 * 117.50446 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.47115 * 89.99747 * 15 14 12 38 38 H 1.08998 * 109.47192 * 209.99907 * 15 14 12 39 39 H 1.08999 * 109.47064 * 329.99847 * 15 14 12 40 40 H 1.08997 * 109.46961 * 210.00478 * 16 14 12 41 41 H 1.09005 * 109.46984 * 329.99937 * 16 14 12 42 42 H 0.97003 * 119.99529 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 -1.1856 5 6 2.2171 0.0641 -2.2811 6 8 1.9982 1.2520 -2.2503 7 6 2.7193 -0.5768 -3.5493 8 6 2.8644 0.4895 -4.6369 9 6 3.3736 -0.1614 -5.9245 10 6 4.7460 0.2746 -6.4414 11 6 3.4760 0.7216 -7.1697 12 6 2.0324 -0.7104 1.2304 13 8 2.6531 -1.7467 1.1214 14 7 1.7920 -0.1942 2.4520 15 6 1.0427 1.0577 2.5836 16 6 2.2799 -0.8852 3.6481 17 6 3.6615 -0.3879 3.9870 18 1 4.1292 0.3676 3.3730 19 6 4.3282 -0.8966 5.0814 20 7 3.7584 -1.8162 5.8294 21 14 6.0405 -0.2797 5.5019 22 1 6.4533 0.7478 4.5123 23 1 6.0312 0.3185 6.8611 24 1 6.9979 -1.4142 5.4668 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 3.6884 -1.0398 -3.3633 29 1 2.0105 -1.3370 -3.8774 30 1 1.8954 0.9527 -4.8230 31 1 3.5733 1.2494 -4.3085 32 1 3.0894 -1.2038 -6.0686 33 1 5.2859 1.0254 -5.8645 34 1 5.3645 -0.4808 -6.9261 35 1 3.2595 0.2601 -8.1332 36 1 3.1801 1.7661 -7.0718 37 1 -0.0214 0.8372 2.6678 38 1 1.3755 1.5882 3.4758 39 1 1.2166 1.6793 1.7053 40 1 1.6073 -0.6862 4.4824 41 1 2.3162 -1.9580 3.4586 42 1 4.2276 -2.1744 6.5991 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734612221.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:29 Heat of formation + Delta-G solvation = -103.596437 kcal Electronic energy + Delta-G solvation = -22241.883009 eV Core-core repulsion = 18802.004858 eV Total energy + Delta-G solvation = -3439.878150 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.69043 -39.01336 -37.89708 -36.37318 -34.92226 -32.99500 -32.60200 -31.41271 -27.72808 -26.27405 -25.86342 -24.22717 -22.68492 -22.47671 -20.87426 -20.45589 -18.84171 -17.79781 -16.70966 -16.54118 -16.37419 -15.84632 -15.77083 -15.20163 -14.72903 -14.49310 -14.11507 -13.98895 -13.46684 -13.17764 -12.81204 -12.46564 -12.37515 -12.18005 -12.10130 -11.89105 -11.70494 -11.63807 -11.51510 -11.38473 -11.21464 -10.90412 -10.71860 -10.67573 -10.58472 -10.40086 -10.18459 -10.17642 -9.64441 -8.90735 -8.46304 -7.73637 -6.07169 -4.12022 2.20195 2.52472 3.25977 3.28914 3.36710 3.41472 3.48691 3.87556 4.36149 4.42780 4.49436 4.62619 4.68047 4.83148 4.92455 4.96834 5.07030 5.10429 5.20158 5.27566 5.34927 5.35962 5.54335 5.60803 5.64686 5.66138 5.68169 5.77667 5.83314 5.85125 5.99285 6.04657 6.21156 6.48642 6.97544 7.37813 7.45679 7.75893 7.89241 8.18947 8.28421 8.83928 8.98783 9.53144 11.01027 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020535 B = 0.003347 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.194233 B = 8364.805447 C = 9201.836727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.069 3.931 3 H 0.105 0.895 4 O -0.326 6.326 5 C 0.460 3.540 6 O -0.514 6.514 7 C -0.110 4.110 8 C -0.078 4.078 9 C -0.155 4.155 10 C -0.181 4.181 11 C -0.180 4.180 12 C 0.508 3.492 13 O -0.520 6.520 14 N -0.596 5.596 15 C 0.076 3.924 16 C 0.246 3.754 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.088 0.912 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.733 5.458 -20.319 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.010 3.990 3 H 0.123 0.877 4 O -0.241 6.241 5 C 0.303 3.697 6 O -0.403 6.403 7 C -0.148 4.148 8 C -0.115 4.115 9 C -0.173 4.173 10 C -0.218 4.218 11 C -0.217 4.217 12 C 0.292 3.708 13 O -0.396 6.396 14 N -0.330 5.330 15 C -0.068 4.068 16 C 0.127 3.873 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.447 5.133 -20.138 21.484 hybrid contribution 0.922 0.497 0.419 1.128 sum -4.525 5.630 -19.719 21.000 Atomic orbital electron populations 1.22268 0.92422 1.03975 1.03976 1.22617 0.95696 0.97608 0.83029 0.87747 1.86624 1.76386 1.41539 1.19591 1.23857 0.74109 0.85980 0.85727 1.90636 1.48516 1.16715 1.84439 1.21381 1.04260 0.99933 0.89212 1.21010 1.02646 0.96634 0.91243 1.22302 1.00698 0.99734 0.94530 1.23085 0.90768 1.03768 1.04174 1.22977 1.02349 1.00354 0.96060 1.19786 0.81167 0.85942 0.83855 1.90703 1.39642 1.23432 1.85774 1.48074 1.54058 1.23913 1.06925 1.21841 0.95353 0.86739 1.02823 1.19360 0.94338 0.93806 0.79754 1.21463 1.01000 1.22980 1.11234 0.92379 1.24941 0.98249 0.94889 0.96026 1.69946 1.38032 1.28074 1.17254 0.86424 0.84099 0.78758 0.78047 1.19789 1.20916 1.20804 0.89330 0.90988 0.91358 0.87263 0.87511 0.90576 0.90740 0.87421 0.88625 0.88791 0.88817 0.88716 0.93122 0.90294 0.92357 0.94584 0.93637 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.27 37.16 0.34 -1.88 16 2 C 0.07 1.17 2.16 -27.89 -0.06 1.11 16 3 H 0.10 1.71 6.14 -51.93 -0.32 1.39 16 4 O -0.33 -5.52 9.42 -45.88 -0.43 -5.96 16 5 C 0.46 6.54 7.93 36.01 0.29 6.82 16 6 O -0.51 -8.15 15.20 -18.75 -0.29 -8.43 16 7 C -0.11 -1.09 5.77 -27.88 -0.16 -1.25 16 8 C -0.08 -0.70 4.79 -26.73 -0.13 -0.83 16 9 C -0.15 -1.16 5.73 -90.63 -0.52 -1.68 16 10 C -0.18 -1.33 10.18 -26.70 -0.27 -1.60 16 11 C -0.18 -1.26 10.25 -26.70 -0.27 -1.53 16 12 C 0.51 11.03 7.10 -10.99 -0.08 10.96 16 13 O -0.52 -13.66 16.09 -14.05 -0.23 -13.88 16 14 N -0.60 -12.75 2.86 -182.96 -0.52 -13.27 16 15 C 0.08 1.20 8.92 59.84 0.53 1.73 16 16 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 17 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 21 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H 0.09 1.03 5.12 -51.93 -0.27 0.77 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.07 0.75 7.83 -51.93 -0.41 0.34 16 32 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.10 0.72 8.03 -51.93 -0.42 0.30 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.66 7.02 -51.93 -0.36 0.29 16 38 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 39 H 0.06 0.78 6.08 -51.93 -0.32 0.47 16 40 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -34.50 352.91 -7.86 -42.37 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -6.66 Total: -1.79 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.78 Total: 4.53 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.21 Total: -39.08 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.94 Total: -28.27 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.50 -7.86 -42.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734612221.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.231 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds