Wall clock time and date at job start Tue Mar 31 2020 06:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47406 * 2 1 4 4 C 1.52997 * 109.47253 * 120.00552 * 2 1 3 5 5 C 1.53001 * 109.47253 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46600 * 299.99598 * 5 4 2 7 7 C 1.53000 * 109.47500 * 60.00294 * 6 5 4 8 8 C 1.52998 * 109.46922 * 240.00349 * 2 1 3 9 9 H 1.09003 * 109.47499 * 299.99925 * 8 2 1 10 10 C 1.53000 * 109.47502 * 60.00096 * 8 2 1 11 11 C 1.50692 * 109.47570 * 185.00239 * 10 8 2 12 12 O 1.21293 * 120.00154 * 359.97438 * 11 10 8 13 13 N 1.34782 * 120.00332 * 179.97438 * 11 10 8 14 14 C 1.37097 * 120.00254 * 180.02562 * 13 11 10 15 15 H 1.08003 * 119.99549 * 343.50969 * 14 13 11 16 16 C 1.38945 * 120.00169 * 163.23802 * 14 13 11 17 17 N 1.31411 * 119.99979 * 339.33437 * 16 14 13 18 18 Si 1.86800 * 120.00233 * 159.33715 * 16 14 13 19 19 H 1.48502 * 109.47051 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47206 * 119.99696 * 18 16 14 21 21 H 1.48502 * 109.47198 * 239.99907 * 18 16 14 22 22 C 1.46496 * 119.99712 * 359.97438 * 13 11 10 23 23 C 1.50704 * 109.47333 * 276.01513 * 22 13 11 24 24 O 1.20824 * 119.99511 * 0.02562 * 23 22 13 25 25 O 1.34226 * 119.99971 * 180.02562 * 23 22 13 26 26 H 1.08999 * 109.47406 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46889 * 300.00044 * 1 2 3 28 28 H 1.08997 * 109.47297 * 59.99504 * 1 2 3 29 29 H 1.09004 * 109.46686 * 299.99528 * 4 2 1 30 30 H 1.08999 * 109.47365 * 59.99423 * 4 2 1 31 31 H 1.08999 * 109.47406 * 59.99448 * 5 4 2 32 32 H 1.08997 * 109.47297 * 179.97438 * 5 4 2 33 33 H 1.09005 * 109.46589 * 179.97438 * 6 5 4 34 34 H 1.09003 * 109.47822 * 299.99926 * 6 5 4 35 35 H 1.08996 * 109.47602 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46883 * 59.99057 * 7 6 5 37 37 H 1.08998 * 109.47308 * 64.99966 * 10 8 2 38 38 H 1.09003 * 109.46754 * 305.00072 * 10 8 2 39 39 H 0.96999 * 120.00229 * 180.02562 * 17 16 14 40 40 H 1.09003 * 109.46954 * 36.01600 * 22 13 11 41 41 H 1.08994 * 109.46950 * 156.01561 * 22 13 11 42 42 H 0.96701 * 116.99625 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5700 -0.7208 1.2495 6 6 4.0804 -1.4417 0.0002 7 6 3.5705 -0.7204 -1.2491 8 6 2.0400 -0.7212 -1.2493 9 1 1.6766 -1.7489 -1.2494 10 6 1.5300 0.0001 -2.4985 11 6 1.9285 -0.7781 -3.7259 12 8 2.5589 -1.8081 -3.6127 13 7 1.5845 -0.3296 -4.9494 14 6 1.9467 -1.0379 -6.0660 15 1 2.7173 -1.7918 -6.0008 16 6 1.3184 -0.7898 -7.2802 17 7 0.1416 -0.2054 -7.3038 18 14 2.1463 -1.2872 -8.8791 19 1 3.4554 -1.9223 -8.5820 20 1 1.2813 -2.2513 -9.6055 21 1 2.3607 -0.0828 -9.7211 22 6 0.8227 0.9142 -5.0861 23 6 -0.6463 0.6250 -4.9138 24 8 -1.0185 -0.5041 -4.6983 25 8 -1.5411 1.6218 -4.9996 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6767 -0.2075 2.1392 30 1 1.6767 -1.7490 1.2491 31 1 3.9331 0.3070 1.2497 32 1 3.9334 -1.2343 2.1396 33 1 5.1705 -1.4409 0.0002 34 1 3.7175 -2.4695 -0.0002 35 1 3.9344 -1.2336 -2.1391 36 1 3.9334 0.3075 -1.2487 37 1 1.9646 0.9986 -2.5444 38 1 0.4437 0.0783 -2.4548 39 1 -0.2972 -0.0325 -8.1514 40 1 1.1453 1.6235 -4.3239 41 1 0.9957 1.3394 -6.0747 42 1 -2.4719 1.3874 -4.8824 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736783378.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:12 Heat of formation + Delta-G solvation = -146.544896 kcal Electronic energy + Delta-G solvation = -23969.868462 eV Core-core repulsion = 20528.127927 eV Total energy + Delta-G solvation = -3441.740535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.69616 -38.90142 -37.67194 -35.23987 -34.48977 -32.83298 -31.81023 -31.43992 -27.83668 -27.39238 -25.82921 -24.33163 -21.84511 -21.13149 -20.73356 -19.48706 -18.62432 -17.17277 -16.87718 -16.21328 -15.66211 -14.83217 -14.75384 -14.47719 -14.42035 -14.11220 -14.02692 -13.79854 -13.35848 -13.03180 -12.28954 -12.15600 -11.93717 -11.82530 -11.62821 -11.52826 -11.47733 -11.20026 -11.15352 -10.95803 -10.69212 -10.57892 -10.43231 -10.33607 -10.30850 -10.06310 -9.73537 -9.65521 -9.56353 -9.02570 -8.36862 -7.86868 -6.43312 -3.87293 3.13435 3.24987 3.32304 3.45352 3.67967 4.09310 4.26112 4.69783 4.88277 4.93913 5.02854 5.09111 5.32850 5.38492 5.56102 5.60554 5.70250 5.75670 5.80048 5.82368 5.85313 5.96377 6.04885 6.05828 6.11492 6.21726 6.27198 6.31718 6.42520 6.46827 6.49516 6.52815 6.59922 6.66422 6.91932 6.97207 7.48477 7.56172 8.02573 8.39676 9.02817 9.12413 9.34041 9.89171 10.65839 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020976 B = 0.005587 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.513939 B = 5010.716609 C = 6067.628742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.066 0.934 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.058 4.058 9 H 0.075 0.925 10 C -0.134 4.134 11 C 0.465 3.535 12 O -0.571 6.571 13 N -0.437 5.437 14 C -0.302 4.302 15 H 0.107 0.893 16 C 0.027 3.973 17 N -0.885 5.885 18 Si 0.927 3.073 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.280 1.280 22 C 0.147 3.853 23 C 0.489 3.511 24 O -0.504 6.504 25 O -0.535 6.535 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 6.112 11.311 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.154 4.154 7 C -0.156 4.156 8 C -0.077 4.077 9 H 0.093 0.907 10 C -0.175 4.175 11 C 0.254 3.746 12 O -0.455 6.455 13 N -0.157 5.157 14 C -0.429 4.429 15 H 0.125 0.875 16 C -0.175 4.175 17 N -0.526 5.526 18 Si 0.754 3.246 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.206 1.206 22 C 0.020 3.980 23 C 0.329 3.671 24 O -0.389 6.389 25 O -0.346 6.346 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.146 0.854 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 1.524 5.412 11.214 12.544 hybrid contribution -0.748 -0.289 -0.979 1.265 sum 0.776 5.123 10.235 11.472 Atomic orbital electron populations 1.21903 0.95628 1.01912 1.01268 1.21188 0.95189 0.99399 0.94862 0.91517 1.21563 0.95520 1.00658 0.97164 1.21544 0.95736 1.00466 0.97830 1.21509 0.99576 0.99644 0.94675 1.21711 0.95006 0.99978 0.98905 1.20841 0.95614 0.99645 0.91623 0.90700 1.21754 1.01818 0.99552 0.94331 1.20113 0.84185 0.86451 0.83859 1.90479 1.43789 1.25449 1.85744 1.43493 1.46629 1.19967 1.05572 1.19757 1.18628 1.19904 0.84609 0.87493 1.25215 0.94581 0.97778 0.99927 1.69792 1.11940 1.43802 1.27044 0.85842 0.79526 0.78155 0.81046 1.19200 1.20949 1.20614 1.20663 0.84327 0.88234 1.04781 1.23897 0.89739 0.82470 0.70990 1.90614 1.80540 1.23091 1.44666 1.84530 1.20868 1.43275 1.85942 0.92719 0.93213 0.92366 0.92559 0.92101 0.92368 0.92723 0.92649 0.92159 0.89266 0.93198 0.90718 0.90246 0.92038 0.90602 0.85434 0.75255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.85 37.16 0.33 -1.58 16 2 C -0.09 -1.16 2.25 -90.62 -0.20 -1.36 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.31 5.20 -26.73 -0.14 -1.45 16 5 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 6 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 7 C -0.12 -1.91 4.95 -26.70 -0.13 -2.04 16 8 C -0.06 -0.96 1.37 -90.59 -0.12 -1.09 16 9 H 0.07 1.42 7.96 -51.93 -0.41 1.01 16 10 C -0.13 -2.47 3.57 -27.89 -0.10 -2.57 16 11 C 0.46 11.09 7.13 -10.99 -0.08 11.01 16 12 O -0.57 -15.28 13.61 5.55 0.08 -15.20 16 13 N -0.44 -10.92 2.18 -116.10 -0.25 -11.17 16 14 C -0.30 -8.27 9.35 -14.94 -0.14 -8.41 16 15 H 0.11 3.08 7.37 -52.48 -0.39 2.70 16 16 C 0.03 0.70 4.90 -17.47 -0.09 0.62 16 17 N -0.89 -23.29 9.24 55.50 0.51 -22.78 16 18 Si 0.93 20.58 29.60 -169.99 -5.03 15.54 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 22 C 0.15 3.17 4.97 -5.19 -0.03 3.14 16 23 C 0.49 10.77 5.85 36.01 0.21 10.98 16 24 O -0.50 -13.08 16.80 -18.75 -0.31 -13.39 16 25 O -0.54 -9.54 13.42 -39.25 -0.53 -10.07 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.78 6.32 -51.93 -0.33 0.45 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.74 5.96 -51.93 -0.31 1.43 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.20 7.42 -51.93 -0.39 0.82 16 38 H 0.08 1.47 5.54 -51.93 -0.29 1.18 16 39 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.08 1.33 6.69 -51.93 -0.35 0.98 16 41 H 0.13 2.88 6.35 -51.93 -0.33 2.55 16 42 H 0.39 5.36 9.10 45.56 0.41 5.78 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -32.12 328.81 -7.12 -39.25 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.73 Total: 8.87 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.80 Total: 4.00 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.26 Total: -33.95 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.77 Total: -38.66 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.12 -7.12 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736783378.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.298 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds