Wall clock time and date at job start Tue Mar 31 2020 06:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47332 * 2 1 4 4 C 1.46501 * 119.99988 * 269.99587 * 3 2 1 5 5 C 1.50696 * 109.47654 * 270.00416 * 4 3 2 6 6 H 1.08008 * 119.99469 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00586 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00403 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47214 * 89.99523 * 9 7 5 11 11 H 1.48501 * 109.47165 * 209.99603 * 9 7 5 12 12 H 1.48499 * 109.47045 * 329.99778 * 9 7 5 13 13 C 1.34775 * 120.00299 * 90.00014 * 3 2 1 14 14 O 1.21279 * 120.00111 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99770 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46862 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99776 * 179.97438 * 16 15 13 18 18 O 1.20831 * 120.00246 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46957 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.46626 * 180.02562 * 20 19 17 22 22 C 1.53003 * 117.49663 * 243.74292 * 21 20 19 23 23 C 1.53002 * 117.49643 * 175.08260 * 21 20 19 24 24 H 1.09009 * 109.46648 * 60.00084 * 1 2 3 25 25 H 1.09003 * 109.47696 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47503 * 300.00829 * 1 2 3 27 27 H 1.09005 * 109.46899 * 239.99810 * 2 1 3 28 28 H 1.08997 * 109.46909 * 120.00213 * 2 1 3 29 29 H 1.09007 * 109.47157 * 30.00524 * 4 3 2 30 30 H 1.09002 * 109.47120 * 149.99757 * 4 3 2 31 31 H 0.97000 * 119.99987 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47313 * 60.00180 * 15 13 3 33 33 H 1.08998 * 109.46923 * 300.00098 * 15 13 3 34 34 H 1.08993 * 109.46700 * 60.00121 * 19 17 16 35 35 H 1.09000 * 109.46974 * 300.00495 * 19 17 16 36 36 H 1.08993 * 109.47839 * 60.00178 * 20 19 17 37 37 H 1.09000 * 109.47160 * 299.99740 * 20 19 17 38 38 H 1.09002 * 115.55153 * 29.41498 * 21 20 19 39 39 H 1.08998 * 117.49856 * 0.02562 * 22 21 20 40 40 H 1.09000 * 117.49861 * 145.02337 * 22 21 20 41 41 H 1.08993 * 117.50251 * 214.97577 * 23 21 20 42 42 H 1.09003 * 117.49715 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2306 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3496 3.1264 -3.6176 9 14 5.9139 2.0972 -3.4164 10 1 5.9777 0.8764 -4.2595 11 1 6.3929 3.2648 -4.1989 12 1 6.7738 1.9172 -2.2191 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1961 3.5759 17 6 2.1333 1.7128 4.8162 18 8 1.7339 0.5835 4.9746 19 6 2.4394 2.5783 6.0114 20 6 2.1609 1.7929 7.2945 21 6 2.4711 2.6719 8.5079 22 6 3.6028 2.2231 9.4345 23 6 2.1466 2.1057 9.8918 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6757 3.5169 -4.4435 32 1 2.6211 0.4186 2.5303 33 1 0.9432 1.0126 2.5298 34 1 1.8106 3.4682 5.9860 35 1 3.4883 2.8737 5.9870 36 1 2.7899 0.9031 7.3198 37 1 1.1121 1.4972 7.3192 38 1 2.3377 3.7434 8.3586 39 1 4.1267 1.3019 9.1795 40 1 4.2139 2.9993 9.8952 41 1 1.8004 2.8046 10.6531 42 1 1.7127 1.1068 9.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734613232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:07 Heat of formation + Delta-G solvation = -108.710436 kcal Electronic energy + Delta-G solvation = -21929.176685 eV Core-core repulsion = 18489.076775 eV Total energy + Delta-G solvation = -3440.099910 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.58749 -38.99937 -37.92671 -36.38077 -35.30558 -32.86899 -32.65998 -30.18882 -29.21132 -26.76538 -25.35655 -23.08998 -22.70911 -22.58836 -21.01286 -20.53324 -18.66790 -17.73932 -16.87591 -16.64964 -16.41993 -15.90913 -15.80557 -15.28595 -14.96536 -14.40674 -14.06595 -14.04873 -13.46936 -13.18596 -12.90775 -12.64710 -12.36234 -12.12537 -12.05987 -11.90677 -11.66960 -11.64010 -11.52166 -11.24165 -10.95010 -10.88289 -10.72876 -10.61372 -10.53140 -10.44639 -10.20500 -10.15537 -9.67062 -8.99980 -8.45672 -7.76220 -6.06690 -4.11595 2.16578 2.48199 3.24625 3.29395 3.36247 3.41242 3.46183 3.86078 4.34551 4.42647 4.48144 4.60248 4.68771 4.87556 4.89586 5.00089 5.14860 5.19519 5.22299 5.27976 5.32493 5.35015 5.38743 5.57911 5.58438 5.64334 5.72376 5.74929 5.80745 5.98734 6.01735 6.18160 6.40325 6.44098 6.98933 7.38717 7.46366 7.71513 7.89449 8.19482 8.29009 8.83786 8.98606 9.53475 11.01481 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.003031 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.906762 B = 9234.213330 C = 9952.759171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.519 6.519 15 C 0.049 3.951 16 O -0.330 6.330 17 C 0.460 3.540 18 O -0.515 6.515 19 C -0.110 4.110 20 C -0.078 4.078 21 C -0.155 4.155 22 C -0.181 4.181 23 C -0.180 4.180 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.619 -4.795 20.768 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.291 3.709 14 O -0.395 6.395 15 C -0.028 4.028 16 O -0.245 6.245 17 C 0.303 3.697 18 O -0.404 6.404 19 C -0.148 4.148 20 C -0.115 4.115 21 C -0.173 4.173 22 C -0.218 4.218 23 C -0.217 4.217 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.525 -4.402 20.576 21.522 hybrid contribution 0.897 -0.383 -0.485 1.089 sum -3.628 -4.785 20.090 20.968 Atomic orbital electron populations 1.22234 0.96536 1.01689 1.02409 1.21505 0.93756 0.83962 1.03015 1.48213 1.63831 1.13406 1.07160 1.19332 0.96477 0.93715 0.77578 1.21425 0.96848 1.32056 1.06358 0.92409 1.24936 0.97942 0.94844 0.96369 1.69933 1.35735 1.33328 1.14318 0.86480 0.84570 0.77681 0.78599 1.20629 1.21053 1.19866 1.19729 0.79701 0.87152 0.84323 1.90714 1.44487 1.17538 1.86752 1.22954 1.02642 0.92671 0.84534 1.86575 1.78424 1.44991 1.14485 1.23868 0.74034 0.87026 0.84774 1.90653 1.42759 1.20224 1.86788 1.21382 1.05502 0.98852 0.89039 1.21009 1.03048 0.97310 0.90156 1.22314 1.04043 0.99963 0.90975 1.23083 0.91452 1.03328 1.03955 1.22980 0.98764 1.02667 0.97307 0.91784 0.91895 0.93143 0.89417 0.91766 0.94630 0.93705 0.92666 0.88742 0.88809 0.87380 0.87296 0.90773 0.90540 0.87375 0.88663 0.88802 0.88787 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.05 -0.02 1.59 16 3 N -0.59 -12.48 2.46 -175.06 -0.43 -12.91 16 4 C 0.25 6.41 5.16 -5.20 -0.03 6.39 16 5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.44 13.29 55.43 0.74 -25.70 16 9 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.80 7.75 -10.98 -0.09 10.71 16 14 O -0.52 -13.46 16.08 -14.10 -0.23 -13.69 16 15 C 0.05 0.81 4.50 36.01 0.16 0.97 16 16 O -0.33 -5.48 9.75 -45.90 -0.45 -5.93 16 17 C 0.46 6.28 7.96 36.01 0.29 6.57 16 18 O -0.52 -7.89 15.73 -18.75 -0.30 -8.18 16 19 C -0.11 -1.04 5.77 -27.88 -0.16 -1.20 16 20 C -0.08 -0.67 4.79 -26.73 -0.13 -0.80 16 21 C -0.15 -1.11 5.73 -90.61 -0.52 -1.63 16 22 C -0.18 -1.24 10.18 -26.69 -0.27 -1.51 16 23 C -0.18 -1.20 10.26 -26.69 -0.27 -1.48 16 24 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 27 H 0.09 1.42 8.07 -51.93 -0.42 1.00 16 28 H 0.06 0.86 6.44 -51.93 -0.33 0.52 16 29 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 32 H 0.09 1.41 7.39 -51.93 -0.38 1.03 16 33 H 0.09 1.34 7.18 -51.93 -0.37 0.97 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 37 H 0.08 0.70 8.10 -51.93 -0.42 0.27 16 38 H 0.11 0.70 8.08 -51.93 -0.42 0.28 16 39 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 40 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 358.22 15.07 5.40 5.40 Total: -1.00 -34.05 358.22 -8.22 -42.27 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.86 Total: -2.20 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -1.08 Total: 4.16 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.31 Total: -38.61 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.97 Total: -27.80 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.05 -8.22 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734613232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.439 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds