Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.43632 * 2 1 4 4 C 1.54892 * 110.48623 * 122.68237 * 2 1 3 5 5 C 1.54893 * 102.74908 * 156.62162 * 4 2 1 6 6 C 1.54269 * 104.19601 * 322.06180 * 5 4 2 7 7 H 1.09001 * 110.02855 * 264.32411 * 6 5 4 8 8 C 1.52994 * 110.07176 * 142.91708 * 6 5 4 9 9 C 1.50699 * 109.47033 * 67.80981 * 8 6 5 10 10 O 1.20819 * 120.00442 * 359.97438 * 9 8 6 11 11 O 1.34234 * 119.99584 * 179.97438 * 9 8 6 12 12 C 1.45200 * 117.00059 * 179.97438 * 11 9 8 13 13 C 1.50693 * 109.47430 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00120 * 0.02562 * 13 12 11 15 15 N 1.34779 * 120.00090 * 179.97438 * 13 12 11 16 16 C 1.46500 * 119.99957 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47229 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99752 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00368 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99830 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99999 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.46951 * 60.00360 * 21 19 17 23 23 H 1.48507 * 109.46646 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47210 * 299.99965 * 21 19 17 25 25 C 1.53873 * 106.59739 * 23.60384 * 6 5 4 26 26 H 1.09002 * 109.47153 * 182.54082 * 1 2 3 27 27 H 1.09001 * 109.46832 * 62.54273 * 1 2 3 28 28 H 1.09004 * 109.47261 * 302.54255 * 1 2 3 29 29 H 1.09006 * 110.75509 * 274.93413 * 4 2 1 30 30 H 1.08994 * 110.75559 * 38.30451 * 4 2 1 31 31 H 1.08996 * 110.48467 * 203.38049 * 5 4 2 32 32 H 1.08999 * 110.59761 * 80.79225 * 5 4 2 33 33 H 1.09008 * 109.46661 * 187.80154 * 8 6 5 34 34 H 1.08993 * 109.47421 * 307.80061 * 8 6 5 35 35 H 1.09010 * 109.46858 * 300.00401 * 12 11 9 36 36 H 1.09001 * 109.46824 * 59.99980 * 12 11 9 37 37 H 0.96996 * 120.00243 * 0.02562 * 15 13 12 38 38 H 1.08997 * 109.47285 * 300.00649 * 16 15 13 39 39 H 1.09001 * 109.47144 * 60.00726 * 16 15 13 40 40 H 0.96997 * 120.00217 * 180.02562 * 20 19 17 41 41 H 1.09000 * 110.03271 * 240.71599 * 25 6 5 42 42 H 1.09005 * 110.06553 * 119.30968 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7835 1.2212 5 6 3.4907 -1.1989 0.7586 6 6 3.3166 -1.5395 -0.7359 7 1 3.1693 -2.6124 -0.8596 8 6 4.5464 -1.0854 -1.5247 9 6 5.7344 -1.9241 -1.1296 10 8 5.6104 -2.7953 -0.3017 11 8 6.9305 -1.7032 -1.6975 12 6 8.0302 -2.5487 -1.2684 13 6 9.2834 -2.1568 -2.0080 14 8 9.2528 -1.2536 -2.8168 15 7 10.4383 -2.8094 -1.7699 16 6 11.6564 -2.4289 -2.4893 17 6 12.7978 -3.3062 -2.0438 18 1 12.6323 -4.0711 -1.2995 19 6 14.0534 -3.1325 -2.5864 20 7 14.2551 -2.2008 -3.4923 21 14 15.4683 -4.2197 -2.0336 22 1 15.1449 -5.6393 -2.3251 23 1 16.7033 -3.8331 -2.7621 24 1 15.6817 -4.0502 -0.5739 25 6 2.0699 -0.7773 -1.2181 26 1 -0.3633 -1.0267 0.0456 27 1 -0.3633 0.4739 -0.9119 28 1 -0.3634 0.5528 0.8663 29 1 2.1251 -0.1407 2.1000 30 1 1.4580 -1.6617 1.4203 31 1 3.8315 -2.0738 1.3121 32 1 4.1915 -0.3733 0.8825 33 1 4.3574 -1.2031 -2.5918 34 1 4.7521 -0.0378 -1.3056 35 1 8.1873 -2.4245 -0.1968 36 1 7.7923 -3.5906 -1.4824 37 1 10.4629 -3.5315 -1.1227 38 1 11.4996 -2.5534 -3.5607 39 1 11.8940 -1.3868 -2.2756 40 1 15.1383 -2.0787 -3.8743 41 1 1.3177 -1.4803 -1.5759 42 1 2.3405 -0.0833 -2.0140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759404758.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = -155.623655 kcal Electronic energy + Delta-G solvation = -21526.355317 eV Core-core repulsion = 18084.221097 eV Total energy + Delta-G solvation = -3442.134220 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.71021 -39.06536 -38.45826 -36.31302 -34.25260 -33.04006 -32.41429 -30.16485 -29.24660 -27.66743 -26.49223 -24.59377 -22.65567 -21.33617 -20.50704 -19.94683 -19.62527 -17.82586 -17.44724 -16.75700 -16.45920 -15.65762 -15.54632 -15.20398 -14.87366 -14.67768 -14.11559 -13.93879 -13.73998 -13.31373 -13.15984 -12.96486 -12.60883 -12.42392 -12.04183 -11.98493 -11.75757 -11.41738 -11.12673 -11.08933 -11.04113 -10.98761 -10.91364 -10.86252 -10.71481 -10.62736 -10.42905 -10.35203 -9.46381 -9.17860 -8.78564 -7.99556 -6.20111 -4.27742 2.15969 2.46781 3.17553 3.23814 3.28669 3.30160 3.96581 4.22061 4.25427 4.33107 4.39995 4.73720 4.79198 4.88267 5.10371 5.15634 5.16138 5.17609 5.21868 5.24897 5.31662 5.32989 5.34503 5.35984 5.54135 5.54615 5.65337 5.72330 5.82816 5.83714 6.00557 6.10855 6.18005 6.40269 7.21826 7.30236 7.44995 7.58710 7.72160 7.91346 8.49360 8.70354 8.95821 9.38600 10.89955 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.059418 B = 0.002263 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.125662 B =12371.572721 C =12638.351581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 H 0.074 0.926 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.081 4.081 7 H 0.082 0.918 8 C -0.107 4.107 9 C 0.459 3.541 10 O -0.510 6.510 11 O -0.331 6.331 12 C 0.049 3.951 13 C 0.499 3.501 14 O -0.535 6.535 15 N -0.707 5.707 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.117 4.117 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.393 0.607 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.068 0.932 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.225 1.983 7.546 26.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.093 0.907 4 C -0.159 4.159 5 C -0.156 4.156 6 C -0.100 4.100 7 H 0.101 0.899 8 C -0.145 4.145 9 C 0.302 3.698 10 O -0.398 6.398 11 O -0.246 6.246 12 C -0.029 4.029 13 C 0.282 3.718 14 O -0.412 6.412 15 N -0.357 5.357 16 C 0.131 3.869 17 C -0.585 4.585 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.154 4.154 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.226 0.774 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -25.064 2.463 7.056 26.154 hybrid contribution 1.002 -1.049 0.618 1.577 sum -24.062 1.413 7.673 25.295 Atomic orbital electron populations 1.21810 0.95099 1.01757 1.01537 1.21989 0.95388 0.99366 0.95015 0.90738 1.22588 0.96300 0.99657 0.97309 1.22445 0.96690 1.01584 0.94911 1.21637 0.92332 1.00951 0.95043 0.89947 1.21612 0.89689 1.00197 1.03005 1.23873 0.84330 0.82903 0.78696 1.90646 1.85103 1.32379 1.31683 1.86578 1.17748 1.57584 1.62712 1.22839 0.84882 0.94985 1.00170 1.19915 0.84354 0.83715 0.83813 1.90707 1.85423 1.30053 1.35037 1.46370 1.09574 1.36295 1.43475 1.19169 0.78836 0.96575 0.92311 1.21173 0.93700 1.18734 1.24845 0.91814 1.24956 0.98835 0.95505 0.94703 1.69963 1.23322 1.31790 1.27104 0.86439 0.80957 0.80513 0.78794 1.20035 1.21035 1.20039 1.22298 0.96419 0.98903 0.97818 0.92647 0.92740 0.92786 0.91711 0.91449 0.90722 0.91813 0.87515 0.87464 0.88613 0.88607 0.77438 0.95268 0.95257 0.92308 0.91322 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.12 37.16 0.34 -0.48 16 2 C -0.10 -0.64 3.46 -88.96 -0.31 -0.95 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.12 -0.87 6.33 -24.73 -0.16 -1.02 16 5 C -0.12 -1.04 5.43 -25.07 -0.14 -1.18 16 6 C -0.08 -0.68 2.54 -89.50 -0.23 -0.91 16 7 H 0.08 0.77 7.93 -51.93 -0.41 0.36 16 8 C -0.11 -0.98 4.94 -27.89 -0.14 -1.12 16 9 C 0.46 5.98 7.74 36.01 0.28 6.26 16 10 O -0.51 -7.41 14.58 -18.74 -0.27 -7.68 16 11 O -0.33 -5.21 9.76 -45.91 -0.45 -5.66 16 12 C 0.05 0.75 5.94 36.00 0.21 0.96 16 13 C 0.50 10.08 7.91 -10.99 -0.09 9.99 16 14 O -0.53 -13.16 16.50 -14.10 -0.23 -13.39 16 15 N -0.71 -14.70 5.55 -61.48 -0.34 -15.04 16 16 C 0.25 6.59 5.43 -5.19 -0.03 6.57 16 17 C -0.55 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.88 -25.85 13.29 55.43 0.74 -25.11 16 21 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C -0.12 -0.78 6.03 -25.62 -0.15 -0.93 16 26 H 0.05 0.31 8.12 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.47 8.04 -51.93 -0.42 0.06 16 31 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 32 H 0.06 0.57 7.76 -51.93 -0.40 0.17 16 33 H 0.11 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.11 0.86 8.01 -51.93 -0.42 0.44 16 35 H 0.10 1.28 8.14 -51.92 -0.42 0.86 16 36 H 0.10 1.29 8.13 -51.93 -0.42 0.86 16 37 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 42 H 0.07 0.41 7.67 -51.93 -0.40 0.01 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -32.78 350.65 -8.07 -40.84 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.95 Total: 1.22 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -0.82 Total: 3.88 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.40 Total: -40.15 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.95 Total: -26.73 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.78 -8.07 -40.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759404758.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.780 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds