Wall clock time and date at job start Tue Mar 31 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46779 * 2 1 4 4 O 1.45202 * 109.47179 * 120.00383 * 2 1 3 5 5 C 1.34233 * 116.99710 * 269.99958 * 4 2 1 6 6 O 1.20827 * 119.99916 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99707 * 180.02562 * 5 4 2 8 8 C 1.53001 * 109.46540 * 179.97438 * 7 5 4 9 9 C 1.53008 * 109.46738 * 179.97438 * 8 7 5 10 10 C 1.52995 * 117.49846 * 243.74891 * 9 8 7 11 11 C 1.52992 * 117.49815 * 175.08712 * 9 8 7 12 12 C 1.50702 * 109.46657 * 240.00222 * 2 1 3 13 13 O 1.21288 * 119.99618 * 254.97181 * 12 2 1 14 14 N 1.34775 * 120.00189 * 74.97721 * 12 2 1 15 15 C 1.46497 * 119.99963 * 4.86595 * 14 12 2 16 16 C 1.46501 * 119.99706 * 184.87417 * 14 12 2 17 17 C 1.50702 * 109.47099 * 90.00044 * 16 14 12 18 18 H 1.08001 * 120.00233 * 359.97438 * 17 16 14 19 19 C 1.37876 * 119.99731 * 180.02562 * 17 16 14 20 20 N 1.31514 * 120.00060 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46922 * 59.99977 * 21 19 17 23 23 H 1.48495 * 109.47289 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47456 * 300.00085 * 21 19 17 25 25 H 1.09001 * 109.46880 * 176.95877 * 1 2 3 26 26 H 1.08995 * 109.46824 * 296.95084 * 1 2 3 27 27 H 1.09000 * 109.47314 * 56.95462 * 1 2 3 28 28 H 1.09000 * 109.47073 * 299.99513 * 7 5 4 29 29 H 1.08990 * 109.47106 * 60.00171 * 7 5 4 30 30 H 1.09000 * 109.47194 * 299.99628 * 8 7 5 31 31 H 1.09003 * 109.47276 * 60.00108 * 8 7 5 32 32 H 1.08999 * 115.54833 * 29.41969 * 9 8 7 33 33 H 1.09001 * 117.50099 * 359.97438 * 10 9 8 34 34 H 1.09002 * 117.49927 * 145.02266 * 10 9 8 35 35 H 1.09002 * 117.50286 * 214.97920 * 11 9 8 36 36 H 1.09000 * 117.50115 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.46906 * 84.70121 * 15 14 12 38 38 H 1.09001 * 109.47437 * 204.70010 * 15 14 12 39 39 H 1.08999 * 109.47366 * 324.70337 * 15 14 12 40 40 H 1.09007 * 109.46581 * 209.99402 * 16 14 12 41 41 H 1.08996 * 109.47020 * 329.99272 * 16 14 12 42 42 H 0.96999 * 119.99900 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0141 -0.6846 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9983 1.2518 2.2503 7 6 2.7194 -0.5772 3.5491 8 6 2.8645 0.4891 4.6368 9 6 3.3738 -0.1619 5.9244 10 6 2.4511 -0.1310 7.1444 11 6 3.6954 0.7596 7.1025 12 6 2.0323 -0.7104 -1.2305 13 8 2.4912 -1.8294 -1.1398 14 7 1.9716 -0.1022 -2.4317 15 6 1.5174 1.2873 -2.5271 16 6 2.3598 -0.8307 -3.6420 17 6 1.1542 -1.5290 -4.2165 18 1 0.1948 -1.4394 -3.7286 19 6 1.2762 -2.2830 -5.3643 20 7 2.4445 -2.3925 -5.9581 21 14 -0.2181 -3.1491 -6.0760 22 1 -1.2575 -2.1444 -6.4156 23 1 0.1754 -3.8875 -7.3028 24 1 -0.7602 -4.1035 -5.0758 25 1 -0.3633 -1.0262 -0.0545 26 1 -0.3633 0.4658 0.9160 27 1 -0.3634 0.5604 -0.8614 28 1 2.0106 -1.3374 3.8773 29 1 3.6885 -1.0401 3.3631 30 1 3.5736 1.2490 4.3083 31 1 1.8956 0.9524 4.8229 32 1 4.0003 -1.0436 5.7894 33 1 1.4814 0.3535 7.0300 34 1 2.4709 -0.9921 7.8124 35 1 4.5332 0.4841 7.7430 36 1 3.5437 1.8297 6.9605 37 1 2.3568 1.9575 -2.3417 38 1 1.1187 1.4716 -3.5247 39 1 0.7387 1.4667 -1.7858 40 1 2.7578 -0.1299 -4.3760 41 1 3.1227 -1.5683 -3.3931 42 1 2.5302 -2.9227 -6.7658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734612222.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:31 Heat of formation + Delta-G solvation = -104.407016 kcal Electronic energy + Delta-G solvation = -22198.820038 eV Core-core repulsion = 18758.906738 eV Total energy + Delta-G solvation = -3439.913300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70376 -39.00170 -37.92083 -36.39235 -34.88876 -32.96302 -32.61254 -31.43617 -27.79106 -26.21258 -25.88033 -24.21143 -22.71289 -22.48859 -20.88635 -20.46157 -18.81726 -17.79067 -16.71081 -16.56525 -16.44120 -15.85870 -15.72294 -15.10235 -14.81194 -14.44497 -14.33877 -13.95929 -13.44007 -13.08895 -12.84831 -12.44752 -12.33689 -12.16841 -12.07325 -11.92284 -11.74593 -11.63528 -11.55702 -11.36352 -11.23488 -10.93533 -10.74536 -10.67484 -10.55492 -10.42642 -10.20533 -10.18584 -9.68776 -8.91543 -8.46152 -7.72868 -6.07204 -4.12685 2.17924 2.50582 3.23595 3.30410 3.34980 3.38725 3.46087 3.88621 4.34038 4.41551 4.47562 4.60175 4.67018 4.82802 4.90161 5.00246 5.06773 5.12030 5.19720 5.27208 5.31977 5.33845 5.48678 5.58039 5.64379 5.70041 5.74699 5.76630 5.80598 5.86127 6.01883 6.07798 6.25037 6.47456 6.98256 7.38949 7.45859 7.73883 7.88699 8.18424 8.28767 8.82831 8.97963 9.52388 11.00883 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036564 B = 0.002908 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.586908 B = 9626.718869 C = 9745.085394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.070 3.930 3 H 0.102 0.898 4 O -0.327 6.327 5 C 0.459 3.541 6 O -0.514 6.514 7 C -0.111 4.111 8 C -0.078 4.078 9 C -0.155 4.155 10 C -0.181 4.181 11 C -0.180 4.180 12 C 0.510 3.490 13 O -0.521 6.521 14 N -0.596 5.596 15 C 0.073 3.927 16 C 0.246 3.754 17 C -0.530 4.530 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.705 7.847 21.007 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 H 0.120 0.880 4 O -0.242 6.242 5 C 0.303 3.697 6 O -0.403 6.403 7 C -0.148 4.148 8 C -0.115 4.115 9 C -0.173 4.173 10 C -0.218 4.218 11 C -0.217 4.217 12 C 0.294 3.706 13 O -0.397 6.397 14 N -0.330 5.330 15 C -0.071 4.071 16 C 0.127 3.873 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.429 7.509 20.812 22.130 hybrid contribution -0.890 -0.317 -0.581 1.109 sum -1.319 7.192 20.232 21.512 Atomic orbital electron populations 1.22161 0.92175 1.04296 1.03452 1.22652 0.96005 0.97347 0.82864 0.88041 1.86639 1.76319 1.41585 1.19649 1.23870 0.74154 0.85971 0.85750 1.90636 1.48528 1.16724 1.84436 1.21384 1.04258 1.00017 0.89156 1.21010 1.02444 0.96632 0.91425 1.22314 1.03571 1.01731 0.89669 1.23079 0.95154 1.02500 1.01099 1.22979 0.99561 0.97647 1.01524 1.19780 0.80277 0.86741 0.83811 1.90696 1.44738 1.18787 1.85432 1.48078 1.64506 1.12802 1.07611 1.21857 0.98779 0.82917 1.03556 1.19366 0.96643 0.92035 0.79255 1.21387 0.95256 1.30777 1.09464 0.92415 1.24940 0.96230 0.96194 0.96698 1.69922 1.23128 1.40472 1.19718 0.86539 0.82645 0.79763 0.78367 1.20217 1.21137 1.20134 0.90683 0.91365 0.89534 0.87407 0.87363 0.90506 0.90808 0.87374 0.88695 0.88821 0.88777 0.88696 0.93444 0.90068 0.92187 0.94628 0.93584 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.29 37.16 0.35 -2.02 16 2 C 0.07 1.19 2.14 -27.88 -0.06 1.13 16 3 H 0.10 1.59 6.39 -51.93 -0.33 1.26 16 4 O -0.33 -5.48 9.46 -45.78 -0.43 -5.92 16 5 C 0.46 6.35 7.93 36.01 0.29 6.64 16 6 O -0.51 -7.92 15.20 -18.75 -0.29 -8.20 16 7 C -0.11 -1.05 5.77 -27.88 -0.16 -1.22 16 8 C -0.08 -0.67 4.79 -26.73 -0.13 -0.80 16 9 C -0.15 -1.12 5.73 -90.62 -0.52 -1.64 16 10 C -0.18 -1.21 10.18 -26.70 -0.27 -1.48 16 11 C -0.18 -1.21 10.25 -26.70 -0.27 -1.48 16 12 C 0.51 11.08 6.97 -10.99 -0.08 11.00 16 13 O -0.52 -13.64 16.12 -13.62 -0.22 -13.86 16 14 N -0.60 -12.82 2.86 -182.95 -0.52 -13.34 16 15 C 0.07 1.16 9.85 59.85 0.59 1.75 16 16 C 0.25 6.44 5.17 -5.19 -0.03 6.41 16 17 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 18 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 21 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.09 1.15 6.02 -51.93 -0.31 0.84 16 28 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.07 0.67 7.83 -51.93 -0.41 0.27 16 32 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.09 0.62 8.03 -51.93 -0.42 0.21 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 39 H 0.06 0.80 4.70 -51.93 -0.24 0.56 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 354.57 15.07 5.34 5.34 Total: -1.00 -34.05 354.57 -7.82 -41.87 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.70 Total: -1.56 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -0.72 Total: 4.72 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.21 Total: -39.06 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.94 Total: -27.98 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.05 -7.82 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734612222.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.537 kcal (2) G-P(sol) polarization free energy of solvation -34.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds