Wall clock time and date at job start Tue Mar 31 2020 06:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46495 * 109.47332 * 2 1 4 4 C 1.46501 * 119.99988 * 269.99587 * 3 2 1 5 5 C 1.50696 * 109.47654 * 270.00416 * 4 3 2 6 6 H 1.08008 * 119.99469 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00586 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99840 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00403 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47214 * 89.99523 * 9 7 5 11 11 H 1.48501 * 109.47165 * 209.99603 * 9 7 5 12 12 H 1.48499 * 109.47045 * 329.99778 * 9 7 5 13 13 C 1.34775 * 120.00299 * 90.00014 * 3 2 1 14 14 O 1.21279 * 120.00111 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99770 * 359.97438 * 13 3 2 16 16 O 1.45198 * 109.46862 * 180.02562 * 15 13 3 17 17 C 1.34230 * 116.99776 * 179.97438 * 16 15 13 18 18 O 1.20831 * 120.00246 * 0.02562 * 17 16 15 19 19 C 1.50706 * 120.00139 * 179.97438 * 17 16 15 20 20 C 1.52999 * 109.46957 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.46626 * 180.02562 * 20 19 17 22 22 C 1.53003 * 117.49663 * 243.74292 * 21 20 19 23 23 C 1.53002 * 117.49643 * 175.08260 * 21 20 19 24 24 H 1.09009 * 109.46648 * 60.00084 * 1 2 3 25 25 H 1.09003 * 109.47696 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47503 * 300.00829 * 1 2 3 27 27 H 1.09005 * 109.46899 * 239.99810 * 2 1 3 28 28 H 1.08997 * 109.46909 * 120.00213 * 2 1 3 29 29 H 1.09007 * 109.47157 * 30.00524 * 4 3 2 30 30 H 1.09002 * 109.47120 * 149.99757 * 4 3 2 31 31 H 0.97000 * 119.99987 * 180.02562 * 8 7 5 32 32 H 1.08994 * 109.47313 * 60.00180 * 15 13 3 33 33 H 1.08998 * 109.46923 * 300.00098 * 15 13 3 34 34 H 1.08993 * 109.46700 * 60.00121 * 19 17 16 35 35 H 1.09000 * 109.46974 * 300.00495 * 19 17 16 36 36 H 1.08993 * 109.47839 * 60.00178 * 20 19 17 37 37 H 1.09000 * 109.47160 * 299.99740 * 20 19 17 38 38 H 1.09002 * 115.55153 * 29.41498 * 21 20 19 39 39 H 1.08998 * 117.49856 * 0.02562 * 22 21 20 40 40 H 1.09000 * 117.49861 * 145.02337 * 22 21 20 41 41 H 1.08993 * 117.50251 * 214.97577 * 23 21 20 42 42 H 1.09003 * 117.49715 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2626 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2306 -1.0957 7 6 4.1495 2.3902 -2.8775 8 7 3.3496 3.1264 -3.6176 9 14 5.9139 2.0972 -3.4164 10 1 5.9777 0.8764 -4.2595 11 1 6.3929 3.2648 -4.1989 12 1 6.7738 1.9172 -2.2191 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 8 2.3054 2.1961 3.5759 17 6 2.1333 1.7128 4.8162 18 8 1.7339 0.5835 4.9746 19 6 2.4394 2.5783 6.0114 20 6 2.1609 1.7929 7.2945 21 6 2.4711 2.6719 8.5079 22 6 3.6028 2.2231 9.4345 23 6 2.1466 2.1057 9.8918 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6757 3.5169 -4.4435 32 1 2.6211 0.4186 2.5303 33 1 0.9432 1.0126 2.5298 34 1 1.8106 3.4682 5.9860 35 1 3.4883 2.8737 5.9870 36 1 2.7899 0.9031 7.3198 37 1 1.1121 1.4972 7.3192 38 1 2.3377 3.7434 8.3586 39 1 4.1267 1.3019 9.1795 40 1 4.2139 2.9993 9.8952 41 1 1.8004 2.8046 10.6531 42 1 1.7127 1.1068 9.9378 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734613232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:06 Heat of formation + Delta-G solvation = -127.784520 kcal Electronic energy + Delta-G solvation = -21930.003799 eV Core-core repulsion = 18489.076775 eV Total energy + Delta-G solvation = -3440.927024 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.78246 -40.58929 -38.57166 -37.57823 -36.97798 -34.94582 -33.44836 -31.75327 -30.66817 -28.51805 -26.35165 -24.82431 -24.12049 -23.19378 -21.95874 -21.24542 -20.27181 -18.90465 -18.64026 -18.05439 -17.91689 -17.38397 -16.81183 -16.51468 -16.29226 -15.93700 -15.24582 -15.00047 -14.76730 -14.47256 -14.42273 -13.85729 -13.74939 -13.60258 -13.29089 -13.13624 -13.07779 -12.68815 -12.51462 -12.48984 -12.27514 -12.23317 -12.16135 -12.05867 -11.79773 -11.72323 -11.68968 -11.12098 -10.77970 -10.72896 -10.64801 -9.55752 -8.23880 -6.38461 1.10356 1.29566 1.36971 1.39863 1.50126 1.61032 2.32328 2.45291 2.93436 3.06167 3.42195 3.57687 3.73146 3.88845 3.96127 4.04244 4.07815 4.14377 4.25173 4.36775 4.37073 4.55751 4.57732 4.67557 4.84094 4.87897 4.93408 5.00795 5.01807 5.08755 5.09384 5.18105 5.29717 5.30968 5.34966 5.45007 5.53406 5.78863 6.03355 6.54061 6.66523 6.70742 7.20361 7.35805 8.83612 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023545 B = 0.003031 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.906762 B = 9234.213330 C = 9952.759171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.927 5.927 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.498 3.502 14 O -0.578 6.578 15 C 0.061 3.939 16 O -0.352 6.352 17 C 0.460 3.540 18 O -0.532 6.532 19 C -0.105 4.105 20 C -0.072 4.072 21 C -0.158 4.158 22 C -0.184 4.184 23 C -0.180 4.180 24 H 0.044 0.956 25 H 0.097 0.903 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.030 0.970 30 H 0.000 1.000 31 H 0.268 0.732 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.119 0.881 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.263 -6.156 22.252 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.028 4.028 3 N -0.328 5.328 4 C 0.141 3.859 5 C -0.583 4.583 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.198 1.198 13 C 0.286 3.714 14 O -0.458 6.458 15 C -0.015 4.015 16 O -0.268 6.268 17 C 0.305 3.695 18 O -0.422 6.422 19 C -0.142 4.142 20 C -0.109 4.109 21 C -0.176 4.176 22 C -0.221 4.221 23 C -0.217 4.217 24 H 0.063 0.937 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.018 0.982 31 H 0.077 0.923 32 H 0.133 0.867 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.196 -5.820 22.079 23.216 hybrid contribution 0.737 0.024 -0.911 1.172 sum -3.460 -5.797 21.168 22.218 Atomic orbital electron populations 1.22176 0.94305 1.03787 1.01839 1.21860 0.95577 0.80987 1.04370 1.48217 1.63591 1.15261 1.05727 1.18795 0.95615 0.91671 0.79770 1.21693 0.97794 1.32210 1.06652 0.92799 1.25857 1.02452 0.94393 0.96401 1.70049 1.37803 1.34054 1.14780 0.85400 0.78900 0.78216 0.78201 1.18768 1.20614 1.19806 1.20581 0.78307 0.86652 0.85886 1.90675 1.47134 1.20198 1.87772 1.22790 1.04568 0.92066 0.82106 1.86591 1.79001 1.45700 1.15480 1.24647 0.73143 0.87293 0.84437 1.90639 1.43674 1.21134 1.86738 1.21548 1.06661 0.98787 0.87225 1.20943 1.02459 0.97166 0.90349 1.22302 1.04560 1.00248 0.90539 1.23150 0.91625 1.03497 1.03818 1.23058 0.98655 1.02848 0.97164 0.93669 0.88382 0.92437 0.89986 0.88473 0.95234 0.98229 0.92333 0.86691 0.86183 0.85523 0.85967 0.91693 0.91147 0.86319 0.88953 0.87943 0.87760 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 10.24 71.98 0.74 -3.27 16 2 C 0.09 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.35 2.46 -826.16 -2.03 -27.38 16 4 C 0.26 14.14 5.16 85.63 0.44 14.58 16 5 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 6 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 7 C 0.01 0.47 5.46 84.65 0.46 0.93 16 8 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 9 Si 0.97 44.88 29.54 68.60 2.03 46.91 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 11 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.50 21.47 7.75 87.66 0.68 22.15 16 14 O -0.58 -31.12 16.08 15.77 0.25 -30.87 16 15 C 0.06 1.93 4.50 71.24 0.32 2.25 16 16 O -0.35 -11.34 9.75 -45.06 -0.44 -11.78 16 17 C 0.46 11.85 7.96 71.24 0.57 12.42 16 18 O -0.53 -15.32 15.73 21.95 0.35 -14.98 16 19 C -0.11 -1.79 5.77 29.85 0.17 -1.61 16 20 C -0.07 -1.12 4.79 30.60 0.15 -0.97 16 21 C -0.16 -1.97 5.73 -10.79 -0.06 -2.03 16 22 C -0.18 -2.19 10.18 30.62 0.31 -1.88 16 23 C -0.18 -2.08 10.26 30.62 0.31 -1.77 16 24 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 25 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 1.33 7.22 -2.39 -0.02 1.32 16 27 H 0.08 2.58 8.07 -2.38 -0.02 2.56 16 28 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 29 H 0.03 1.60 8.07 -2.38 -0.02 1.58 16 30 H 0.00 -0.03 7.42 -2.39 -0.02 -0.04 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.12 3.14 7.39 -2.39 -0.02 3.13 16 33 H 0.12 3.13 7.18 -2.39 -0.02 3.12 16 34 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.13 7.83 -2.39 -0.02 1.11 16 37 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 38 H 0.12 1.24 8.08 -2.39 -0.02 1.22 16 39 H 0.09 1.14 8.03 -2.39 -0.02 1.12 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 41 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.16 358.22 6.28 -69.88 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.99 Total: 10.94 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 4.84 Total: 12.97 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -1.74 Total: -83.08 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: 0.16 Total: -57.62 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -76.16 6.28 -69.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734613232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.902 kcal (2) G-P(sol) polarization free energy of solvation -76.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds