Wall clock time and date at job start Tue Mar 31 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.45200 * 109.47003 * 239.99742 * 2 1 3 5 5 C 1.34225 * 117.00048 * 89.99778 * 4 2 1 6 6 O 1.20823 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00276 * 180.02562 * 5 4 2 8 8 C 1.52999 * 112.84976 * 50.33456 * 7 5 4 9 9 C 1.53782 * 113.61310 * 279.14205 * 7 5 4 10 10 C 1.53959 * 87.02003 * 220.04645 * 9 7 5 11 11 C 1.53777 * 87.11225 * 25.36061 * 10 9 7 12 12 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 13 13 O 1.21274 * 120.00414 * 114.99469 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99517 * 12 2 1 15 15 C 1.46503 * 120.00522 * 0.02562 * 14 12 2 16 16 C 1.46508 * 120.00166 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46623 * 89.99969 * 16 14 12 18 18 H 1.08000 * 120.00374 * 0.02562 * 17 16 14 19 19 C 1.37874 * 119.99772 * 180.02562 * 17 16 14 20 20 N 1.31518 * 120.00305 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00042 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47445 * 120.00365 * 21 19 17 24 24 H 1.48506 * 109.47224 * 239.99775 * 21 19 17 25 25 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 28 28 H 1.08994 * 109.47177 * 69.66776 * 8 7 5 29 29 H 1.09003 * 109.47616 * 189.67174 * 8 7 5 30 30 H 1.09003 * 109.47460 * 309.66817 * 8 7 5 31 31 H 1.09001 * 113.61405 * 334.56127 * 9 7 5 32 32 H 1.08997 * 113.61740 * 105.47150 * 9 7 5 33 33 H 1.09005 * 113.53376 * 270.80887 * 10 9 7 34 34 H 1.08995 * 113.74609 * 139.93990 * 10 9 7 35 35 H 1.08999 * 113.61752 * 220.09424 * 11 10 9 36 36 H 1.09002 * 113.61724 * 89.18399 * 11 10 9 37 37 H 1.08992 * 109.47575 * 89.99119 * 15 14 12 38 38 H 1.08994 * 109.47305 * 210.00451 * 15 14 12 39 39 H 1.09007 * 109.46469 * 329.99619 * 15 14 12 40 40 H 1.08994 * 109.47263 * 210.00467 * 16 14 12 41 41 H 1.09002 * 109.46810 * 330.00361 * 16 14 12 42 42 H 0.96998 * 120.00457 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9982 1.2517 -2.2504 7 6 2.7182 -0.5774 -3.5495 8 6 1.9078 -1.8113 -3.9517 9 6 4.2386 -0.8072 -3.5645 10 6 4.2092 -0.3700 -5.0404 11 6 2.9342 0.4197 -4.7002 12 6 2.0324 -0.7104 1.2304 13 8 2.6529 -1.7467 1.1215 14 7 1.7920 -0.1941 2.4519 15 6 1.0419 1.0574 2.5837 16 6 2.2799 -0.8850 3.6483 17 6 3.6615 -0.3877 3.9870 18 1 4.1293 0.3676 3.3730 19 6 4.3285 -0.8971 5.0809 20 7 3.7592 -1.8173 5.8285 21 14 6.0408 -0.2803 5.5014 22 1 6.4538 0.7470 4.5117 23 1 6.0320 0.3169 6.8610 24 1 6.9984 -1.4148 5.4654 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.9141 -1.5032 -4.2767 29 1 2.4132 -2.3277 -4.7678 30 1 1.8189 -2.4820 -3.0971 31 1 4.7898 -0.1245 -2.9179 32 1 4.5241 -1.8495 -3.4226 33 1 4.0408 -1.1931 -5.7349 34 1 5.0499 0.2612 -5.3281 35 1 2.1681 0.3663 -5.4738 36 1 3.1281 1.4384 -4.3645 37 1 -0.0220 0.8363 2.6681 38 1 1.3747 1.5883 3.4755 39 1 1.2152 1.6789 1.7051 40 1 1.6073 -0.6859 4.4825 41 1 2.3161 -1.9578 3.4588 42 1 4.2285 -2.1760 6.5978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750534546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:09 Heat of formation + Delta-G solvation = -101.454358 kcal Electronic energy + Delta-G solvation = -23104.679430 eV Core-core repulsion = 19664.894167 eV Total energy + Delta-G solvation = -3439.785263 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.07013 -39.42099 -38.28583 -36.21378 -34.91287 -32.89191 -31.62077 -29.89108 -27.71555 -26.19642 -25.95401 -25.47783 -24.27372 -22.69226 -21.22560 -19.02251 -18.75516 -17.60134 -16.83306 -16.54086 -16.09111 -15.95542 -15.38004 -15.14561 -14.60919 -14.30541 -13.91269 -13.65291 -13.43980 -13.05659 -12.65491 -12.59983 -12.50371 -12.38364 -12.16115 -12.06652 -11.69658 -11.54076 -11.50786 -11.32738 -11.21129 -10.89970 -10.77514 -10.68360 -10.58319 -10.53822 -10.18205 -10.12766 -9.64136 -8.89450 -8.46116 -7.72958 -6.06920 -4.11820 2.20165 2.54443 3.26892 3.28898 3.36730 3.41512 3.88455 4.14509 4.26885 4.42769 4.51339 4.53117 4.72712 4.87433 5.02171 5.10666 5.20115 5.27807 5.32648 5.48023 5.50422 5.55677 5.59808 5.66181 5.66823 5.68254 5.79179 5.80362 5.85656 5.98999 6.00821 6.17771 6.21583 6.49711 6.98021 7.38248 7.46228 7.79129 7.89552 8.19260 8.29116 8.84449 8.99376 9.53400 11.01268 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.004187 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.419531 B = 6686.106636 C = 7373.053138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 H 0.104 0.896 4 O -0.321 6.321 5 C 0.474 3.526 6 O -0.512 6.512 7 C -0.082 4.082 8 C -0.128 4.128 9 C -0.121 4.121 10 C -0.139 4.139 11 C -0.117 4.117 12 C 0.508 3.492 13 O -0.519 6.519 14 N -0.596 5.596 15 C 0.076 3.924 16 C 0.246 3.754 17 C -0.528 4.528 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.282 1.282 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.036 0.964 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 4.271 -18.950 20.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 H 0.121 0.879 4 O -0.236 6.236 5 C 0.317 3.683 6 O -0.401 6.401 7 C -0.083 4.083 8 C -0.185 4.185 9 C -0.158 4.158 10 C -0.177 4.177 11 C -0.154 4.154 12 C 0.293 3.707 13 O -0.395 6.395 14 N -0.330 5.330 15 C -0.067 4.067 16 C 0.128 3.872 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.208 1.208 25 H 0.090 0.910 26 H 0.107 0.893 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.064 0.936 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.495 3.941 -18.768 19.949 hybrid contribution 0.848 0.593 0.539 1.167 sum -4.647 4.535 -18.229 19.351 Atomic orbital electron populations 1.22266 0.92448 1.03961 1.03938 1.22627 0.95699 0.97610 0.83177 0.87868 1.86630 1.76143 1.41372 1.19410 1.23629 0.73540 0.85754 0.85341 1.90611 1.48364 1.16702 1.84407 1.21947 0.97858 0.98403 0.90065 1.21609 0.99097 0.95092 1.02749 1.23001 0.92155 1.03361 0.97315 1.22861 0.98219 1.00229 0.96343 1.22999 0.98112 0.98605 0.95672 1.19775 0.81167 0.85942 0.83834 1.90699 1.39609 1.23401 1.85760 1.48073 1.54050 1.23930 1.06922 1.21839 0.95342 0.86767 1.02800 1.19354 0.94320 0.93800 0.79749 1.21468 1.01000 1.22974 1.11263 0.92384 1.24930 0.98218 0.94873 0.96019 1.69940 1.38034 1.28037 1.17290 0.86433 0.84133 0.78760 0.78052 1.19806 1.20901 1.20807 0.90988 0.89342 0.91403 0.91836 0.90975 0.90450 0.89434 0.89711 0.89604 0.90669 0.90527 0.88638 0.93130 0.90299 0.92388 0.94606 0.93642 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.27 37.16 0.34 -1.93 16 2 C 0.07 1.16 2.16 -27.88 -0.06 1.10 16 3 H 0.10 1.73 6.14 -51.93 -0.32 1.42 16 4 O -0.32 -5.60 9.11 -45.88 -0.42 -6.02 16 5 C 0.47 7.24 6.99 36.00 0.25 7.49 16 6 O -0.51 -8.56 15.13 -18.75 -0.28 -8.84 16 7 C -0.08 -0.94 1.32 -154.85 -0.20 -1.14 16 8 C -0.13 -1.22 9.01 37.16 0.33 -0.88 16 9 C -0.12 -1.28 7.21 -25.82 -0.19 -1.47 16 10 C -0.14 -1.12 7.74 -25.83 -0.20 -1.32 16 11 C -0.12 -1.11 6.99 -25.92 -0.18 -1.29 16 12 C 0.51 11.11 7.10 -10.99 -0.08 11.03 16 13 O -0.52 -13.66 16.09 -14.05 -0.23 -13.89 16 14 N -0.60 -12.80 2.86 -182.95 -0.52 -13.33 16 15 C 0.08 1.21 8.92 59.85 0.53 1.74 16 16 C 0.25 6.46 5.16 -5.19 -0.03 6.43 16 17 C -0.53 -15.09 9.39 -34.44 -0.32 -15.41 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 21 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.09 1.05 5.12 -51.93 -0.27 0.79 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.53 7.34 -51.93 -0.38 0.15 16 30 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 31 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 32 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 33 H 0.09 0.56 7.64 -51.93 -0.40 0.16 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.10 1.03 7.45 -51.93 -0.39 0.64 16 37 H 0.05 0.66 7.02 -51.93 -0.36 0.30 16 38 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 39 H 0.06 0.79 6.07 -51.92 -0.32 0.47 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.52 16 41 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 345.31 15.07 5.20 5.20 Total: -1.00 -34.36 345.31 -6.99 -41.35 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -6.56 Total: -1.64 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 0.11 Total: 6.03 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.21 Total: -39.14 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.93 Total: -28.75 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.36 -6.99 -41.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750534546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.104 kcal (2) G-P(sol) polarization free energy of solvation -34.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds