Wall clock time and date at job start Tue Mar 31 2020 06:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46751 * 2 1 4 4 O 1.45195 * 109.47043 * 120.00121 * 2 1 3 5 5 C 1.34229 * 116.99851 * 269.99868 * 4 2 1 6 6 O 1.20828 * 120.00191 * 0.02562 * 5 4 2 7 7 C 1.50704 * 119.99907 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47093 * 185.54087 * 7 5 4 9 9 C 1.53002 * 115.55057 * 279.64808 * 8 7 5 10 10 C 1.52998 * 117.49613 * 133.93465 * 8 7 5 11 11 C 1.52996 * 60.00086 * 252.51381 * 10 8 7 12 12 C 1.50706 * 109.46927 * 240.00094 * 2 1 3 13 13 O 1.21277 * 119.99561 * 244.99619 * 12 2 1 14 14 N 1.34776 * 119.99924 * 65.00193 * 12 2 1 15 15 C 1.46496 * 120.00010 * 359.97438 * 14 12 2 16 16 C 1.46504 * 119.99465 * 179.71999 * 14 12 2 17 17 C 1.50688 * 109.47238 * 270.27328 * 16 14 12 18 18 H 1.07999 * 120.00275 * 0.02562 * 17 16 14 19 19 C 1.37882 * 119.99804 * 180.02562 * 17 16 14 20 20 N 1.31511 * 119.99891 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99954 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46908 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46815 * 119.99617 * 21 19 17 24 24 H 1.48497 * 109.47267 * 240.00130 * 21 19 17 25 25 H 1.08997 * 109.47122 * 299.99954 * 1 2 3 26 26 H 1.09007 * 109.46912 * 59.99762 * 1 2 3 27 27 H 1.08999 * 109.47145 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47496 * 305.54054 * 7 5 4 29 29 H 1.08999 * 109.47210 * 65.54743 * 7 5 4 30 30 H 1.08997 * 109.47447 * 65.00003 * 9 8 7 31 31 H 1.08998 * 109.46631 * 185.00331 * 9 8 7 32 32 H 1.08994 * 109.46899 * 304.99530 * 9 8 7 33 33 H 1.09002 * 117.50284 * 0.02562 * 10 8 7 34 34 H 1.09007 * 117.49545 * 145.02559 * 10 8 7 35 35 H 1.09006 * 117.49869 * 252.50762 * 11 10 8 36 36 H 1.08999 * 117.49844 * 107.49687 * 11 10 8 37 37 H 1.09000 * 109.47298 * 269.72465 * 15 14 12 38 38 H 1.08996 * 109.47427 * 29.72626 * 15 14 12 39 39 H 1.09005 * 109.46869 * 149.72531 * 15 14 12 40 40 H 1.09001 * 109.46994 * 30.27981 * 16 14 12 41 41 H 1.09003 * 109.46494 * 150.27445 * 16 14 12 42 42 H 0.97006 * 119.99610 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1855 5 6 2.2171 0.0640 2.2810 6 8 1.9973 1.2517 2.2506 7 6 2.7193 -0.5771 3.5491 8 6 2.7326 0.4598 4.6742 9 6 3.9319 1.4100 4.6817 10 6 2.1533 0.0417 6.0271 11 6 1.3852 1.0191 5.1353 12 6 2.0323 -0.7104 -1.2305 13 8 2.6530 -1.7466 -1.1215 14 7 1.7919 -0.1941 -2.4520 15 6 1.0418 1.0573 -2.5836 16 6 2.2855 -0.8816 -3.6479 17 6 3.6680 -0.3824 -3.9796 18 1 4.1328 0.3713 -3.3613 19 6 4.3397 -0.8878 -5.0726 20 7 3.7735 -1.8052 -5.8257 21 14 6.0539 -0.2694 -5.4834 22 1 6.4625 0.7542 -4.4882 23 1 7.0112 -1.4041 -5.4473 24 1 6.0508 0.3327 -6.8408 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0627 -1.4026 3.8237 29 1 3.7297 -0.9537 3.3904 30 1 3.9073 2.0332 3.7879 31 1 3.8879 2.0433 5.5677 32 1 4.8546 0.8301 4.6952 33 1 1.7631 -0.9722 6.1159 34 1 2.6267 0.4434 6.9231 35 1 1.3532 2.0639 5.4445 36 1 0.4893 0.6485 4.6372 37 1 -0.0217 0.8358 -2.6731 38 1 1.2110 1.6767 -1.7029 39 1 1.3779 1.5906 -3.4729 40 1 2.3218 -1.9549 -3.4610 41 1 1.6162 -0.6809 -4.4845 42 1 4.2462 -2.1611 -6.5945 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758830486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:22 Heat of formation + Delta-G solvation = -97.712656 kcal Electronic energy + Delta-G solvation = -22745.253084 eV Core-core repulsion = 19305.630074 eV Total energy + Delta-G solvation = -3439.623010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.74114 -39.14947 -38.06942 -36.13453 -34.91591 -32.90563 -31.70670 -30.00008 -28.38449 -27.69086 -26.15724 -24.46247 -22.87133 -22.62046 -21.15708 -19.22742 -18.74804 -17.76770 -16.65242 -16.53746 -16.24675 -15.75327 -15.54096 -15.07490 -14.65853 -14.46783 -14.11404 -13.63433 -13.34221 -13.06300 -12.81909 -12.60757 -12.37803 -12.31907 -12.15905 -12.03332 -11.75168 -11.64555 -11.49592 -11.38903 -11.21211 -10.90108 -10.69870 -10.65761 -10.55873 -10.32688 -10.18083 -9.90309 -9.64277 -8.89800 -8.46266 -7.73172 -6.07067 -4.11957 2.25186 2.50081 3.26665 3.28974 3.36774 3.41498 3.54871 3.94530 4.32826 4.42812 4.49334 4.64359 4.71876 4.80623 4.92138 5.05535 5.10774 5.24162 5.27691 5.36899 5.40870 5.52644 5.60519 5.64776 5.66790 5.68712 5.72301 5.80602 5.86223 5.90495 6.00126 6.08261 6.21446 6.51970 6.98044 7.38207 7.46097 7.81508 7.89526 8.19142 8.29009 8.84284 8.99225 9.53251 11.01103 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.003678 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.545835 B = 7611.836528 C = 8193.166739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.105 0.895 4 O -0.328 6.328 5 C 0.460 3.540 6 O -0.504 6.504 7 C -0.078 4.078 8 C -0.118 4.118 9 C -0.115 4.115 10 C -0.172 4.172 11 C -0.159 4.159 12 C 0.508 3.492 13 O -0.520 6.520 14 N -0.596 5.596 15 C 0.076 3.924 16 C 0.246 3.754 17 C -0.529 4.529 18 H 0.058 0.942 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.283 1.283 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 5.988 19.488 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.012 3.988 3 H 0.122 0.878 4 O -0.244 6.244 5 C 0.302 3.698 6 O -0.391 6.391 7 C -0.115 4.115 8 C -0.118 4.118 9 C -0.172 4.172 10 C -0.209 4.209 11 C -0.196 4.196 12 C 0.292 3.708 13 O -0.396 6.396 14 N -0.330 5.330 15 C -0.067 4.067 16 C 0.128 3.872 17 C -0.567 4.567 18 H 0.076 0.924 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.209 1.209 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.123 0.877 29 H 0.131 0.869 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.415 5.668 19.310 21.122 hybrid contribution 0.883 0.503 -0.448 1.111 sum -5.532 6.171 18.861 20.602 Atomic orbital electron populations 1.22265 0.92499 1.03914 1.03936 1.22593 0.95621 0.97591 0.83021 0.87765 1.86620 1.76553 1.41605 1.19592 1.23731 0.74438 0.86120 0.85473 1.90629 1.47846 1.16472 1.84191 1.20906 1.04429 0.98049 0.88128 1.21123 0.96674 0.99786 0.94266 1.21331 0.95332 0.98067 1.02505 1.23182 1.03882 1.00351 0.93488 1.22931 0.94746 0.99210 1.02748 1.19798 0.81149 0.85950 0.83864 1.90700 1.39652 1.23434 1.85776 1.48075 1.53937 1.24019 1.06947 1.21839 0.95346 0.86762 1.02795 1.19353 0.94252 0.93855 0.79774 1.21470 1.00917 1.23121 1.11237 0.92369 1.24938 0.98257 0.94882 0.96002 1.69942 1.37999 1.28216 1.17133 0.86427 0.84122 0.78763 0.78035 1.19792 1.20804 1.20905 0.91384 0.89371 0.91051 0.87659 0.86887 0.91373 0.92376 0.92169 0.88609 0.88510 0.88599 0.89038 0.93134 0.92355 0.90319 0.93651 0.94594 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.27 37.16 0.34 -1.89 16 2 C 0.07 1.19 2.16 -27.88 -0.06 1.13 16 3 H 0.10 1.71 6.15 -51.93 -0.32 1.39 16 4 O -0.33 -5.57 9.42 -45.89 -0.43 -6.01 16 5 C 0.46 6.58 7.79 36.01 0.28 6.86 16 6 O -0.50 -7.86 14.18 -18.75 -0.27 -8.12 16 7 C -0.08 -0.81 5.75 -27.88 -0.16 -0.97 16 8 C -0.12 -1.13 1.59 -154.51 -0.25 -1.37 16 9 C -0.12 -1.09 9.66 37.16 0.36 -0.73 16 10 C -0.17 -1.30 9.87 -26.73 -0.26 -1.56 16 11 C -0.16 -1.46 9.19 -26.73 -0.25 -1.71 16 12 C 0.51 11.04 7.10 -10.98 -0.08 10.96 16 13 O -0.52 -13.67 16.09 -14.05 -0.23 -13.89 16 14 N -0.60 -12.75 2.86 -182.96 -0.52 -13.28 16 15 C 0.08 1.20 8.92 59.84 0.53 1.74 16 16 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 17 C -0.53 -15.09 9.38 -34.44 -0.32 -15.41 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 21 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.09 1.03 5.12 -51.93 -0.27 0.77 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.11 0.91 7.94 -51.93 -0.41 0.50 16 29 H 0.11 1.08 8.13 -51.93 -0.42 0.66 16 30 H 0.07 0.77 7.60 -51.93 -0.39 0.37 16 31 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 34 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 0.66 7.04 -51.93 -0.37 0.29 16 38 H 0.06 0.78 6.05 -51.93 -0.31 0.47 16 39 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 40 H 0.05 1.34 7.43 -51.93 -0.39 0.95 16 41 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 350.74 15.07 5.29 5.29 Total: -1.00 -34.32 350.74 -7.07 -41.39 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.64 Total: -1.63 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 0.02 Total: 5.12 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.21 Total: -39.08 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.92 Total: -28.02 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.32 -7.07 -41.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758830486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.324 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds