Wall clock time and date at job start Tue Mar 31 2020 06:24:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 O 1.45200 * 109.47003 * 239.99742 * 2 1 3 5 5 C 1.34225 * 117.00048 * 89.99778 * 4 2 1 6 6 O 1.20823 * 120.00140 * 0.02562 * 5 4 2 7 7 C 1.50698 * 120.00276 * 180.02562 * 5 4 2 8 8 C 1.52999 * 112.84976 * 50.33456 * 7 5 4 9 9 C 1.53782 * 113.61310 * 279.14205 * 7 5 4 10 10 C 1.53959 * 87.02003 * 220.04645 * 9 7 5 11 11 C 1.53777 * 87.11225 * 25.36061 * 10 9 7 12 12 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 13 13 O 1.21274 * 120.00414 * 114.99469 * 12 2 1 14 14 N 1.34776 * 119.99626 * 294.99517 * 12 2 1 15 15 C 1.46503 * 120.00522 * 0.02562 * 14 12 2 16 16 C 1.46508 * 120.00166 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.46623 * 89.99969 * 16 14 12 18 18 H 1.08000 * 120.00374 * 0.02562 * 17 16 14 19 19 C 1.37874 * 119.99772 * 180.02562 * 17 16 14 20 20 N 1.31518 * 120.00305 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00042 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47328 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47445 * 120.00365 * 21 19 17 24 24 H 1.48506 * 109.47224 * 239.99775 * 21 19 17 25 25 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 28 28 H 1.08994 * 109.47177 * 69.66776 * 8 7 5 29 29 H 1.09003 * 109.47616 * 189.67174 * 8 7 5 30 30 H 1.09003 * 109.47460 * 309.66817 * 8 7 5 31 31 H 1.09001 * 113.61405 * 334.56127 * 9 7 5 32 32 H 1.08997 * 113.61740 * 105.47150 * 9 7 5 33 33 H 1.09005 * 113.53376 * 270.80887 * 10 9 7 34 34 H 1.08995 * 113.74609 * 139.93990 * 10 9 7 35 35 H 1.08999 * 113.61752 * 220.09424 * 11 10 9 36 36 H 1.09002 * 113.61724 * 89.18399 * 11 10 9 37 37 H 1.08992 * 109.47575 * 89.99119 * 15 14 12 38 38 H 1.08994 * 109.47305 * 210.00451 * 15 14 12 39 39 H 1.09007 * 109.46469 * 329.99619 * 15 14 12 40 40 H 1.08994 * 109.47263 * 210.00467 * 16 14 12 41 41 H 1.09002 * 109.46810 * 330.00361 * 16 14 12 42 42 H 0.96998 * 120.00457 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2171 0.0639 -2.2811 6 8 1.9982 1.2517 -2.2504 7 6 2.7182 -0.5774 -3.5495 8 6 1.9078 -1.8113 -3.9517 9 6 4.2386 -0.8072 -3.5645 10 6 4.2092 -0.3700 -5.0404 11 6 2.9342 0.4197 -4.7002 12 6 2.0324 -0.7104 1.2304 13 8 2.6529 -1.7467 1.1215 14 7 1.7920 -0.1941 2.4519 15 6 1.0419 1.0574 2.5837 16 6 2.2799 -0.8850 3.6483 17 6 3.6615 -0.3877 3.9870 18 1 4.1293 0.3676 3.3730 19 6 4.3285 -0.8971 5.0809 20 7 3.7592 -1.8173 5.8285 21 14 6.0408 -0.2803 5.5014 22 1 6.4538 0.7470 4.5117 23 1 6.0320 0.3169 6.8610 24 1 6.9984 -1.4148 5.4654 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.9141 -1.5032 -4.2767 29 1 2.4132 -2.3277 -4.7678 30 1 1.8189 -2.4820 -3.0971 31 1 4.7898 -0.1245 -2.9179 32 1 4.5241 -1.8495 -3.4226 33 1 4.0408 -1.1931 -5.7349 34 1 5.0499 0.2612 -5.3281 35 1 2.1681 0.3663 -5.4738 36 1 3.1281 1.4384 -4.3645 37 1 -0.0220 0.8363 2.6681 38 1 1.3747 1.5883 3.4755 39 1 1.2152 1.6789 1.7051 40 1 1.6073 -0.6859 4.4825 41 1 2.3161 -1.9578 3.4588 42 1 4.2285 -2.1760 6.5978 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750534546.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:09 Heat of formation + Delta-G solvation = -122.099486 kcal Electronic energy + Delta-G solvation = -23105.574670 eV Core-core repulsion = 19664.894167 eV Total energy + Delta-G solvation = -3440.680503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23693 -40.87823 -39.46852 -37.51856 -36.73155 -34.92997 -33.09167 -30.70629 -29.62195 -27.70283 -26.77773 -26.47651 -25.84493 -24.28665 -22.42718 -20.47520 -19.93896 -18.78536 -18.62479 -18.20724 -17.51294 -17.22022 -17.04038 -16.47083 -16.07283 -15.78506 -15.04872 -14.96242 -14.53774 -14.45621 -14.22851 -13.77340 -13.64075 -13.53025 -13.42875 -13.27381 -13.24008 -13.05940 -12.84427 -12.65427 -12.55389 -12.32744 -12.28779 -12.25126 -11.94093 -11.72035 -11.51665 -11.33132 -11.17228 -10.67680 -10.64274 -9.55275 -8.26360 -6.41087 1.01673 1.28777 1.34601 1.37034 1.48608 1.58687 2.29361 2.41694 3.03615 3.29911 3.36745 3.43230 3.59866 3.71766 3.80396 3.80956 3.86831 4.29233 4.45366 4.52568 4.57216 4.62551 4.66102 4.69855 4.81790 4.82344 4.86529 4.93056 5.01314 5.02268 5.05150 5.10620 5.16488 5.23301 5.32298 5.45896 5.48353 5.75256 6.00675 6.49545 6.62977 6.67542 7.17157 7.32933 8.81254 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020592 B = 0.004187 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.419531 B = 6686.106636 C = 7373.053138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.075 3.925 3 H 0.110 0.890 4 O -0.340 6.340 5 C 0.469 3.531 6 O -0.530 6.530 7 C -0.090 4.090 8 C -0.124 4.124 9 C -0.132 4.132 10 C -0.120 4.120 11 C -0.113 4.113 12 C 0.499 3.501 13 O -0.578 6.578 14 N -0.599 5.599 15 C 0.069 3.931 16 C 0.260 3.740 17 C -0.548 4.548 18 H 0.050 0.950 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.967 3.033 22 H -0.270 1.270 23 H -0.266 1.266 24 H -0.280 1.280 25 H 0.068 0.932 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.034 0.966 41 H 0.001 0.999 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 5.593 -20.700 22.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.017 3.983 3 H 0.128 0.872 4 O -0.256 6.256 5 C 0.314 3.686 6 O -0.419 6.419 7 C -0.091 4.091 8 C -0.181 4.181 9 C -0.170 4.170 10 C -0.157 4.157 11 C -0.150 4.150 12 C 0.286 3.714 13 O -0.457 6.457 14 N -0.331 5.331 15 C -0.073 4.073 16 C 0.139 3.861 17 C -0.586 4.586 18 H 0.068 0.932 19 C -0.188 4.188 20 N -0.565 5.565 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.191 1.191 24 H -0.206 1.206 25 H 0.087 0.913 26 H 0.126 0.874 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.020 0.980 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.763 5.311 -20.523 21.969 hybrid contribution 0.899 0.180 1.094 1.427 sum -4.864 5.491 -19.430 20.768 Atomic orbital electron populations 1.22271 0.89201 1.04418 1.05803 1.22537 0.97929 0.96535 0.81278 0.87250 1.86653 1.76615 1.42363 1.19966 1.24520 0.72785 0.85720 0.85609 1.90585 1.49262 1.17416 1.84672 1.22320 0.98247 0.99807 0.88692 1.21627 0.99796 0.93914 1.02802 1.23084 0.91455 1.03130 0.99322 1.22851 0.97703 1.00620 0.94570 1.23004 0.99520 0.97367 0.95094 1.20640 0.80130 0.85431 0.85163 1.90656 1.42239 1.26094 1.86758 1.48059 1.54078 1.25338 1.05668 1.22187 0.96549 0.84553 1.04009 1.18857 0.93901 0.91809 0.81505 1.21709 1.02224 1.23141 1.11552 0.93163 1.25820 1.02347 0.94881 0.95790 1.70041 1.39789 1.28889 1.17747 0.85377 0.78823 0.78212 0.78443 1.19478 1.19093 1.20595 0.91283 0.87371 0.89518 0.90696 0.88295 0.92432 0.91406 0.89523 0.87143 0.89663 0.88430 0.90245 0.89609 0.90580 0.89703 0.94769 0.98045 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.27 71.98 0.67 -3.35 16 2 C 0.08 2.58 2.16 29.85 0.06 2.64 16 3 H 0.11 3.58 6.14 -2.39 -0.01 3.57 16 4 O -0.34 -12.03 9.11 -45.03 -0.41 -12.44 16 5 C 0.47 14.18 6.99 71.24 0.50 14.68 16 6 O -0.53 -17.35 15.13 21.97 0.33 -17.02 16 7 C -0.09 -1.95 1.32 -52.40 -0.07 -2.02 16 8 C -0.12 -2.14 9.01 71.98 0.65 -1.49 16 9 C -0.13 -2.72 7.21 31.18 0.22 -2.49 16 10 C -0.12 -1.62 7.74 31.18 0.24 -1.38 16 11 C -0.11 -1.90 6.99 31.12 0.22 -1.68 16 12 C 0.50 22.40 7.10 87.66 0.62 23.02 16 13 O -0.58 -32.02 16.09 15.74 0.25 -31.77 16 14 N -0.60 -26.09 2.86 -851.13 -2.43 -28.53 16 15 C 0.07 2.06 8.92 127.77 1.14 3.20 16 16 C 0.26 14.15 5.16 85.63 0.44 14.59 16 17 C -0.55 -32.07 9.39 25.60 0.24 -31.83 16 18 H 0.05 2.95 7.81 -2.91 -0.02 2.92 16 19 C 0.01 0.64 5.46 84.65 0.46 1.10 16 20 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 21 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 24 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.11 2.25 5.12 -2.39 -0.01 2.24 16 27 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.16 7.34 -2.39 -0.02 1.14 16 30 H 0.06 1.23 7.92 -2.39 -0.02 1.21 16 31 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 32 H 0.09 1.71 8.10 -2.39 -0.02 1.69 16 33 H 0.11 0.99 7.64 -2.38 -0.02 0.97 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.08 1.61 7.45 -2.39 -0.02 1.60 16 37 H 0.09 2.00 7.02 -2.39 -0.02 1.99 16 38 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 39 H 0.08 2.11 6.07 -2.38 -0.01 2.09 16 40 H 0.03 1.84 8.07 -2.39 -0.02 1.83 16 41 H 0.00 0.09 7.42 -2.39 -0.02 0.07 16 42 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -77.93 345.31 6.46 -71.48 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 1.01 Total: 11.56 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 5.40 Total: 14.99 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.15 Total: -84.17 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: 0.18 Total: -61.23 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -77.93 6.46 -71.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750534546.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.624 kcal (2) G-P(sol) polarization free energy of solvation -77.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds