Wall clock time and date at job start Tue Mar 31 2020 06:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47002 * 2 1 4 4 C 1.53000 * 109.47527 * 239.99890 * 2 1 3 5 5 C 1.52992 * 109.47521 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.46886 * 60.00004 * 5 4 2 7 7 C 1.52997 * 109.47325 * 300.00073 * 6 5 4 8 8 C 1.53002 * 109.47204 * 59.99964 * 7 6 5 9 9 H 1.09002 * 109.47002 * 60.00045 * 8 7 6 10 10 C 1.52997 * 109.47204 * 180.02562 * 8 7 6 11 11 C 1.50694 * 109.47297 * 294.99908 * 10 8 7 12 12 O 1.21290 * 119.99899 * 0.02562 * 11 10 8 13 13 N 1.34778 * 120.00044 * 179.97438 * 11 10 8 14 14 C 1.37095 * 119.99836 * 179.97438 * 13 11 10 15 15 H 1.08003 * 120.00349 * 337.40166 * 14 13 11 16 16 C 1.38951 * 119.99944 * 157.39716 * 14 13 11 17 17 N 1.31413 * 120.00103 * 349.77671 * 16 14 13 18 18 Si 1.86801 * 120.00149 * 169.77462 * 16 14 13 19 19 H 1.48499 * 109.47046 * 60.00003 * 18 16 14 20 20 H 1.48500 * 109.47215 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47141 * 299.99914 * 18 16 14 22 22 C 1.46503 * 119.99975 * 0.02562 * 13 11 10 23 23 C 1.50694 * 109.46857 * 277.86907 * 22 13 11 24 24 O 1.20827 * 120.00296 * 359.97438 * 23 22 13 25 25 O 1.34230 * 119.99672 * 180.27569 * 23 22 13 26 26 H 1.08994 * 109.47351 * 300.00020 * 1 2 3 27 27 H 1.09007 * 109.46652 * 60.00081 * 1 2 3 28 28 H 1.09002 * 109.47002 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46529 * 59.99868 * 4 2 1 30 30 H 1.09002 * 109.46893 * 300.00594 * 4 2 1 31 31 H 1.09002 * 109.47648 * 300.00286 * 5 4 2 32 32 H 1.08998 * 109.47799 * 179.97438 * 5 4 2 33 33 H 1.09006 * 109.47334 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47088 * 60.00155 * 6 5 4 35 35 H 1.09002 * 109.47104 * 300.00072 * 7 6 5 36 36 H 1.08999 * 109.47111 * 179.97438 * 7 6 5 37 37 H 1.08996 * 109.46891 * 174.99564 * 10 8 7 38 38 H 1.09004 * 109.46903 * 55.00289 * 10 8 7 39 39 H 0.96994 * 120.00152 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.46670 * 157.86881 * 22 13 11 41 41 H 1.08993 * 109.46901 * 37.87040 * 22 13 11 42 42 H 0.96707 * 116.99788 * 179.71938 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 6 2.0405 -0.7209 1.2493 9 1 1.6775 -1.7487 1.2495 10 6 1.5305 0.0009 2.4982 11 6 1.9296 -0.7765 3.7259 12 8 2.5604 -1.8063 3.6131 13 7 1.5865 -0.3269 4.9493 14 6 1.9492 -1.0345 6.0661 15 1 2.1706 -2.0888 5.9893 16 6 2.0321 -0.3952 7.2970 17 7 1.9618 0.9154 7.3628 18 14 2.2434 -1.3986 8.8584 19 1 3.5016 -2.1831 8.7761 20 1 2.3038 -0.4865 10.0287 21 1 1.0922 -2.3241 9.0117 22 6 0.8251 0.9173 5.0855 23 6 1.7652 2.0925 5.0084 24 8 2.9498 1.9096 4.8557 25 8 1.2874 3.3423 5.1153 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6767 -0.2074 -2.1392 30 1 1.6767 -1.7489 -1.2492 31 1 3.9331 0.3071 -1.2497 32 1 3.9335 -1.2349 -2.1392 33 1 5.1706 -1.4408 -0.0001 34 1 3.7176 -2.4694 0.0000 35 1 3.9335 0.3075 1.2488 36 1 3.9338 -1.2342 2.1390 37 1 0.4442 0.0788 2.4546 38 1 1.9648 0.9997 2.5434 39 1 2.0193 1.3617 8.2221 40 1 0.3114 0.9253 6.0469 41 1 0.0924 0.9847 4.2814 42 1 1.9294 4.0636 5.0638 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736783374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:06 Heat of formation + Delta-G solvation = -147.357171 kcal Electronic energy + Delta-G solvation = -24015.841402 eV Core-core repulsion = 20574.065644 eV Total energy + Delta-G solvation = -3441.775758 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.68827 -38.88092 -37.65930 -35.22491 -34.47965 -32.82603 -31.78113 -31.41380 -27.81776 -27.37511 -25.82661 -24.31141 -21.83193 -21.10243 -20.71339 -19.46392 -18.62555 -17.17028 -16.85462 -16.19956 -15.67864 -14.81640 -14.67457 -14.51408 -14.40917 -14.10035 -14.03094 -13.74319 -13.33481 -13.02170 -12.35467 -12.07110 -11.92835 -11.82495 -11.58314 -11.54802 -11.42629 -11.19339 -11.10345 -10.93758 -10.67609 -10.55029 -10.45428 -10.36454 -10.31273 -10.04673 -9.76314 -9.60363 -9.54491 -9.02235 -8.34558 -7.83242 -6.39193 -3.92972 3.18568 3.24345 3.27883 3.46414 3.71167 4.11168 4.27241 4.71239 4.90009 4.95358 5.02891 5.12873 5.34243 5.38682 5.58545 5.63637 5.68877 5.77330 5.79378 5.84637 5.90079 5.97171 6.04898 6.07767 6.16171 6.21317 6.26264 6.32006 6.45043 6.48432 6.53382 6.56732 6.65553 6.68870 6.94341 7.05468 7.49713 7.54850 8.05787 8.40962 9.04170 9.13146 9.33884 9.89613 10.69100 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021162 B = 0.005440 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.830988 B = 5145.804646 C = 5750.588051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.057 4.057 9 H 0.074 0.926 10 C -0.135 4.135 11 C 0.468 3.532 12 O -0.571 6.571 13 N -0.438 5.438 14 C -0.299 4.299 15 H 0.103 0.897 16 C 0.028 3.972 17 N -0.895 5.895 18 Si 0.934 3.066 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.148 3.852 23 C 0.490 3.510 24 O -0.507 6.507 25 O -0.535 6.535 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.270 0.730 40 H 0.133 0.867 41 H 0.072 0.928 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.068 2.879 -11.445 12.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.076 4.076 9 H 0.093 0.907 10 C -0.175 4.175 11 C 0.257 3.743 12 O -0.454 6.454 13 N -0.159 5.159 14 C -0.426 4.426 15 H 0.121 0.879 16 C -0.173 4.173 17 N -0.536 5.536 18 Si 0.761 3.239 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.022 3.978 23 C 0.331 3.669 24 O -0.393 6.393 25 O -0.346 6.346 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.150 0.850 41 H 0.090 0.910 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -3.693 2.094 -11.345 12.113 hybrid contribution 0.642 0.466 1.011 1.285 sum -3.050 2.560 -10.334 11.075 Atomic orbital electron populations 1.21908 0.95639 1.01777 1.01366 1.21201 0.95162 0.99529 0.94898 0.91552 1.21553 0.95557 1.00560 0.97131 1.21550 0.95730 1.00532 0.97832 1.21511 0.99654 0.99509 0.94678 1.21686 0.94939 1.00186 0.98807 1.20819 0.95827 0.99353 0.91594 0.90742 1.21762 1.01319 1.00092 0.94320 1.20161 0.82367 0.87494 0.84237 1.90479 1.42547 1.26265 1.86071 1.43387 1.48012 1.19000 1.05455 1.19648 1.44492 0.94243 0.84240 0.87902 1.25276 0.96629 0.95619 0.99820 1.69639 1.50276 1.07376 1.26322 0.85868 0.79081 0.78947 0.80008 1.19906 1.21028 1.19911 1.20651 0.91207 0.81335 1.04644 1.23905 0.89560 0.82893 0.70535 1.90609 1.18094 1.85254 1.45340 1.84535 1.45946 1.17542 1.86545 0.92275 0.93195 0.92722 0.92582 0.92111 0.92370 0.92723 0.92663 0.92204 0.93176 0.89246 0.90324 0.90645 0.91901 0.84952 0.91026 0.75308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.85 37.16 0.33 -1.41 16 2 C -0.09 -1.18 2.25 -90.62 -0.20 -1.38 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.11 -1.30 5.20 -26.74 -0.14 -1.44 16 5 C -0.12 -1.44 5.92 -26.73 -0.16 -1.60 16 6 C -0.12 -1.67 5.92 -26.73 -0.16 -1.83 16 7 C -0.12 -2.09 4.95 -26.73 -0.13 -2.22 16 8 C -0.06 -0.95 1.37 -90.62 -0.12 -1.07 16 9 H 0.07 1.33 7.96 -51.93 -0.41 0.92 16 10 C -0.13 -2.50 3.58 -27.89 -0.10 -2.60 16 11 C 0.47 11.22 7.04 -10.99 -0.08 11.14 16 12 O -0.57 -15.29 13.66 5.55 0.08 -15.21 16 13 N -0.44 -10.99 2.20 -116.10 -0.26 -11.25 16 14 C -0.30 -8.19 9.29 -14.93 -0.14 -8.32 16 15 H 0.10 2.93 7.40 -52.48 -0.39 2.54 16 16 C 0.03 0.73 5.10 -17.47 -0.09 0.64 16 17 N -0.89 -23.53 9.00 55.50 0.50 -23.03 16 18 Si 0.93 20.81 29.56 -169.99 -5.03 15.79 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 22 C 0.15 3.22 4.95 -5.19 -0.03 3.19 16 23 C 0.49 10.84 5.69 36.00 0.21 11.05 16 24 O -0.51 -13.15 16.63 -18.75 -0.31 -13.46 16 25 O -0.53 -9.60 13.42 -39.26 -0.53 -10.12 16 26 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.93 5.95 -51.93 -0.31 1.62 16 37 H 0.08 1.27 5.46 -51.93 -0.28 0.98 16 38 H 0.08 1.43 7.26 -51.93 -0.38 1.05 16 39 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 40 H 0.13 3.02 6.32 -51.93 -0.33 2.69 16 41 H 0.07 1.27 6.78 -51.93 -0.35 0.91 16 42 H 0.39 5.40 9.10 45.56 0.41 5.81 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -31.98 328.21 -7.14 -39.12 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -5.73 Total: 9.07 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.81 Total: 4.16 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.24 Total: -34.28 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.76 Total: -38.80 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.98 -7.14 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736783374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.240 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds