Wall clock time and date at job start Tue Mar 31 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46929 * 2 1 4 4 O 1.45195 * 109.47370 * 120.00344 * 2 1 3 5 5 C 1.34234 * 116.99963 * 270.00090 * 4 2 1 6 6 O 1.20821 * 119.99795 * 359.97438 * 5 4 2 7 7 C 1.50699 * 119.99776 * 179.72458 * 5 4 2 8 8 C 1.53008 * 112.85028 * 50.60651 * 7 5 4 9 9 C 1.53778 * 113.61461 * 279.41402 * 7 5 4 10 10 C 1.53952 * 87.02012 * 220.05005 * 9 7 5 11 11 C 1.53775 * 113.61313 * 181.80392 * 7 5 4 12 12 C 1.50700 * 109.47243 * 240.00589 * 2 1 3 13 13 O 1.21280 * 119.99903 * 248.56710 * 12 2 1 14 14 N 1.34774 * 120.00192 * 68.56167 * 12 2 1 15 15 C 1.46503 * 120.00070 * 4.59016 * 14 12 2 16 16 C 1.46500 * 120.00144 * 184.58403 * 14 12 2 17 17 C 1.50707 * 109.46758 * 90.00498 * 16 14 12 18 18 H 1.07995 * 120.00367 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99633 * 180.02562 * 17 16 14 20 20 N 1.31516 * 120.00326 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99720 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47057 * 59.99849 * 21 19 17 23 23 H 1.48497 * 109.47118 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47214 * 299.99802 * 21 19 17 25 25 H 1.08996 * 109.46996 * 307.14648 * 1 2 3 26 26 H 1.09003 * 109.46963 * 67.14932 * 1 2 3 27 27 H 1.08995 * 109.46906 * 187.14701 * 1 2 3 28 28 H 1.09002 * 109.46687 * 69.66929 * 8 7 5 29 29 H 1.09005 * 109.46958 * 189.66588 * 8 7 5 30 30 H 1.08994 * 109.47114 * 309.66417 * 8 7 5 31 31 H 1.09004 * 113.61108 * 334.56403 * 9 7 5 32 32 H 1.08990 * 113.61980 * 105.47091 * 9 7 5 33 33 H 1.08996 * 113.53845 * 270.81000 * 10 9 7 34 34 H 1.09002 * 113.74882 * 139.93825 * 10 9 7 35 35 H 1.09008 * 113.61648 * 254.53013 * 11 7 5 36 36 H 1.09001 * 113.61774 * 25.43258 * 11 7 5 37 37 H 1.08997 * 109.47219 * 86.11689 * 15 14 12 38 38 H 1.08997 * 109.46939 * 206.11533 * 15 14 12 39 39 H 1.09000 * 109.46742 * 326.11338 * 15 14 12 40 40 H 1.09004 * 109.47495 * 210.00091 * 16 14 12 41 41 H 1.08994 * 109.47543 * 330.00625 * 16 14 12 42 42 H 0.96996 * 119.99862 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0141 -0.6845 1.1855 5 6 2.2172 0.0639 2.2811 6 8 1.9982 1.2517 2.2503 7 6 2.7130 -0.5783 3.5510 8 6 3.9509 -1.4504 3.3317 9 6 1.6067 -1.2723 4.3630 10 6 2.2894 -0.7093 5.6228 11 6 2.8524 0.4051 4.7249 12 6 2.0324 -0.7103 -1.2305 13 8 2.5964 -1.7789 -1.1261 14 7 1.8548 -0.1581 -2.4471 15 6 1.2644 1.1774 -2.5663 16 6 2.2523 -0.8932 -3.6503 17 6 1.0933 -1.7246 -4.1368 18 1 0.1544 -1.7067 -3.6034 19 6 1.2316 -2.5079 -5.2631 20 7 2.3747 -2.5293 -5.9130 21 14 -0.2048 -3.5389 -5.8657 22 1 -1.3518 -2.6513 -6.1847 23 1 0.1984 -4.2850 -7.0847 24 1 -0.6028 -4.5006 -4.8064 25 1 -0.3633 0.6205 0.8191 26 1 -0.3633 0.3991 -0.9470 27 1 -0.3633 -1.0196 0.1279 28 1 4.8052 -0.8158 3.0961 29 1 4.1598 -2.0192 4.2378 30 1 3.7696 -2.1374 2.5052 31 1 0.6123 -0.8625 4.1852 32 1 1.6350 -2.3599 4.2990 33 1 3.0549 -1.3672 6.0339 34 1 1.5900 -0.3501 6.3777 35 1 3.8850 0.6696 4.9528 36 1 2.1993 1.2743 4.6464 37 1 2.0471 1.9303 -2.4732 38 1 0.7800 1.2751 -3.5378 39 1 0.5269 1.3204 -1.7765 40 1 2.5446 -0.1872 -4.4276 41 1 3.0940 -1.5450 -3.4165 42 1 2.4719 -3.0801 -6.7054 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750534549.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:12 Heat of formation + Delta-G solvation = -99.033108 kcal Electronic energy + Delta-G solvation = -23071.112065 eV Core-core repulsion = 19631.431796 eV Total energy + Delta-G solvation = -3439.680270 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08938 -39.42883 -38.30123 -36.22827 -34.90305 -32.87489 -31.65395 -29.85599 -27.72992 -26.21764 -25.99657 -25.49310 -24.18639 -22.71143 -21.27180 -19.02395 -18.74734 -17.61448 -16.84038 -16.54436 -16.09818 -15.92024 -15.31743 -15.25269 -14.65291 -14.40970 -13.85988 -13.71650 -13.42580 -12.91659 -12.77411 -12.61766 -12.49251 -12.39224 -12.15692 -12.06572 -11.61473 -11.54059 -11.44802 -11.31855 -11.20951 -10.90420 -10.80984 -10.67970 -10.58940 -10.54234 -10.19171 -10.13984 -9.67865 -8.89595 -8.45814 -7.71944 -6.06892 -4.12347 2.17271 2.55063 3.24899 3.30632 3.35217 3.38966 3.89099 4.12169 4.23265 4.41758 4.47377 4.48594 4.75377 4.87877 5.03502 5.12978 5.19107 5.27552 5.31898 5.44746 5.45868 5.54790 5.57683 5.62712 5.69118 5.74957 5.76254 5.80481 5.86952 6.01794 6.07273 6.17211 6.27784 6.49047 6.98878 7.39474 7.46559 7.77643 7.89173 8.18900 8.29706 8.83588 8.98801 9.52727 11.01196 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028938 B = 0.003719 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.360460 B = 7527.140054 C = 7731.970498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.102 0.898 4 O -0.320 6.320 5 C 0.474 3.526 6 O -0.513 6.513 7 C -0.081 4.081 8 C -0.131 4.131 9 C -0.121 4.121 10 C -0.139 4.139 11 C -0.117 4.117 12 C 0.510 3.490 13 O -0.521 6.521 14 N -0.596 5.596 15 C 0.067 3.933 16 C 0.246 3.754 17 C -0.530 4.530 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.360 6.821 19.520 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.010 3.990 3 H 0.119 0.881 4 O -0.235 6.235 5 C 0.317 3.683 6 O -0.401 6.401 7 C -0.082 4.082 8 C -0.188 4.188 9 C -0.158 4.158 10 C -0.176 4.176 11 C -0.155 4.155 12 C 0.294 3.706 13 O -0.396 6.396 14 N -0.330 5.330 15 C -0.076 4.076 16 C 0.128 3.872 17 C -0.569 4.569 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.086 0.914 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.025 6.509 19.329 20.421 hybrid contribution -0.884 -0.311 -0.654 1.142 sum -1.909 6.198 18.675 19.769 Atomic orbital electron populations 1.22288 0.92340 1.04105 1.03950 1.22629 0.95901 0.97391 0.83072 0.88072 1.86650 1.76097 1.41380 1.19396 1.23641 0.73786 0.85679 0.85209 1.90608 1.48646 1.16639 1.84225 1.21946 0.98872 0.98914 0.88468 1.21633 0.94403 0.99266 1.03467 1.22990 0.97036 1.01191 0.94586 1.22856 1.00360 0.98075 0.96333 1.23004 1.02718 0.97094 0.92649 1.19774 0.80867 0.86139 0.83826 1.90691 1.41665 1.21480 1.85780 1.48062 1.60818 1.17248 1.06870 1.21972 0.97870 0.84216 1.03572 1.19353 0.96771 0.91624 0.79487 1.21396 0.98409 1.26438 1.10682 0.92403 1.24939 0.96104 0.96579 0.96418 1.69922 1.24116 1.40223 1.18995 0.86540 0.82276 0.80381 0.78121 1.20209 1.21133 1.20135 0.91390 0.89014 0.90673 0.91728 0.91031 0.90169 0.89593 0.89802 0.89559 0.90712 0.90462 0.88657 0.93457 0.90132 0.91695 0.94666 0.93608 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 9.14 37.16 0.34 -2.13 16 2 C 0.07 1.19 2.16 -27.88 -0.06 1.13 16 3 H 0.10 1.63 6.73 -51.93 -0.35 1.28 16 4 O -0.32 -5.56 9.13 -45.87 -0.42 -5.98 16 5 C 0.47 7.08 6.99 36.01 0.25 7.33 16 6 O -0.51 -8.34 15.13 -18.75 -0.28 -8.63 16 7 C -0.08 -0.91 1.32 -154.85 -0.20 -1.11 16 8 C -0.13 -1.35 9.01 37.16 0.33 -1.02 16 9 C -0.12 -1.11 7.21 -25.83 -0.19 -1.29 16 10 C -0.14 -1.01 7.74 -25.83 -0.20 -1.21 16 11 C -0.12 -1.08 6.99 -25.92 -0.18 -1.26 16 12 C 0.51 11.14 7.03 -10.99 -0.08 11.07 16 13 O -0.52 -13.65 16.08 -13.95 -0.22 -13.88 16 14 N -0.60 -12.86 2.86 -182.95 -0.52 -13.38 16 15 C 0.07 1.08 9.80 59.85 0.59 1.67 16 16 C 0.25 6.47 5.18 -5.19 -0.03 6.44 16 17 C -0.53 -14.97 9.39 -34.43 -0.32 -15.29 16 18 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 21 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 1.26 5.46 -51.93 -0.28 0.97 16 27 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.56 7.34 -51.93 -0.38 0.18 16 30 H 0.08 0.99 7.92 -51.93 -0.41 0.58 16 31 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.09 0.52 7.64 -51.93 -0.40 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 0.63 8.10 -51.92 -0.42 0.21 16 36 H 0.09 0.96 7.45 -51.93 -0.39 0.58 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 39 H 0.06 0.87 4.31 -51.93 -0.22 0.65 16 40 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 41 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -33.97 346.20 -6.93 -40.90 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.57 Total: -1.18 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.16 Total: 5.99 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.21 Total: -39.15 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.93 Total: -28.48 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.97 -6.93 -40.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750534549.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.133 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds