Wall clock time and date at job start Tue Mar 31 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47178 * 2 1 4 4 C 1.52994 * 109.47480 * 120.00155 * 2 1 3 5 5 C 1.53004 * 109.46819 * 59.99909 * 4 2 1 6 6 C 1.52995 * 109.47292 * 60.00279 * 5 4 2 7 7 C 1.53006 * 109.47215 * 300.00032 * 6 5 4 8 8 C 1.52994 * 109.47031 * 59.99751 * 7 6 5 9 9 H 1.09001 * 109.47375 * 60.00529 * 8 7 6 10 10 C 1.52997 * 109.47188 * 180.02562 * 8 7 6 11 11 C 1.50697 * 109.47187 * 295.00234 * 10 8 7 12 12 O 1.21296 * 119.99653 * 359.97438 * 11 10 8 13 13 N 1.34777 * 120.00105 * 179.97438 * 11 10 8 14 14 C 1.37097 * 119.99811 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00224 * 16.25404 * 14 13 11 16 16 C 1.38953 * 119.99793 * 196.26347 * 14 13 11 17 17 N 1.31407 * 120.00166 * 21.12668 * 16 14 13 18 18 Si 1.86809 * 119.99794 * 201.12980 * 16 14 13 19 19 H 1.48498 * 109.46911 * 89.99688 * 18 16 14 20 20 H 1.48502 * 109.46971 * 209.99727 * 18 16 14 21 21 H 1.48499 * 109.47079 * 329.99653 * 18 16 14 22 22 C 1.46494 * 120.00150 * 0.02562 * 13 11 10 23 23 C 1.50693 * 109.47321 * 84.14353 * 22 13 11 24 24 O 1.20827 * 120.00414 * 359.97438 * 23 22 13 25 25 O 1.34228 * 119.99989 * 179.97438 * 23 22 13 26 26 H 1.08992 * 109.47113 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46577 * 299.99792 * 1 2 3 28 28 H 1.08994 * 109.47239 * 59.99443 * 1 2 3 29 29 H 1.08996 * 109.47309 * 179.97438 * 4 2 1 30 30 H 1.08997 * 109.47470 * 300.00126 * 4 2 1 31 31 H 1.09000 * 109.46615 * 179.97438 * 5 4 2 32 32 H 1.08996 * 109.46951 * 299.99939 * 5 4 2 33 33 H 1.08993 * 109.47565 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47178 * 59.99495 * 6 5 4 35 35 H 1.09001 * 109.46609 * 299.99811 * 7 6 5 36 36 H 1.08995 * 109.47061 * 180.02562 * 7 6 5 37 37 H 1.08997 * 109.47230 * 55.00164 * 10 8 7 38 38 H 1.08996 * 109.47525 * 175.00124 * 10 8 7 39 39 H 0.97005 * 119.99857 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.47273 * 204.14847 * 22 13 11 41 41 H 1.09005 * 109.46989 * 324.14172 * 22 13 11 42 42 H 0.96707 * 117.00008 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 6 1.5301 -2.1638 1.2491 6 6 2.0400 -2.8850 -0.0001 7 6 1.5300 -2.1637 -1.2494 8 6 2.0400 -0.7212 -1.2494 9 1 3.1300 -0.7212 -1.2494 10 6 1.5295 0.0003 -2.4982 11 6 2.1299 -0.6348 -3.7259 12 8 2.8915 -1.5720 -3.6130 13 7 1.8205 -0.1614 -4.9493 14 6 2.3663 -0.7396 -6.0662 15 1 2.8234 -1.7159 -6.0003 16 6 2.3314 -0.0694 -7.2829 17 7 2.1726 1.2348 -7.3104 18 14 2.5103 -1.0224 -8.8796 19 1 1.1690 -1.4452 -9.3566 20 1 3.1498 -0.1574 -9.9034 21 1 3.3542 -2.2222 -8.6481 22 6 0.9010 0.9708 -5.0856 23 6 1.6632 2.2599 -4.9180 24 8 2.8525 2.2355 -4.7059 25 8 1.0210 3.4354 -5.0043 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 3.1300 -0.7216 1.2489 30 1 1.6768 -0.2075 2.1392 31 1 1.8938 -2.6777 2.1388 32 1 0.4401 -2.1637 1.2491 33 1 1.6771 -3.9127 0.0000 34 1 3.1300 -2.8849 -0.0002 35 1 0.4400 -2.1637 -1.2494 36 1 1.8929 -2.6777 -2.1394 37 1 0.4432 -0.0766 -2.5437 38 1 1.8179 1.0505 -2.4546 39 1 2.1479 1.7025 -8.1598 40 1 0.4395 0.9473 -6.0728 41 1 0.1269 0.9044 -4.3210 42 1 1.5522 4.2354 -4.8895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736783377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:09 Heat of formation + Delta-G solvation = -142.814595 kcal Electronic energy + Delta-G solvation = -24003.440499 eV Core-core repulsion = 20561.861721 eV Total energy + Delta-G solvation = -3441.578777 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.78616 -39.02769 -37.76391 -35.24483 -34.49533 -32.50343 -31.66568 -31.29532 -27.89514 -27.49348 -26.09325 -24.33209 -22.03733 -21.45660 -21.01909 -18.79063 -18.06368 -17.17225 -16.87901 -16.26047 -15.67032 -15.38472 -14.94865 -14.45569 -14.38980 -14.15018 -13.89410 -13.69748 -13.26931 -12.72007 -12.58861 -12.26195 -11.97571 -11.91727 -11.64420 -11.55804 -11.37005 -11.32715 -10.99112 -10.95140 -10.81350 -10.47145 -10.42218 -10.33936 -10.27157 -9.90871 -9.72542 -9.65063 -9.56784 -9.02212 -8.37062 -7.87465 -6.43368 -3.87130 3.14977 3.24898 3.30324 3.45405 3.67769 4.09235 4.26236 4.70833 4.88630 4.92316 5.02161 5.10314 5.38009 5.46645 5.51427 5.56023 5.63546 5.71364 5.80879 5.86109 5.87347 5.92463 6.04207 6.06576 6.15033 6.21164 6.25426 6.33692 6.37951 6.45739 6.52060 6.54770 6.60617 6.65699 6.90927 7.00066 7.48582 7.56172 8.02296 8.39610 9.02778 9.12298 9.33987 9.89121 10.65748 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021641 B = 0.005460 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.516755 B = 5127.026626 C = 6058.438101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.058 4.058 9 H 0.074 0.926 10 C -0.132 4.132 11 C 0.464 3.536 12 O -0.571 6.571 13 N -0.436 5.436 14 C -0.303 4.303 15 H 0.107 0.893 16 C 0.027 3.973 17 N -0.885 5.885 18 Si 0.928 3.072 19 H -0.277 1.277 20 H -0.286 1.286 21 H -0.270 1.270 22 C 0.147 3.853 23 C 0.489 3.511 24 O -0.504 6.504 25 O -0.535 6.535 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.270 0.730 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 0.658 11.311 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.083 0.917 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.157 4.157 8 C -0.077 4.077 9 H 0.092 0.908 10 C -0.172 4.172 11 C 0.253 3.747 12 O -0.455 6.455 13 N -0.156 5.156 14 C -0.430 4.430 15 H 0.125 0.875 16 C -0.175 4.175 17 N -0.525 5.525 18 Si 0.755 3.245 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.194 1.194 22 C 0.020 3.980 23 C 0.329 3.671 24 O -0.389 6.389 25 O -0.346 6.346 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -6.224 -0.065 11.211 12.823 hybrid contribution 0.536 0.611 -0.969 1.265 sum -5.687 0.546 10.242 11.728 Atomic orbital electron populations 1.21981 0.95660 1.02028 1.01153 1.21161 0.95780 0.98959 0.94874 0.91658 1.21528 1.00517 0.95701 0.97177 1.21579 1.00696 0.95684 0.97757 1.21501 1.00798 0.98355 0.94716 1.21723 0.99579 0.95538 0.98824 1.20801 1.00730 0.94570 0.91623 0.90776 1.21712 1.00814 1.00329 0.94323 1.20115 0.84117 0.86566 0.83867 1.90481 1.38424 1.30800 1.85750 1.43484 1.39966 1.26607 1.05577 1.19726 1.36730 1.02058 0.84492 0.87490 1.25213 0.97286 0.95086 0.99886 1.69794 1.49287 1.06398 1.27048 0.85880 0.78419 0.79421 0.80739 1.20335 1.21161 1.19411 1.20662 0.90691 0.81868 1.04773 1.23897 0.87354 0.84874 0.70960 1.90614 1.16498 1.87139 1.44695 1.84530 1.47012 1.17103 1.85968 0.92014 0.93398 0.92536 0.92175 0.92567 0.92863 0.91992 0.92690 0.92225 0.92855 0.89384 0.90427 0.90761 0.91977 0.85425 0.90609 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 8.15 37.16 0.30 -1.45 16 2 C -0.09 -1.17 2.72 -90.62 -0.25 -1.42 16 3 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.11 -1.31 5.45 -26.73 -0.15 -1.46 16 5 C -0.12 -1.37 5.65 -26.73 -0.15 -1.52 16 6 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 7 C -0.12 -1.91 4.67 -26.73 -0.12 -2.03 16 8 C -0.06 -0.96 1.61 -90.62 -0.15 -1.11 16 9 H 0.07 1.40 7.96 -51.93 -0.41 0.99 16 10 C -0.13 -2.41 3.28 -27.89 -0.09 -2.50 16 11 C 0.46 11.07 7.13 -10.99 -0.08 10.99 16 12 O -0.57 -15.27 13.61 5.54 0.08 -15.19 16 13 N -0.44 -10.91 2.18 -116.10 -0.25 -11.16 16 14 C -0.30 -8.30 9.35 -14.93 -0.14 -8.44 16 15 H 0.11 3.08 7.37 -52.49 -0.39 2.70 16 16 C 0.03 0.71 4.89 -17.47 -0.09 0.63 16 17 N -0.88 -23.29 9.25 55.50 0.51 -22.77 16 18 Si 0.93 20.59 29.60 -169.99 -5.03 15.56 16 19 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C 0.15 3.17 4.97 -5.20 -0.03 3.15 16 23 C 0.49 10.81 5.87 36.00 0.21 11.02 16 24 O -0.50 -13.15 16.81 -18.75 -0.32 -13.46 16 25 O -0.54 -9.56 13.42 -39.25 -0.53 -10.09 16 26 H 0.06 0.71 4.81 -51.93 -0.25 0.46 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.66 6.54 -51.93 -0.34 0.32 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.78 6.43 -51.93 -0.33 0.45 16 36 H 0.09 1.71 5.95 -51.93 -0.31 1.40 16 37 H 0.08 1.24 5.98 -51.93 -0.31 0.93 16 38 H 0.07 1.38 7.52 -51.93 -0.39 0.99 16 39 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.13 2.88 6.34 -51.93 -0.33 2.55 16 41 H 0.08 1.32 6.68 -51.93 -0.35 0.98 16 42 H 0.39 5.38 9.10 45.56 0.41 5.79 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -32.16 322.27 -6.98 -39.15 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -5.42 Total: 9.00 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.88 Total: 4.12 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.26 Total: -33.94 kcal Atomic # 8 Polarization: -37.98 SS G_CDS: -0.77 Total: -38.75 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.16 -6.98 -39.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736783377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.669 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds