Wall clock time and date at job start Tue Mar 31 2020 06:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47341 * 2 1 4 4 O 1.45208 * 109.46988 * 240.00062 * 2 1 3 5 5 C 1.34230 * 116.99804 * 90.00027 * 4 2 1 6 6 O 1.20821 * 120.00311 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99611 * 180.02562 * 5 4 2 8 8 H 1.09003 * 115.55169 * 325.66675 * 7 5 4 9 9 C 1.52997 * 117.50113 * 111.37641 * 7 5 4 10 10 C 1.52994 * 117.49650 * 180.02562 * 7 5 4 11 11 C 1.53000 * 117.50311 * 359.97438 * 10 7 5 12 12 C 1.53000 * 117.49867 * 144.99525 * 10 7 5 13 13 C 1.50699 * 109.47125 * 120.00237 * 2 1 3 14 14 O 1.21279 * 120.00406 * 114.99859 * 13 2 1 15 15 N 1.34780 * 119.99563 * 294.99441 * 13 2 1 16 16 C 1.46499 * 120.00229 * 0.02562 * 15 13 2 17 17 C 1.46499 * 119.99546 * 180.02562 * 15 13 2 18 18 C 1.50703 * 109.47349 * 270.00192 * 17 15 13 19 19 H 1.08007 * 119.99972 * 0.02562 * 18 17 15 20 20 C 1.37872 * 120.00296 * 180.02562 * 18 17 15 21 21 N 1.31512 * 120.00149 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00169 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47250 * 89.99298 * 22 20 18 24 24 H 1.48490 * 109.47435 * 209.99746 * 22 20 18 25 25 H 1.48498 * 109.47118 * 330.00059 * 22 20 18 26 26 H 1.08997 * 109.46949 * 300.00192 * 1 2 3 27 27 H 1.09002 * 109.47329 * 59.99974 * 1 2 3 28 28 H 1.09000 * 109.47341 * 180.02562 * 1 2 3 29 29 H 1.08990 * 117.50006 * 214.97673 * 9 7 5 30 30 H 1.09007 * 117.49459 * 0.02562 * 9 7 5 31 31 H 1.09000 * 109.46926 * 59.99985 * 11 10 7 32 32 H 1.09002 * 109.47330 * 180.02562 * 11 10 7 33 33 H 1.08999 * 109.46902 * 300.00271 * 11 10 7 34 34 H 1.09003 * 109.47507 * 60.00169 * 12 10 7 35 35 H 1.09006 * 109.47385 * 179.97438 * 12 10 7 36 36 H 1.08999 * 109.47717 * 299.99858 * 12 10 7 37 37 H 1.09002 * 109.47391 * 89.99442 * 16 15 13 38 38 H 1.09001 * 109.46813 * 329.99499 * 16 15 13 39 39 H 1.09004 * 109.47041 * 209.99626 * 16 15 13 40 40 H 1.08993 * 109.47560 * 30.00104 * 17 15 13 41 41 H 1.09000 * 109.47209 * 150.00790 * 17 15 13 42 42 H 0.96993 * 120.00222 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0140 -0.6845 -1.1856 5 6 2.2171 0.0640 -2.2812 6 8 1.9974 1.2517 -2.2507 7 6 2.7182 -0.5772 -3.5496 8 1 3.4115 -1.4074 -3.4145 9 6 1.7529 -0.6480 -4.7345 10 6 2.9302 0.3295 -4.7635 11 6 2.6168 1.8178 -4.5970 12 6 4.0988 0.0011 -5.6950 13 6 2.0323 -0.7105 1.2304 14 8 2.6529 -1.7467 1.1215 15 7 1.7919 -0.1941 2.4520 16 6 1.0419 1.0574 2.5836 17 6 2.2808 -0.8845 3.6481 18 6 1.2346 -1.8563 4.1300 19 1 0.2993 -1.9506 3.5983 20 6 1.4714 -2.6250 5.2498 21 7 2.6105 -2.5106 5.8971 22 14 0.1750 -3.8301 5.8468 23 1 0.3903 -5.1495 5.2001 24 1 0.2783 -3.9785 7.3206 25 1 -1.1745 -3.3205 5.4940 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8109 -1.5249 -5.3792 30 1 0.7555 -0.2303 -4.5968 31 1 3.2464 2.2360 -3.8117 32 1 2.8122 2.3374 -5.5351 33 1 1.5682 1.9401 -4.3258 34 1 3.9674 -1.0009 -6.1034 35 1 4.1280 0.7243 -6.5100 36 1 5.0331 0.0458 -5.1355 37 1 -0.0221 0.8362 2.6681 38 1 1.2151 1.6789 1.7051 39 1 1.3746 1.5883 3.4756 40 1 3.1956 -1.4256 3.4069 41 1 2.4861 -0.1541 4.4307 42 1 2.7773 -3.0517 6.6846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751797009.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:36 Heat of formation + Delta-G solvation = -94.330908 kcal Electronic energy + Delta-G solvation = -22769.918008 eV Core-core repulsion = 19330.441641 eV Total energy + Delta-G solvation = -3439.476367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91722 -39.27930 -38.00380 -36.07498 -34.92003 -32.87698 -31.60139 -29.79442 -27.72807 -27.70447 -26.20626 -25.31590 -24.00402 -22.39925 -20.76375 -19.37318 -18.73553 -17.91250 -16.58809 -16.49746 -16.14417 -15.77671 -15.16073 -14.81516 -14.51408 -14.35436 -13.94750 -13.82422 -13.51824 -13.09596 -12.83674 -12.71670 -12.40777 -12.25052 -12.15124 -12.07129 -12.06186 -11.73767 -11.53229 -11.35564 -11.25320 -10.88289 -10.69692 -10.55914 -10.52806 -10.32921 -10.16805 -9.93628 -9.66114 -8.90187 -8.45194 -7.73498 -6.06260 -4.11140 2.05680 2.46330 3.25477 3.30798 3.36935 3.39450 3.41492 3.87552 4.29760 4.42254 4.45563 4.49236 4.78586 4.81882 4.90669 5.04649 5.09921 5.28388 5.30481 5.39571 5.41583 5.52503 5.63502 5.64660 5.70153 5.72676 5.73354 5.77137 5.88096 5.92148 6.04059 6.20284 6.23175 6.51298 6.97755 7.37991 7.46180 7.78699 7.89738 8.19507 8.28279 8.84259 8.98996 9.53808 11.02013 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032201 B = 0.003416 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.341784 B = 8193.667360 C = 8386.795531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.071 3.929 3 H 0.104 0.896 4 O -0.322 6.322 5 C 0.491 3.509 6 O -0.508 6.508 7 C -0.164 4.164 8 H 0.136 0.864 9 C -0.142 4.142 10 C -0.093 4.093 11 C -0.107 4.107 12 C -0.117 4.117 13 C 0.508 3.492 14 O -0.519 6.519 15 N -0.596 5.596 16 C 0.078 3.922 17 C 0.246 3.754 18 C -0.528 4.528 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.895 5.895 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.274 1.274 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.962 8.682 -20.079 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 H 0.121 0.879 4 O -0.237 6.237 5 C 0.335 3.665 6 O -0.397 6.397 7 C -0.183 4.183 8 H 0.154 0.846 9 C -0.179 4.179 10 C -0.094 4.094 11 C -0.164 4.164 12 C -0.174 4.174 13 C 0.292 3.708 14 O -0.395 6.395 15 N -0.330 5.330 16 C -0.065 4.065 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.727 3.273 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.128 0.872 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.595 8.405 -19.893 21.655 hybrid contribution -0.788 -0.658 0.683 1.233 sum -2.383 7.748 -19.210 20.851 Atomic orbital electron populations 1.22259 0.92279 1.04242 1.03847 1.22624 0.95898 0.97319 0.82892 0.87862 1.86625 1.76210 1.41377 1.19457 1.22649 0.73826 0.85310 0.84733 1.90629 1.48578 1.16331 1.84164 1.21908 1.06038 1.04543 0.85770 0.84590 1.23311 0.95194 1.01881 0.97514 1.21736 0.97916 0.94095 0.95618 1.21420 1.02865 0.91132 1.01006 1.21416 0.96175 1.01786 0.98061 1.19780 0.81381 0.85781 0.83827 1.90705 1.40156 1.22759 1.85859 1.48069 1.54251 1.23829 1.06839 1.21830 0.96674 0.86197 1.01845 1.19369 0.96004 0.92184 0.79664 1.21416 1.02292 1.21951 1.10976 0.92377 1.24936 0.95753 0.96992 0.96416 1.69927 1.23315 1.40710 1.19412 0.86478 0.81607 0.81535 0.77687 1.20506 1.21124 1.19905 0.89227 0.91484 0.90835 0.87208 0.88013 0.91267 0.92850 0.91645 0.91992 0.91430 0.91672 0.92596 0.92502 0.90905 0.93714 0.94605 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 9.27 37.16 0.34 -2.07 16 2 C 0.07 1.22 2.16 -27.88 -0.06 1.15 16 3 H 0.10 1.62 6.15 -51.93 -0.32 1.30 16 4 O -0.32 -5.62 9.42 -45.89 -0.43 -6.05 16 5 C 0.49 7.22 7.69 36.01 0.28 7.50 16 6 O -0.51 -7.77 12.33 -18.75 -0.23 -8.01 16 7 C -0.16 -1.84 6.02 -91.78 -0.55 -2.40 16 8 H 0.14 1.43 8.14 -51.93 -0.42 1.01 16 9 C -0.14 -1.24 9.53 -26.71 -0.25 -1.50 16 10 C -0.09 -0.86 2.70 -154.49 -0.42 -1.28 16 11 C -0.11 -1.06 8.09 37.16 0.30 -0.76 16 12 C -0.12 -0.82 9.85 37.16 0.37 -0.46 16 13 C 0.51 11.12 7.10 -10.98 -0.08 11.04 16 14 O -0.52 -13.77 16.09 -14.05 -0.23 -14.00 16 15 N -0.60 -12.81 2.86 -182.95 -0.52 -13.33 16 16 C 0.08 1.23 8.96 59.85 0.54 1.77 16 17 C 0.25 6.47 5.20 -5.19 -0.03 6.45 16 18 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 19 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.61 13.29 55.43 0.74 -25.88 16 22 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.09 1.16 5.12 -51.93 -0.27 0.90 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 30 H 0.10 0.90 8.05 -51.93 -0.42 0.48 16 31 H 0.07 0.79 7.26 -51.93 -0.38 0.41 16 32 H 0.05 0.42 7.92 -51.93 -0.41 0.01 16 33 H 0.06 0.71 7.02 -51.93 -0.36 0.34 16 34 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 35 H 0.07 0.40 7.93 -51.93 -0.41 -0.01 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.82 7.02 -51.93 -0.36 0.46 16 38 H 0.06 0.73 6.07 -51.93 -0.32 0.41 16 39 H 0.07 1.09 7.89 -51.93 -0.41 0.68 16 40 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 41 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -34.12 346.67 -6.97 -41.09 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.52 Total: -1.71 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 0.01 Total: 5.79 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.21 Total: -39.20 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.89 Total: -28.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.12 -6.97 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751797009.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.236 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds