Wall clock time and date at job start Tue Mar 31 2020 05:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 O 1.20821 * 120.00113 * 239.99960 * 5 3 2 7 7 O 1.34225 * 120.00019 * 59.99602 * 5 3 2 8 8 C 1.45198 * 117.00260 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47585 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47233 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00092 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99898 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00474 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 119.99996 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.46878 * 89.99942 * 15 13 11 17 17 H 1.48500 * 109.47042 * 209.99956 * 15 13 11 18 18 H 1.48499 * 109.46991 * 330.00071 * 15 13 11 19 19 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 20 20 C 1.46763 * 124.35152 * 240.00011 * 19 3 2 21 21 C 1.54479 * 105.47947 * 197.01861 * 20 19 3 22 22 C 1.54634 * 101.76103 * 334.58640 * 21 20 19 23 23 C 1.34419 * 124.35122 * 59.70515 * 19 3 2 24 24 O 1.21281 * 124.94404 * 359.55952 * 23 19 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09007 * 109.46813 * 300.00494 * 8 7 5 31 31 H 1.08997 * 109.47174 * 59.99716 * 8 7 5 32 32 H 1.08997 * 109.46882 * 300.00322 * 9 8 7 33 33 H 1.09001 * 109.47003 * 60.00041 * 9 8 7 34 34 H 1.09007 * 109.46930 * 300.00356 * 10 9 8 35 35 H 1.08997 * 109.47117 * 59.99615 * 10 9 8 36 36 H 0.96991 * 120.00890 * 179.97438 * 14 13 11 37 37 H 1.09010 * 110.24628 * 316.02006 * 20 19 3 38 38 H 1.08997 * 110.24790 * 78.01329 * 20 19 3 39 39 H 1.09002 * 110.97256 * 92.69853 * 21 20 19 40 40 H 1.08999 * 110.97230 * 216.46777 * 21 20 19 41 41 H 1.09004 * 110.48615 * 143.47564 * 22 21 20 42 42 H 1.08998 * 110.48256 * 265.98507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 8 4.2191 1.9417 0.7444 7 8 4.1274 0.8934 -1.1987 8 6 5.5780 0.9306 -1.2509 9 6 6.0594 0.2609 -2.5395 10 6 7.5878 0.3007 -2.5948 11 6 8.0619 -0.3584 -3.8644 12 1 7.3448 -0.7647 -4.5622 13 6 9.4112 -0.4428 -4.1350 14 7 9.8250 -1.0175 -5.2432 15 14 10.6517 0.2607 -2.9283 16 1 11.0359 -0.7856 -1.9472 17 1 11.8579 0.7142 -3.6663 18 1 10.0472 1.4127 -2.2123 19 7 1.6524 2.0975 1.2517 20 6 0.8076 3.2948 1.3328 21 6 1.0290 3.8602 2.7532 22 6 1.4531 2.5945 3.5337 23 6 2.0202 1.6758 2.4739 24 8 2.7085 0.7020 2.6948 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.9157 1.9669 -1.2323 31 1 5.9863 0.4001 -0.3908 32 1 5.7216 -0.7753 -2.5585 33 1 5.6511 0.7919 -3.3994 34 1 7.9252 1.3371 -2.5760 35 1 7.9965 -0.2299 -1.7349 36 1 10.7742 -1.0766 -5.4338 37 1 1.1151 4.0249 0.5840 38 1 -0.2398 3.0277 1.1921 39 1 1.8244 4.6055 2.7569 40 1 0.1053 4.2757 3.1561 41 1 2.2129 2.8405 4.2756 42 1 0.5889 2.1341 4.0124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745692405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:58 Heat of formation + Delta-G solvation = -133.461152 kcal Electronic energy + Delta-G solvation = -22601.429773 eV Core-core repulsion = 19160.256592 eV Total energy + Delta-G solvation = -3441.173182 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.17113 -39.77173 -36.70644 -36.41927 -35.23654 -34.03495 -31.83040 -31.33236 -28.38911 -27.86680 -27.03656 -23.29690 -22.56022 -22.25437 -21.40306 -20.28819 -19.15559 -17.58377 -17.36760 -16.88617 -16.68448 -16.31621 -15.97127 -14.99074 -14.74275 -14.22311 -14.19307 -13.92265 -13.81745 -13.53356 -13.25267 -12.94113 -12.87110 -12.73436 -12.32920 -12.15338 -11.93048 -11.84772 -11.53213 -11.39513 -11.24439 -11.03409 -10.93677 -10.51622 -10.40578 -10.00755 -9.84229 -9.79909 -9.72051 -9.24041 -9.03228 -8.55790 -6.06195 -4.05133 2.18572 2.29772 2.58585 3.04269 3.31281 3.38512 3.42445 4.02962 4.10134 4.42034 4.44119 4.52448 4.60430 4.67329 4.75743 5.00842 5.05246 5.12230 5.19254 5.27246 5.32740 5.41217 5.46089 5.48313 5.53234 5.60034 5.70480 5.78203 5.88823 5.98846 6.17065 6.37658 6.40772 6.69093 6.82438 6.84188 7.22617 7.33892 7.73316 7.86008 8.03815 8.50679 8.98023 9.55488 11.06987 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.003181 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.565226 B = 8798.808703 C = 9284.523677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.172 3.828 4 H 0.125 0.875 5 C 0.445 3.555 6 O -0.494 6.494 7 O -0.354 6.354 8 C 0.067 3.933 9 C -0.100 4.100 10 C -0.011 4.011 11 C -0.521 4.521 12 H 0.074 0.926 13 C 0.068 3.932 14 N -0.902 5.902 15 Si 0.879 3.121 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.265 1.265 19 N -0.611 5.611 20 C 0.104 3.896 21 C -0.131 4.131 22 C -0.153 4.153 23 C 0.525 3.475 24 O -0.514 6.514 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.018 0.982 35 H 0.015 0.985 36 H 0.264 0.736 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.102 0.898 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.393 10.024 14.854 30.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.176 4.176 3 C 0.067 3.933 4 H 0.143 0.857 5 C 0.285 3.715 6 O -0.380 6.380 7 O -0.270 6.270 8 C -0.006 4.006 9 C -0.138 4.138 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.092 0.908 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.706 3.294 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.190 1.190 19 N -0.347 5.347 20 C -0.018 4.018 21 C -0.169 4.169 22 C -0.194 4.194 23 C 0.313 3.687 24 O -0.388 6.388 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.102 0.898 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.578 9.564 15.054 29.564 hybrid contribution 0.997 0.487 0.538 1.233 sum -22.582 10.051 15.593 29.225 Atomic orbital electron populations 1.21702 0.94393 1.02285 1.01729 1.21915 0.97086 0.93372 1.05213 1.20444 0.88306 0.96865 0.87666 0.85724 1.23812 0.91994 0.75533 0.80141 1.90662 1.65394 1.41947 1.40045 1.86465 1.25799 1.72147 1.42624 1.23492 0.74080 1.01764 1.01227 1.21552 0.98420 1.00381 0.93437 1.19522 0.90111 0.97217 0.97978 1.21054 0.92901 1.37724 1.04227 0.90772 1.25010 0.98462 0.94716 0.95192 1.69901 1.15310 1.44143 1.24711 0.86789 0.80946 0.80165 0.81482 1.20169 1.21265 1.19011 1.48045 1.51584 1.29897 1.05140 1.22138 0.94646 0.86388 0.98650 1.22589 1.03199 0.97206 0.93861 1.22306 1.03165 0.95895 0.97988 1.20826 0.78905 0.84992 0.84016 1.90736 1.36745 1.27837 1.83502 0.91993 0.92371 0.92812 0.89724 0.88938 0.91687 0.91546 0.91496 0.91529 0.96323 0.96700 0.92643 0.90246 0.90620 0.89814 0.89043 0.87962 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.80 37.16 0.36 -0.70 16 2 C -0.14 -1.44 5.32 -26.73 -0.14 -1.58 16 3 C 0.17 1.90 2.78 -69.08 -0.19 1.71 16 4 H 0.13 0.99 8.07 -51.93 -0.42 0.57 16 5 C 0.45 7.05 6.96 36.01 0.25 7.30 16 6 O -0.49 -9.41 14.67 -23.98 -0.35 -9.76 16 7 O -0.35 -5.94 10.03 -39.24 -0.39 -6.33 16 8 C 0.07 1.25 5.47 37.16 0.20 1.45 16 9 C -0.10 -2.05 5.53 -26.73 -0.15 -2.20 16 10 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 11 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 12 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 15 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 19 N -0.61 -6.19 2.07 -166.16 -0.34 -6.53 16 20 C 0.10 0.60 7.30 -3.12 -0.02 0.57 16 21 C -0.13 -0.64 7.18 -25.10 -0.18 -0.82 16 22 C -0.15 -1.15 6.86 -26.74 -0.18 -1.33 16 23 C 0.52 6.53 6.68 -10.86 -0.07 6.46 16 24 O -0.51 -8.87 15.36 -8.58 -0.13 -9.00 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.39 7.75 -51.93 -0.40 -0.02 16 28 H 0.08 1.12 6.60 -51.93 -0.34 0.77 16 29 H 0.09 0.96 7.99 -51.93 -0.42 0.55 16 30 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 35 H 0.01 0.36 7.57 -51.93 -0.39 -0.04 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 346.54 15.07 5.22 5.22 Total: -1.00 -36.26 346.54 -7.57 -43.82 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -7.00 Total: -4.57 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.67 Total: -2.99 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.43 Total: -33.80 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.88 Total: -25.09 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.26 -7.57 -43.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745692405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.640 kcal (2) G-P(sol) polarization free energy of solvation -36.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds