Wall clock time and date at job start Tue Mar 31 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47294 * 2 1 4 4 C 1.53001 * 109.47376 * 239.99434 * 2 1 3 5 5 C 1.52999 * 109.47071 * 300.00183 * 4 2 1 6 6 C 1.52995 * 109.47053 * 299.99582 * 5 4 2 7 7 C 1.53004 * 109.47323 * 60.00474 * 6 5 4 8 8 H 1.09004 * 109.46832 * 59.99550 * 7 6 5 9 9 C 1.52993 * 109.47550 * 179.97438 * 7 6 5 10 10 C 1.50699 * 109.47076 * 295.00089 * 9 7 6 11 11 O 1.21296 * 120.00099 * 359.97438 * 10 9 7 12 12 N 1.34782 * 119.99858 * 179.97438 * 10 9 7 13 13 C 1.37101 * 119.99697 * 179.97438 * 12 10 9 14 14 H 1.07994 * 119.99937 * 16.51368 * 13 12 10 15 15 C 1.38955 * 119.99538 * 196.51151 * 13 12 10 16 16 N 1.31411 * 120.00004 * 21.64480 * 15 13 12 17 17 Si 1.86801 * 119.99712 * 201.64352 * 15 13 12 18 18 H 1.48499 * 109.47087 * 90.00131 * 17 15 13 19 19 H 1.48497 * 109.47098 * 210.00173 * 17 15 13 20 20 H 1.48500 * 109.47254 * 330.00369 * 17 15 13 21 21 C 1.46495 * 119.99946 * 359.97438 * 12 10 9 22 22 C 1.50699 * 109.47336 * 84.06829 * 21 12 10 23 23 O 1.20821 * 119.99864 * 359.97438 * 22 21 12 24 24 O 1.34228 * 120.00095 * 179.97438 * 22 21 12 25 25 C 1.52999 * 109.46669 * 299.99761 * 7 6 5 26 26 H 1.09005 * 109.47154 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47342 * 300.00358 * 1 2 3 28 28 H 1.08996 * 109.47188 * 60.00648 * 1 2 3 29 29 H 1.09004 * 109.46912 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.46702 * 60.00173 * 4 2 1 31 31 H 1.09003 * 109.46681 * 180.02562 * 5 4 2 32 32 H 1.08995 * 109.47359 * 60.00259 * 5 4 2 33 33 H 1.09004 * 109.47196 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47860 * 300.00058 * 6 5 4 35 35 H 1.09001 * 109.47409 * 54.99922 * 9 7 6 36 36 H 1.09001 * 109.47412 * 175.00131 * 9 7 6 37 37 H 0.97000 * 119.99085 * 180.02562 * 16 15 13 38 38 H 1.09007 * 109.46975 * 204.06794 * 21 12 10 39 39 H 1.08998 * 109.47246 * 324.06090 * 21 12 10 40 40 H 0.96700 * 117.00019 * 180.02562 * 24 22 21 41 41 H 1.08995 * 109.47359 * 299.99396 * 25 7 6 42 42 H 1.09007 * 109.47138 * 179.97438 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.5300 -2.1638 -1.2490 6 6 2.0401 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2495 8 1 0.4400 -2.1637 1.2494 9 6 2.0394 -2.8852 2.4987 10 6 1.4381 -4.2655 2.5619 11 8 0.6766 -4.6357 1.6934 12 7 1.7466 -5.0888 3.5836 13 6 1.1991 -6.3444 3.6413 14 1 0.7450 -6.7765 2.7619 15 6 1.2286 -7.0610 4.8315 16 7 1.3735 -6.4300 5.9750 17 14 1.0621 -8.9214 4.8058 18 1 2.4084 -9.5373 4.6906 19 1 0.4148 -9.3779 6.0619 20 1 0.2308 -9.3281 3.6444 21 6 2.6668 -4.6419 4.6322 22 6 1.9060 -3.8496 5.6640 23 8 0.7173 -3.6757 5.5362 24 8 2.5491 -3.3372 6.7249 25 6 2.0400 -0.7212 1.2493 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 3.1301 -0.7217 -1.2488 30 1 1.6767 -0.2076 -2.1392 31 1 1.8938 -2.6778 -2.1388 32 1 0.4401 -2.1639 -1.2491 33 1 1.6771 -3.9128 0.0001 34 1 3.1300 -2.8850 0.0003 35 1 3.1258 -2.9637 2.4554 36 1 1.7510 -2.3222 3.3865 37 1 1.3944 -6.9304 6.8057 38 1 3.1262 -5.5094 5.1063 39 1 3.4424 -4.0152 4.1921 40 1 2.0188 -2.8368 7.3601 41 1 3.1300 -0.7212 1.2495 42 1 1.6763 -0.2072 2.1391 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736775481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:38 Heat of formation + Delta-G solvation = -144.814589 kcal Electronic energy + Delta-G solvation = -23847.987127 eV Core-core repulsion = 20406.321624 eV Total energy + Delta-G solvation = -3441.665504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.70384 -38.99365 -37.81080 -35.26322 -34.51481 -32.64499 -31.71969 -31.18013 -27.78311 -27.07426 -26.55740 -24.39702 -22.01298 -21.36248 -20.97281 -18.67766 -18.40639 -17.17358 -16.86946 -16.15507 -15.68286 -15.26817 -14.86577 -14.51144 -14.43490 -14.14023 -13.88681 -13.71279 -13.49300 -12.72256 -12.41975 -12.28315 -11.98178 -11.86662 -11.64953 -11.53409 -11.38244 -11.15396 -11.06933 -10.94918 -10.79782 -10.59411 -10.42850 -10.35104 -10.31662 -9.89773 -9.72555 -9.70051 -9.56019 -9.02231 -8.37312 -7.87341 -6.43682 -3.87184 3.14866 3.24883 3.30279 3.45271 3.67409 4.09146 4.26073 4.69591 4.89707 4.93500 4.96940 5.08041 5.37599 5.45258 5.54500 5.57383 5.64176 5.71768 5.82371 5.83757 5.91503 5.98916 6.03670 6.07601 6.10357 6.18534 6.20165 6.28418 6.44790 6.46756 6.52750 6.54100 6.59646 6.63699 6.93320 6.98448 7.48427 7.56171 8.02263 8.39426 9.02650 9.12091 9.33801 9.88907 10.65517 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021854 B = 0.005192 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.933363 B = 5391.385205 C = 6253.410887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 H 0.062 0.938 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.066 4.066 8 H 0.078 0.922 9 C -0.132 4.132 10 C 0.465 3.535 11 O -0.571 6.571 12 N -0.436 5.436 13 C -0.304 4.304 14 H 0.107 0.893 15 C 0.028 3.972 16 N -0.884 5.884 17 Si 0.928 3.072 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.270 1.270 21 C 0.147 3.853 22 C 0.489 3.511 23 O -0.503 6.503 24 O -0.535 6.535 25 C -0.111 4.111 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.270 0.730 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.391 0.609 41 H 0.059 0.941 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 10.250 -5.333 12.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 H 0.081 0.919 4 C -0.151 4.151 5 C -0.156 4.156 6 C -0.155 4.155 7 C -0.085 4.085 8 H 0.097 0.903 9 C -0.173 4.173 10 C 0.254 3.746 11 O -0.454 6.454 12 N -0.156 5.156 13 C -0.431 4.431 14 H 0.125 0.875 15 C -0.175 4.175 16 N -0.524 5.524 17 Si 0.755 3.245 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.194 1.194 21 C 0.020 3.980 22 C 0.329 3.671 23 O -0.389 6.389 24 O -0.346 6.346 25 C -0.148 4.148 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.248 0.752 41 H 0.077 0.923 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.192 9.805 -5.908 12.569 hybrid contribution -0.471 -0.527 1.011 1.233 sum 4.722 9.278 -4.897 11.504 Atomic orbital electron populations 1.21959 0.95470 1.02666 1.00898 1.21056 0.95946 0.98452 0.95265 0.91922 1.21573 1.00180 0.96284 0.97016 1.21545 1.01073 0.94881 0.98071 1.21689 0.99319 1.01398 0.93094 1.20846 1.01268 0.92728 0.93618 0.90329 1.21681 1.00698 0.95537 0.99335 1.20092 0.84124 0.85883 0.84513 1.90479 1.38451 1.76213 1.40290 1.43486 1.39887 1.13501 1.18737 1.19719 1.36878 0.88834 0.97653 0.87489 1.25216 0.97260 1.00737 0.94247 1.69807 1.49169 1.35794 0.97616 0.85887 0.78407 0.82411 0.77799 1.20333 1.21167 1.19404 1.20654 0.90702 0.99087 0.87575 1.23892 0.87331 0.75115 0.80788 1.90613 1.16492 1.55654 1.76102 1.84528 1.47034 1.67251 1.35818 1.21653 1.00213 0.95846 0.97109 0.91449 0.93029 0.93315 0.92377 0.92724 0.92724 0.91810 0.89335 0.93254 0.90675 0.90718 0.91985 0.85521 0.90532 0.75232 0.92252 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.50 37.16 0.32 -1.53 16 2 C -0.09 -1.04 3.20 -90.62 -0.29 -1.33 16 3 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.11 -1.30 5.45 -26.73 -0.15 -1.45 16 5 C -0.12 -1.59 5.65 -26.73 -0.15 -1.74 16 6 C -0.12 -1.88 4.94 -26.73 -0.13 -2.02 16 7 C -0.07 -1.08 1.56 -90.62 -0.14 -1.22 16 8 H 0.08 1.47 6.24 -51.93 -0.32 1.14 16 9 C -0.13 -2.43 3.79 -27.89 -0.11 -2.54 16 10 C 0.46 11.08 7.13 -10.98 -0.08 11.00 16 11 O -0.57 -15.22 13.61 5.54 0.08 -15.14 16 12 N -0.44 -10.90 2.18 -116.09 -0.25 -11.15 16 13 C -0.30 -8.32 9.34 -14.93 -0.14 -8.46 16 14 H 0.11 3.08 7.37 -52.49 -0.39 2.69 16 15 C 0.03 0.72 4.87 -17.47 -0.09 0.63 16 16 N -0.88 -23.26 9.28 55.50 0.52 -22.75 16 17 Si 0.93 20.57 29.60 -169.99 -5.03 15.53 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 21 C 0.15 3.16 4.97 -5.20 -0.03 3.14 16 22 C 0.49 10.79 5.86 36.00 0.21 11.00 16 23 O -0.50 -13.11 16.79 -18.75 -0.31 -13.42 16 24 O -0.54 -9.56 13.42 -39.25 -0.53 -10.09 16 25 C -0.11 -1.46 4.73 -26.73 -0.13 -1.58 16 26 H 0.07 0.92 4.81 -51.93 -0.25 0.68 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.90 6.43 -51.93 -0.33 0.57 16 33 H 0.09 1.72 5.95 -51.93 -0.31 1.41 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.20 7.41 -51.93 -0.38 0.82 16 36 H 0.07 1.39 7.52 -51.93 -0.39 1.00 16 37 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.13 2.85 6.37 -51.92 -0.33 2.52 16 39 H 0.08 1.34 6.69 -51.93 -0.35 0.99 16 40 H 0.39 5.37 9.10 45.56 0.41 5.79 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 325.68 15.07 4.91 4.91 Total: -1.00 -32.09 325.68 -7.10 -39.19 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.58 Total: 9.01 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.89 Total: 3.90 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.26 Total: -33.90 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.77 Total: -38.65 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.09 -7.10 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736775481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.621 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds