Wall clock time and date at job start Tue Mar 31 2020 06:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46861 * 2 1 4 4 C 1.46498 * 120.00139 * 269.99260 * 3 2 1 5 5 C 1.50703 * 109.47154 * 270.00553 * 4 3 2 6 6 H 1.07990 * 120.00246 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99911 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99553 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00238 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46862 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46889 * 119.99920 * 9 7 5 12 12 H 1.48492 * 109.47443 * 240.00322 * 9 7 5 13 13 C 1.34778 * 120.00051 * 89.99980 * 3 2 1 14 14 O 1.21282 * 119.99669 * 179.97438 * 13 3 2 15 15 C 1.50697 * 120.00086 * 359.97438 * 13 3 2 16 16 O 1.45197 * 109.47191 * 180.02562 * 15 13 3 17 17 C 1.34231 * 117.00287 * 180.02562 * 16 15 13 18 18 O 1.20828 * 119.99688 * 0.02562 * 17 16 15 19 19 C 1.50699 * 120.00288 * 180.02562 * 17 16 15 20 20 C 1.52994 * 112.85110 * 48.79800 * 19 17 16 21 21 C 1.53782 * 113.61498 * 180.02562 * 19 17 16 22 22 C 1.53781 * 87.08260 * 89.19810 * 21 19 17 23 23 C 1.53786 * 87.17350 * 25.39213 * 22 21 19 24 24 H 1.09005 * 109.46728 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47527 * 300.00339 * 1 2 3 26 26 H 1.08997 * 109.46707 * 60.00781 * 1 2 3 27 27 H 1.08995 * 109.47527 * 239.99661 * 2 1 3 28 28 H 1.09002 * 109.46807 * 119.99709 * 2 1 3 29 29 H 1.09000 * 109.46819 * 30.00012 * 4 3 2 30 30 H 1.08999 * 109.47585 * 150.00086 * 4 3 2 31 31 H 0.97004 * 119.99299 * 179.97438 * 8 7 5 32 32 H 1.09007 * 109.47251 * 60.00629 * 15 13 3 33 33 H 1.08995 * 109.47518 * 300.00517 * 15 13 3 34 34 H 1.08996 * 109.47659 * 191.19490 * 20 19 17 35 35 H 1.09003 * 109.47607 * 311.20386 * 20 19 17 36 36 H 1.09003 * 109.47085 * 71.19884 * 20 19 17 37 37 H 1.09001 * 113.61250 * 334.64628 * 21 19 17 38 38 H 1.08997 * 113.61225 * 203.74469 * 21 19 17 39 39 H 1.09002 * 113.61445 * 139.98212 * 22 21 19 40 40 H 1.09002 * 113.61408 * 270.79943 * 22 21 19 41 41 H 1.08993 * 113.61491 * 89.15923 * 23 22 21 42 42 H 1.09000 * 113.61138 * 220.06261 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7036 6 1 4.3429 1.2309 -1.0957 7 6 4.1493 2.3896 -2.8778 8 7 3.3493 3.1257 -3.6180 9 14 5.9138 2.0966 -3.4167 10 1 6.6013 1.2414 -2.4161 11 1 5.9217 1.4170 -4.7370 12 1 6.6207 3.3979 -3.5255 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1671 15 6 1.9912 1.3064 2.4723 16 8 2.3052 2.1962 3.5759 17 6 2.1342 1.7125 4.8163 18 8 1.7358 0.5829 4.9746 19 6 2.4392 2.5784 6.0114 20 6 1.8041 3.9671 5.9165 21 6 2.1925 1.8785 7.3583 22 6 3.6472 1.3861 7.2795 23 6 3.9318 2.6064 6.3879 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5137 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5819 1.6876 -2.0284 30 1 2.0956 3.1410 -1.1385 31 1 3.6755 3.5161 -4.4439 32 1 2.6212 0.4187 2.5303 33 1 0.9432 1.0125 2.5299 34 1 2.2145 4.6085 6.6964 35 1 2.0201 4.3995 4.9395 36 1 0.7251 3.8828 6.0460 37 1 1.4565 1.0762 7.3051 38 1 2.0092 2.5685 8.1818 39 1 4.1697 1.4127 8.2358 40 1 3.7581 0.4326 6.7630 41 1 4.2248 3.4958 6.9457 42 1 4.5979 2.3909 5.5525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750529622.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:57 Heat of formation + Delta-G solvation = -105.385013 kcal Electronic energy + Delta-G solvation = -22842.981599 eV Core-core repulsion = 19403.025890 eV Total energy + Delta-G solvation = -3439.955709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13288 -39.28096 -38.21128 -36.21195 -35.30543 -32.85318 -30.56812 -30.17316 -29.05884 -26.64136 -25.93900 -24.47591 -23.09249 -22.67973 -21.86060 -19.47736 -18.60489 -17.28367 -16.78463 -16.54494 -16.38031 -16.01251 -15.41186 -15.11252 -14.46793 -14.36163 -13.96462 -13.72356 -13.46678 -13.26899 -12.99298 -12.79245 -12.60082 -12.24958 -12.11922 -12.06993 -11.64316 -11.54676 -11.25712 -11.21128 -10.94426 -10.87106 -10.62479 -10.59887 -10.53942 -10.49843 -10.32304 -10.15855 -9.65494 -9.00226 -8.46166 -7.76275 -6.07071 -4.11870 2.11668 2.43211 3.24250 3.28824 3.36701 3.41042 3.84392 4.14252 4.26690 4.42315 4.54824 4.57117 4.79652 4.87043 5.12733 5.20357 5.21574 5.27748 5.35471 5.40098 5.46269 5.53031 5.56605 5.57645 5.69366 5.72128 5.81194 5.83723 5.98360 6.05147 6.12012 6.18008 6.39903 6.43817 6.98666 7.38510 7.46316 7.71795 7.89291 8.19225 8.28673 8.83625 8.98482 9.53285 11.01128 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.003932 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.778066 B = 7120.177407 C = 7735.268104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.102 3.898 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.507 3.493 14 O -0.519 6.519 15 C 0.048 3.952 16 O -0.323 6.323 17 C 0.485 3.515 18 O -0.509 6.509 19 C -0.085 4.085 20 C -0.137 4.137 21 C -0.118 4.118 22 C -0.145 4.145 23 C -0.121 4.121 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.171 -4.388 18.971 19.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.567 4.567 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.208 1.208 13 C 0.291 3.709 14 O -0.394 6.394 15 C -0.029 4.029 16 O -0.238 6.238 17 C 0.327 3.673 18 O -0.398 6.398 19 C -0.086 4.086 20 C -0.194 4.194 21 C -0.155 4.155 22 C -0.182 4.182 23 C -0.158 4.158 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.080 -4.002 18.775 19.625 hybrid contribution 0.839 -0.423 -0.566 1.097 sum -3.241 -4.425 18.209 19.017 Atomic orbital electron populations 1.22233 0.96531 1.01694 1.02407 1.21507 0.93759 0.83970 1.03012 1.48209 1.63829 1.13391 1.07136 1.19334 0.96487 0.93709 0.77564 1.21470 0.96855 1.32046 1.06314 0.92341 1.24936 0.97929 0.94858 0.96350 1.69946 1.35620 1.33388 1.14334 0.86428 0.84531 0.78087 0.78301 1.19797 1.20944 1.20827 1.19703 0.79725 0.87152 0.84279 1.90715 1.44463 1.17498 1.86734 1.22980 1.02650 0.92700 0.84559 1.86559 1.78261 1.44764 1.14195 1.23061 0.73722 0.86266 0.84227 1.90631 1.42568 1.19881 1.86686 1.21617 0.99943 0.96169 0.90884 1.21742 1.00584 0.93135 1.03983 1.22950 0.98251 1.00206 0.94088 1.22919 0.96487 0.98390 1.00440 1.23039 0.93018 0.99597 1.00149 0.91891 0.93154 0.91772 0.89403 0.91790 0.94630 0.93703 0.92725 0.88762 0.88808 0.91134 0.90493 0.92003 0.89957 0.88735 0.90779 0.89801 0.88334 0.90482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 10.24 37.16 0.38 -1.89 16 2 C 0.10 1.61 5.93 -4.04 -0.02 1.59 16 3 N -0.59 -12.47 2.46 -175.06 -0.43 -12.90 16 4 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 5 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.51 10.83 7.75 -10.99 -0.09 10.74 16 14 O -0.52 -13.42 16.08 -14.10 -0.23 -13.64 16 15 C 0.05 0.81 4.50 36.00 0.16 0.97 16 16 O -0.32 -5.53 9.38 -45.91 -0.43 -5.96 16 17 C 0.48 7.12 6.77 36.01 0.24 7.36 16 18 O -0.51 -8.11 15.50 -18.75 -0.29 -8.40 16 19 C -0.08 -0.95 1.33 -154.76 -0.21 -1.15 16 20 C -0.14 -1.36 9.14 37.15 0.34 -1.02 16 21 C -0.12 -1.07 7.02 -25.92 -0.18 -1.25 16 22 C -0.15 -1.30 7.73 -25.92 -0.20 -1.51 16 23 C -0.12 -1.17 7.23 -25.82 -0.19 -1.35 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.65 7.22 -51.93 -0.37 0.27 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 28 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 29 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.09 1.43 7.39 -51.92 -0.38 1.04 16 33 H 0.09 1.37 7.18 -51.93 -0.37 1.00 16 34 H 0.07 0.54 7.95 -51.93 -0.41 0.12 16 35 H 0.08 0.91 7.85 -51.93 -0.41 0.50 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.84 7.43 -51.93 -0.39 0.45 16 38 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.10 0.75 7.97 -51.93 -0.41 0.33 16 42 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -33.68 351.16 -7.38 -41.06 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.81 Total: -1.86 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -0.21 Total: 5.30 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.31 Total: -38.56 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.95 Total: -28.00 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.68 -7.38 -41.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750529622.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.323 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds