Wall clock time and date at job start Tue Mar 31 2020 05:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 O 1.20821 * 120.00113 * 239.99960 * 5 3 2 7 7 O 1.34225 * 120.00019 * 59.99602 * 5 3 2 8 8 C 1.45198 * 117.00260 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47585 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47525 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47233 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00092 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99898 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00474 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 119.99996 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.46878 * 89.99942 * 15 13 11 17 17 H 1.48500 * 109.47042 * 209.99956 * 15 13 11 18 18 H 1.48499 * 109.46991 * 330.00071 * 15 13 11 19 19 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 20 20 C 1.46763 * 124.35152 * 240.00011 * 19 3 2 21 21 C 1.54479 * 105.47947 * 197.01861 * 20 19 3 22 22 C 1.54634 * 101.76103 * 334.58640 * 21 20 19 23 23 C 1.34419 * 124.35122 * 59.70515 * 19 3 2 24 24 O 1.21281 * 124.94404 * 359.55952 * 23 19 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 30 30 H 1.09007 * 109.46813 * 300.00494 * 8 7 5 31 31 H 1.08997 * 109.47174 * 59.99716 * 8 7 5 32 32 H 1.08997 * 109.46882 * 300.00322 * 9 8 7 33 33 H 1.09001 * 109.47003 * 60.00041 * 9 8 7 34 34 H 1.09007 * 109.46930 * 300.00356 * 10 9 8 35 35 H 1.08997 * 109.47117 * 59.99615 * 10 9 8 36 36 H 0.96991 * 120.00890 * 179.97438 * 14 13 11 37 37 H 1.09010 * 110.24628 * 316.02006 * 20 19 3 38 38 H 1.08997 * 110.24790 * 78.01329 * 20 19 3 39 39 H 1.09002 * 110.97256 * 92.69853 * 21 20 19 40 40 H 1.08999 * 110.97230 * 216.46777 * 21 20 19 41 41 H 1.09004 * 110.48615 * 143.47564 * 22 21 20 42 42 H 1.08998 * 110.48256 * 265.98507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 8 4.2191 1.9417 0.7444 7 8 4.1274 0.8934 -1.1987 8 6 5.5780 0.9306 -1.2509 9 6 6.0594 0.2609 -2.5395 10 6 7.5878 0.3007 -2.5948 11 6 8.0619 -0.3584 -3.8644 12 1 7.3448 -0.7647 -4.5622 13 6 9.4112 -0.4428 -4.1350 14 7 9.8250 -1.0175 -5.2432 15 14 10.6517 0.2607 -2.9283 16 1 11.0359 -0.7856 -1.9472 17 1 11.8579 0.7142 -3.6663 18 1 10.0472 1.4127 -2.2123 19 7 1.6524 2.0975 1.2517 20 6 0.8076 3.2948 1.3328 21 6 1.0290 3.8602 2.7532 22 6 1.4531 2.5945 3.5337 23 6 2.0202 1.6758 2.4739 24 8 2.7085 0.7020 2.6948 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 5.9157 1.9669 -1.2323 31 1 5.9863 0.4001 -0.3908 32 1 5.7216 -0.7753 -2.5585 33 1 5.6511 0.7919 -3.3994 34 1 7.9252 1.3371 -2.5760 35 1 7.9965 -0.2299 -1.7349 36 1 10.7742 -1.0766 -5.4338 37 1 1.1151 4.0249 0.5840 38 1 -0.2398 3.0277 1.1921 39 1 1.8244 4.6055 2.7569 40 1 0.1053 4.2757 3.1561 41 1 2.2129 2.8405 4.2756 42 1 0.5889 2.1341 4.0124 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745692405.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:57 Heat of formation + Delta-G solvation = -155.971470 kcal Electronic energy + Delta-G solvation = -22602.405894 eV Core-core repulsion = 19160.256592 eV Total energy + Delta-G solvation = -3442.149302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16322 -40.88259 -37.94452 -37.48034 -36.11270 -35.86408 -33.89267 -31.98024 -29.84774 -28.50583 -28.29432 -25.02317 -23.39588 -22.75604 -22.61487 -22.11898 -20.12939 -19.07222 -18.71644 -18.18149 -17.75166 -17.42745 -17.11567 -16.32218 -15.91951 -15.72054 -15.36101 -14.88216 -14.76241 -14.63779 -14.46157 -14.16484 -13.88952 -13.84212 -13.60309 -13.34692 -13.06382 -12.89243 -12.63970 -12.44419 -12.21183 -12.14543 -12.06870 -11.97434 -11.85552 -11.79800 -11.47927 -11.45637 -11.39486 -10.80782 -10.74768 -9.84397 -8.33254 -6.38167 1.03353 1.21705 1.34077 1.34778 1.46761 1.74849 2.04867 2.32522 3.01622 3.34040 3.53827 3.62572 3.74802 3.87936 3.92730 3.96882 4.08124 4.17051 4.29635 4.35222 4.41829 4.64959 4.67674 4.68033 4.70416 4.76981 4.87777 4.91315 5.06114 5.09423 5.10319 5.23891 5.25837 5.33921 5.43293 5.44137 5.47389 5.58600 6.08367 6.22575 6.58746 6.69396 7.15076 7.26331 8.83247 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029203 B = 0.003181 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.565226 B = 8798.808703 C = 9284.523677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.134 4.134 3 C 0.174 3.826 4 H 0.166 0.834 5 C 0.439 3.561 6 O -0.530 6.530 7 O -0.354 6.354 8 C 0.077 3.923 9 C -0.089 4.089 10 C -0.009 4.009 11 C -0.534 4.534 12 H 0.038 0.962 13 C 0.008 3.992 14 N -0.948 5.948 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.249 1.249 19 N -0.609 5.609 20 C 0.096 3.904 21 C -0.120 4.120 22 C -0.149 4.149 23 C 0.505 3.495 24 O -0.578 6.578 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.026 0.974 35 H 0.019 0.981 36 H 0.268 0.732 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.128 0.872 41 H 0.095 0.905 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.583 12.258 16.014 33.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.172 4.172 3 C 0.068 3.932 4 H 0.183 0.817 5 C 0.281 3.719 6 O -0.419 6.419 7 O -0.270 6.270 8 C 0.003 3.997 9 C -0.127 4.127 10 C -0.047 4.047 11 C -0.572 4.572 12 H 0.057 0.943 13 C -0.190 4.190 14 N -0.588 5.588 15 Si 0.771 3.229 16 H -0.193 1.193 17 H -0.205 1.205 18 H -0.172 1.172 19 N -0.344 5.344 20 C -0.024 4.024 21 C -0.158 4.158 22 C -0.189 4.189 23 C 0.295 3.705 24 O -0.457 6.457 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.037 0.963 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.146 0.854 41 H 0.114 0.886 42 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -25.828 11.839 16.204 32.707 hybrid contribution 1.601 -0.241 0.125 1.624 sum -24.226 11.598 16.328 31.433 Atomic orbital electron populations 1.21657 0.91516 1.02931 1.03094 1.21874 0.99441 0.92606 1.03326 1.20708 0.84717 0.98055 0.89688 0.81687 1.24963 0.93953 0.74048 0.78907 1.90643 1.66596 1.43630 1.41007 1.86464 1.24551 1.72521 1.43447 1.23144 0.75500 1.01549 0.99503 1.21308 0.96086 1.00550 0.94756 1.19449 0.92683 0.96889 0.95674 1.21375 0.92664 1.37750 1.05379 0.94333 1.25963 1.00781 0.95100 0.97127 1.70040 1.16086 1.45771 1.26890 0.85699 0.78170 0.79998 0.79060 1.19302 1.20509 1.17234 1.48292 1.51183 1.30792 1.04099 1.22553 0.95510 0.84897 0.99479 1.22650 1.04640 0.95574 0.92905 1.22365 1.03536 0.96247 0.96780 1.21796 0.78129 0.84709 0.85833 1.90692 1.39671 1.30657 1.84665 0.91828 0.89999 0.92286 0.93205 0.89314 0.91183 0.92424 0.91899 0.91195 0.95617 0.96257 0.92302 0.89025 0.87353 0.90475 0.85402 0.88629 0.85601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.80 71.98 0.71 -0.95 16 2 C -0.13 -2.70 5.32 30.60 0.16 -2.54 16 3 C 0.17 3.55 2.78 44.25 0.12 3.68 16 4 H 0.17 2.01 8.07 -2.39 -0.02 1.99 16 5 C 0.44 13.77 6.96 71.24 0.50 14.27 16 6 O -0.53 -20.43 14.67 26.98 0.40 -20.03 16 7 O -0.35 -11.74 10.03 -51.37 -0.52 -12.25 16 8 C 0.08 2.81 5.47 71.98 0.39 3.21 16 9 C -0.09 -3.65 5.53 30.59 0.17 -3.48 16 10 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 11 C -0.53 -31.35 9.66 25.60 0.25 -31.11 16 12 H 0.04 2.46 7.99 -2.91 -0.02 2.44 16 13 C 0.01 0.45 5.47 84.66 0.46 0.91 16 14 N -0.95 -60.05 13.96 21.45 0.30 -59.75 16 15 Si 0.95 45.22 27.47 68.60 1.88 47.11 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 18 H -0.25 -11.12 6.54 99.48 0.65 -10.46 16 19 N -0.61 -11.18 2.07 -798.20 -1.66 -12.84 16 20 C 0.10 0.72 7.30 86.83 0.63 1.35 16 21 C -0.12 -0.75 7.18 31.65 0.23 -0.52 16 22 C -0.15 -1.97 6.86 30.59 0.21 -1.76 16 23 C 0.51 12.39 6.68 87.90 0.59 12.97 16 24 O -0.58 -20.88 15.36 10.49 0.16 -20.72 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.67 7.75 -2.38 -0.02 0.65 16 28 H 0.05 1.37 6.60 -2.39 -0.02 1.35 16 29 H 0.09 1.81 7.99 -2.39 -0.02 1.79 16 30 H 0.07 2.49 8.13 -2.38 -0.02 2.48 16 31 H 0.06 2.21 8.13 -2.39 -0.02 2.19 16 32 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 34 H 0.03 1.20 7.20 -2.38 -0.02 1.18 16 35 H 0.02 0.91 7.57 -2.39 -0.02 0.89 16 36 H 0.27 15.79 8.31 -92.72 -0.77 15.02 16 37 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 39 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -82.94 346.54 6.04 -76.90 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 0.93 Total: 5.89 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.54 Total: -4.30 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -1.36 Total: -72.59 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: 0.04 Total: -53.00 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 1.88 Total: 47.11 kcal Total: -82.94 6.04 -76.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745692405.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.070 kcal (2) G-P(sol) polarization free energy of solvation -82.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds