Wall clock time and date at job start Tue Mar 31 2020 06:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.82172 * 2 1 4 4 C 1.54882 * 110.75512 * 236.66138 * 2 1 3 5 5 C 1.54269 * 104.19831 * 203.74491 * 4 2 1 6 6 C 1.53873 * 106.59646 * 23.61137 * 5 4 2 7 7 H 1.09002 * 110.03070 * 240.71534 * 6 5 4 8 8 C 1.53000 * 110.03127 * 119.33247 * 6 5 4 9 9 C 1.50698 * 109.46960 * 67.09319 * 8 6 5 10 10 O 1.20827 * 120.00447 * 359.97438 * 9 8 6 11 11 O 1.34230 * 120.00051 * 179.97438 * 9 8 6 12 12 C 1.45197 * 117.00139 * 179.97438 * 11 9 8 13 13 C 1.50707 * 109.47038 * 180.02562 * 12 11 9 14 14 O 1.21273 * 120.00201 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99659 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99824 * 180.02562 * 15 13 12 17 17 C 1.50702 * 109.47191 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99861 * 0.02562 * 17 16 15 19 19 C 1.37871 * 119.99923 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00100 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46991 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47135 * 120.00206 * 21 19 17 24 24 H 1.48501 * 109.46963 * 239.99993 * 21 19 17 25 25 C 1.54273 * 106.59758 * 0.02562 * 6 5 4 26 26 H 1.08999 * 109.47318 * 181.88680 * 1 2 3 27 27 H 1.09011 * 109.46880 * 301.88521 * 1 2 3 28 28 H 1.08996 * 109.47343 * 61.88133 * 1 2 3 29 29 H 1.09000 * 110.49014 * 85.06577 * 4 2 1 30 30 H 1.09001 * 110.48811 * 322.42590 * 4 2 1 31 31 H 1.08996 * 110.03023 * 264.32581 * 5 4 2 32 32 H 1.09002 * 110.07027 * 142.91534 * 5 4 2 33 33 H 1.09001 * 109.46702 * 187.09088 * 8 6 5 34 34 H 1.08994 * 109.47550 * 307.08877 * 8 6 5 35 35 H 1.09001 * 109.47264 * 300.00159 * 12 11 9 36 36 H 1.08996 * 109.47243 * 60.00520 * 12 11 9 37 37 H 0.96998 * 120.00685 * 359.97438 * 15 13 12 38 38 H 1.08999 * 109.47190 * 300.00201 * 16 15 13 39 39 H 1.09007 * 109.47206 * 59.99843 * 16 15 13 40 40 H 0.96996 * 120.00237 * 179.97438 * 20 19 17 41 41 H 1.09001 * 110.48533 * 95.07157 * 25 6 5 42 42 H 1.08999 * 110.48202 * 217.71084 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9175 1.0188 0.0000 4 6 2.0789 -0.7960 -1.2100 5 6 3.4931 -1.2269 -0.7693 6 6 3.4931 -1.2269 0.7694 7 1 4.2326 -0.5185 1.1428 8 6 3.8014 -2.6309 1.2935 9 6 5.2215 -2.9961 0.9460 10 8 5.9157 -2.2140 0.3408 11 8 5.7153 -4.1904 1.3088 12 6 7.0906 -4.4747 0.9401 13 6 7.4671 -5.8504 1.4269 14 8 6.6561 -6.5250 2.0251 15 7 8.7052 -6.3309 1.1973 16 6 9.0711 -7.6685 1.6700 17 6 10.4986 -7.9634 1.2874 18 1 11.0757 -7.2280 0.7467 19 6 11.0681 -9.1718 1.6286 20 7 10.3655 -10.0672 2.2876 21 14 12.8378 -9.5372 1.1551 22 1 13.4049 -8.3750 0.4251 23 1 13.6365 -9.7885 2.3814 24 1 12.8788 -10.7383 0.2828 25 6 2.0786 -0.7966 1.2101 26 1 -0.3634 -1.0271 0.0338 27 1 -0.3633 0.5429 0.8727 28 1 -0.3634 0.4843 -0.9063 29 1 2.1320 -0.1593 -2.0931 30 1 1.4573 -1.6698 -1.4054 31 1 4.2325 -0.5186 -1.1427 32 1 3.7127 -2.2272 -1.1427 33 1 3.6757 -2.6502 2.3761 34 1 3.1195 -3.3475 0.8358 35 1 7.1922 -4.4329 -0.1444 36 1 7.7492 -3.7350 1.3954 37 1 9.3538 -5.7916 0.7185 38 1 8.9688 -7.7112 2.7543 39 1 8.4128 -8.4078 1.2136 40 1 10.7660 -10.9174 2.5273 41 1 1.4575 -1.6707 1.4056 42 1 2.1315 -0.1598 2.0931 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759404757.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:00 Heat of formation + Delta-G solvation = -155.733378 kcal Electronic energy + Delta-G solvation = -21539.212074 eV Core-core repulsion = 18097.073097 eV Total energy + Delta-G solvation = -3442.138978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72224 -39.06434 -38.45193 -36.31387 -34.25527 -33.04133 -32.41769 -30.12889 -29.24390 -27.72897 -26.51292 -24.59693 -22.66583 -21.36082 -20.38197 -19.95705 -19.66058 -17.71034 -17.46169 -16.91046 -16.31593 -16.05171 -15.43329 -15.06448 -14.81202 -14.63727 -14.27459 -13.98435 -13.72819 -13.24249 -13.14390 -12.93333 -12.53519 -12.37002 -12.22858 -12.00587 -11.76389 -11.43170 -11.23200 -11.00450 -11.00052 -10.95846 -10.94995 -10.84605 -10.68029 -10.65317 -10.46325 -10.35634 -9.43369 -9.18046 -8.79792 -7.99792 -6.20760 -4.28166 2.15627 2.46392 3.17463 3.21635 3.28842 3.31931 3.96099 4.21150 4.24786 4.32428 4.39395 4.73194 4.81674 4.90804 5.09103 5.11883 5.15424 5.19745 5.22816 5.25330 5.30250 5.31178 5.34299 5.40369 5.42843 5.55889 5.65031 5.73474 5.82783 5.85082 6.01052 6.13154 6.14699 6.39794 7.21719 7.30184 7.44679 7.58890 7.71814 7.90833 8.49249 8.70382 8.95764 9.38351 10.89418 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.057123 B = 0.002272 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.049390 B =12320.662263 C =12554.626458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.075 0.925 4 C -0.123 4.123 5 C -0.114 4.114 6 C -0.081 4.081 7 H 0.082 0.918 8 C -0.107 4.107 9 C 0.459 3.541 10 O -0.509 6.509 11 O -0.331 6.331 12 C 0.049 3.951 13 C 0.499 3.501 14 O -0.535 6.535 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.116 4.116 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.393 0.607 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.071 0.929 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.281 20.186 -4.756 26.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.160 4.160 5 C -0.152 4.152 6 C -0.100 4.100 7 H 0.100 0.900 8 C -0.145 4.145 9 C 0.302 3.698 10 O -0.398 6.398 11 O -0.246 6.246 12 C -0.029 4.029 13 C 0.282 3.718 14 O -0.412 6.412 15 N -0.357 5.357 16 C 0.130 3.870 17 C -0.583 4.583 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.153 4.153 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.226 0.774 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.604 19.680 -4.411 26.124 hybrid contribution 1.532 -0.052 -0.512 1.616 sum -15.072 19.628 -4.923 25.232 Atomic orbital electron populations 1.21765 0.94973 1.01883 1.01540 1.22102 0.95326 0.99227 0.95007 0.90648 1.22477 0.96307 0.99667 0.97567 1.22160 0.96750 1.01902 0.94399 1.21644 0.97660 0.94428 0.96231 0.89971 1.21578 0.89815 0.98725 1.04382 1.23871 0.90725 0.79272 0.75976 1.90658 1.60590 1.50545 1.37986 1.86576 1.29469 1.35970 1.72600 1.22841 0.80959 0.97190 1.01892 1.19913 0.83586 0.86953 0.81338 1.90704 1.49838 1.59477 1.41188 1.46370 1.11549 1.20661 1.57138 1.19182 0.95508 0.76665 0.95605 1.21249 0.96780 1.01959 1.38321 0.91703 1.24960 0.98615 0.95771 0.94700 1.69982 1.36820 1.07251 1.38125 0.86331 0.83707 0.78397 0.78299 1.19606 1.20763 1.20758 1.22516 0.94953 0.99993 0.97859 0.92537 0.92735 0.92748 0.91831 0.91579 0.91312 0.92001 0.87503 0.87458 0.88619 0.88602 0.77431 0.95247 0.95257 0.92419 0.90988 0.91385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.27 37.16 0.34 -0.46 16 2 C -0.10 -0.63 3.50 -88.62 -0.31 -0.94 16 3 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.12 -0.88 6.27 -25.07 -0.16 -1.04 16 5 C -0.11 -1.02 5.37 -25.61 -0.14 -1.15 16 6 C -0.08 -0.68 2.55 -89.50 -0.23 -0.91 16 7 H 0.08 0.76 7.95 -51.93 -0.41 0.35 16 8 C -0.11 -0.98 4.96 -27.88 -0.14 -1.12 16 9 C 0.46 5.99 7.50 36.00 0.27 6.26 16 10 O -0.51 -7.44 14.85 -18.75 -0.28 -7.72 16 11 O -0.33 -5.21 9.75 -45.90 -0.45 -5.66 16 12 C 0.05 0.75 5.94 36.01 0.21 0.96 16 13 C 0.50 10.08 7.91 -10.98 -0.09 9.99 16 14 O -0.53 -13.15 16.50 -14.10 -0.23 -13.39 16 15 N -0.71 -14.70 5.55 -61.47 -0.34 -15.04 16 16 C 0.25 6.57 5.43 -5.19 -0.03 6.55 16 17 C -0.54 -14.63 9.28 -34.44 -0.32 -14.95 16 18 H 0.06 1.62 7.60 -52.49 -0.40 1.23 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.91 20.69 29.54 -169.99 -5.02 15.67 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C -0.12 -0.76 5.81 -25.06 -0.15 -0.91 16 26 H 0.06 0.31 8.12 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.61 7.36 -51.93 -0.38 0.23 16 33 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 36 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 37 H 0.39 6.87 8.32 -40.82 -0.34 6.53 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.07 0.44 7.75 -51.93 -0.40 0.04 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 351.18 15.07 5.29 5.29 Total: -1.00 -32.86 351.18 -8.09 -40.96 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.98 Total: 1.06 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: -0.82 Total: 3.94 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.40 Total: -40.15 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.96 Total: -26.76 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.86 -8.09 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759404757.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.778 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds