Wall clock time and date at job start Tue Mar 31 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47536 * 2 1 4 4 O 1.45202 * 109.47118 * 119.99562 * 2 1 3 5 5 C 1.34229 * 117.00253 * 270.00196 * 4 2 1 6 6 O 1.20823 * 119.99635 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99917 * 179.97438 * 5 4 2 8 8 H 1.08999 * 115.55343 * 325.67464 * 7 5 4 9 9 C 1.53001 * 117.49416 * 111.37598 * 7 5 4 10 10 C 1.53004 * 117.49674 * 179.97438 * 7 5 4 11 11 C 1.53001 * 117.49806 * 0.02562 * 10 7 5 12 12 C 1.53005 * 117.49646 * 144.99950 * 10 7 5 13 13 C 1.50703 * 109.47344 * 239.99492 * 2 1 3 14 14 O 1.21283 * 120.00317 * 245.00183 * 13 2 1 15 15 N 1.34777 * 119.99512 * 65.00380 * 13 2 1 16 16 C 1.46494 * 120.00353 * 359.97438 * 15 13 2 17 17 C 1.46506 * 119.99692 * 180.02562 * 15 13 2 18 18 C 1.50700 * 109.46957 * 269.99667 * 17 15 13 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 15 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 15 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 H 1.09004 * 109.47217 * 300.00634 * 1 2 3 27 27 H 1.09004 * 109.47138 * 60.00186 * 1 2 3 28 28 H 1.08999 * 109.47536 * 180.02562 * 1 2 3 29 29 H 1.08999 * 117.49904 * 214.97242 * 9 7 5 30 30 H 1.08997 * 117.50407 * 0.02562 * 9 7 5 31 31 H 1.08997 * 109.46865 * 59.99792 * 11 10 7 32 32 H 1.08997 * 109.46770 * 179.97438 * 11 10 7 33 33 H 1.08999 * 109.46928 * 299.99613 * 11 10 7 34 34 H 1.08995 * 109.46905 * 60.00211 * 12 10 7 35 35 H 1.08993 * 109.46676 * 180.02562 * 12 10 7 36 36 H 1.08998 * 109.47040 * 300.00144 * 12 10 7 37 37 H 1.09001 * 109.47692 * 270.00267 * 16 15 13 38 38 H 1.09005 * 109.47406 * 30.00419 * 16 15 13 39 39 H 1.09005 * 109.47323 * 150.00309 * 16 15 13 40 40 H 1.08994 * 109.47197 * 150.00056 * 17 15 13 41 41 H 1.08998 * 109.47414 * 29.99736 * 17 15 13 42 42 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6844 1.1856 5 6 2.2171 0.0641 2.2812 6 8 1.9981 1.2519 2.2503 7 6 2.7182 -0.5771 3.5496 8 1 2.3656 -1.5918 3.7345 9 6 4.1362 -0.2274 4.0053 10 6 2.9302 0.3297 4.7635 11 6 2.6167 1.8180 4.5969 12 6 2.6306 -0.2570 6.1445 13 6 2.0323 -0.7105 -1.2304 14 8 2.6530 -1.7468 -1.1214 15 7 1.7919 -0.1943 -2.4520 16 6 1.0419 1.0571 -2.5837 17 6 2.2798 -0.8853 -3.6481 18 6 3.6615 -0.3880 -3.9870 19 1 4.1295 0.3669 -3.3726 20 6 4.3281 -0.8967 -5.0815 21 7 3.7580 -1.8156 -5.8300 22 14 6.0410 -0.2809 -5.5012 23 1 6.5355 -0.9811 -6.7137 24 1 5.9922 1.1809 -5.7584 25 1 6.9572 -0.5532 -4.3647 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 4.7169 -1.0121 4.4903 30 1 4.7065 0.4667 3.3881 31 1 1.5681 1.9402 4.3257 32 1 2.8120 2.3376 5.5350 33 1 3.2463 2.2362 3.8116 34 1 3.2688 -1.1235 6.3173 35 1 2.8243 0.4956 6.9087 36 1 1.5849 -0.5608 6.1910 37 1 -0.0221 0.8359 -2.6683 38 1 1.2150 1.6788 -1.7052 39 1 1.3745 1.5880 -3.4757 40 1 1.6073 -0.6862 -4.4824 41 1 2.3161 -1.9580 -3.4587 42 1 2.8686 -2.1357 -5.6118 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751797007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:34 Heat of formation + Delta-G solvation = -97.719759 kcal Electronic energy + Delta-G solvation = -22847.526645 eV Core-core repulsion = 19407.903326 eV Total energy + Delta-G solvation = -3439.623318 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94613 -39.35583 -38.04703 -36.11354 -35.05832 -33.15254 -31.64285 -29.79475 -27.71316 -27.43383 -26.21634 -25.35871 -23.88974 -22.46263 -20.85109 -19.39681 -18.93584 -17.90556 -16.93996 -16.66257 -16.15134 -15.90728 -15.30183 -14.73224 -14.47459 -14.06599 -13.93239 -13.69808 -13.62587 -13.33328 -12.99255 -12.75693 -12.47602 -12.33058 -12.25802 -12.15795 -12.01666 -11.75470 -11.55808 -11.42254 -11.36466 -10.94358 -10.72664 -10.59942 -10.52459 -10.33040 -10.10758 -9.94022 -9.17861 -9.00775 -8.41423 -7.72574 -6.41746 -4.14112 2.04807 2.40320 3.17646 3.41865 3.43193 3.46462 3.63557 3.76891 4.30510 4.44364 4.49567 4.52119 4.72832 4.77888 4.83457 4.98331 5.03368 5.28938 5.33710 5.37650 5.43244 5.47725 5.57093 5.60124 5.63108 5.69566 5.72486 5.76338 5.78028 5.90453 5.93075 6.12971 6.20439 6.47287 6.72842 7.05501 7.28068 7.75717 7.98642 8.13832 8.38275 8.72928 8.86912 9.55492 10.95832 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.022505 B = 0.003819 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.876692 B = 7329.143303 C = 7916.215022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.105 0.895 4 O -0.322 6.322 5 C 0.491 3.509 6 O -0.507 6.507 7 C -0.163 4.163 8 H 0.135 0.865 9 C -0.141 4.141 10 C -0.094 4.094 11 C -0.108 4.108 12 C -0.116 4.116 13 C 0.509 3.491 14 O -0.519 6.519 15 N -0.592 5.592 16 C 0.077 3.923 17 C 0.237 3.763 18 C -0.610 4.610 19 H 0.052 0.948 20 C 0.021 3.979 21 N -0.908 5.908 22 Si 1.072 2.928 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.287 1.287 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.025 0.975 41 H 0.035 0.965 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 6.355 20.183 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.123 0.877 4 O -0.237 6.237 5 C 0.335 3.665 6 O -0.396 6.396 7 C -0.182 4.182 8 H 0.153 0.847 9 C -0.178 4.178 10 C -0.094 4.094 11 C -0.165 4.165 12 C -0.173 4.173 13 C 0.293 3.707 14 O -0.394 6.394 15 N -0.326 5.326 16 C -0.067 4.067 17 C 0.118 3.882 18 C -0.648 4.648 19 H 0.070 0.930 20 C -0.184 4.184 21 N -0.544 5.544 22 Si 0.900 3.100 23 H -0.206 1.206 24 H -0.214 1.214 25 H -0.214 1.214 26 H 0.088 0.912 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.121 0.879 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.578 5.964 19.080 20.508 hybrid contribution -1.368 0.302 0.896 1.663 sum -5.946 6.265 19.976 21.764 Atomic orbital electron populations 1.22273 0.92368 1.03989 1.04024 1.22582 0.95685 0.97561 0.82892 0.87694 1.86611 1.76295 1.41481 1.19361 1.22670 0.73948 0.85297 0.84596 1.90635 1.48464 1.16349 1.84106 1.21885 1.03409 1.01889 0.91066 0.84707 1.23319 0.89053 1.03341 1.02067 1.21733 1.00776 0.95485 0.91424 1.21423 1.03082 0.90928 1.01026 1.21409 1.02008 1.00733 0.93198 1.19800 0.81104 0.85943 0.83834 1.90706 1.39515 1.23457 1.85749 1.47859 1.54154 1.23972 1.06604 1.21845 0.95246 0.86632 1.02953 1.19396 0.94967 0.93472 0.80386 1.22247 1.01594 1.26184 1.14803 0.93014 1.25827 1.04919 0.94641 0.92977 1.70811 1.16723 1.27387 1.39458 0.83502 0.74542 0.75633 0.76371 1.20582 1.21398 1.21367 0.91217 0.89363 0.91009 0.87105 0.87873 0.91349 0.92815 0.91576 0.91974 0.91406 0.91800 0.93085 0.92170 0.90307 0.95669 0.94657 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.27 37.15 0.34 -1.92 16 2 C 0.07 1.22 2.16 -27.88 -0.06 1.16 16 3 H 0.11 1.73 6.15 -51.93 -0.32 1.42 16 4 O -0.32 -5.67 9.42 -45.89 -0.43 -6.11 16 5 C 0.49 7.37 7.69 36.01 0.28 7.64 16 6 O -0.51 -7.95 12.33 -18.75 -0.23 -8.18 16 7 C -0.16 -1.88 6.02 -91.77 -0.55 -2.43 16 8 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 9 C -0.14 -1.39 9.52 -26.75 -0.25 -1.65 16 10 C -0.09 -0.89 2.70 -154.52 -0.42 -1.31 16 11 C -0.11 -1.10 8.09 37.16 0.30 -0.80 16 12 C -0.12 -0.80 9.85 37.16 0.37 -0.44 16 13 C 0.51 11.22 7.10 -10.98 -0.08 11.14 16 14 O -0.52 -13.85 16.09 -14.05 -0.23 -14.08 16 15 N -0.59 -12.83 2.86 -182.95 -0.52 -13.35 16 16 C 0.08 1.23 8.92 59.84 0.53 1.76 16 17 C 0.24 6.21 4.47 -5.19 -0.02 6.19 16 18 C -0.61 -17.67 9.39 -34.44 -0.32 -17.99 16 19 H 0.05 1.52 7.81 -52.49 -0.41 1.11 16 20 C 0.02 0.61 5.46 -17.82 -0.10 0.51 16 21 N -0.91 -27.78 13.65 55.43 0.76 -27.02 16 22 Si 1.07 25.77 29.90 -169.99 -5.08 20.69 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.04 5.12 -51.93 -0.27 0.77 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.11 0.87 8.05 -51.93 -0.42 0.45 16 30 H 0.10 1.11 8.05 -51.93 -0.42 0.69 16 31 H 0.07 0.77 7.26 -51.93 -0.38 0.39 16 32 H 0.05 0.44 7.92 -51.93 -0.41 0.03 16 33 H 0.07 0.77 7.02 -51.93 -0.36 0.41 16 34 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 35 H 0.07 0.40 7.92 -51.93 -0.41 -0.01 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.05 0.67 7.02 -51.93 -0.36 0.30 16 38 H 0.06 0.82 6.07 -51.93 -0.32 0.50 16 39 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 40 H 0.03 0.65 7.94 -51.93 -0.41 0.24 16 41 H 0.04 1.03 7.29 -51.93 -0.38 0.65 16 42 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 LS Contribution 345.61 15.07 5.21 5.21 Total: -1.00 -35.25 345.61 -6.99 -42.24 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.48 Total: -1.27 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 0.02 Total: 1.88 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.23 Total: -40.37 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.89 Total: -28.37 kcal Atomic # 14 Polarization: 25.77 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.25 -6.99 -42.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751797007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.482 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds