Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 110.01197 * 2 1 4 4 C 1.53867 * 110.03731 * 121.44509 * 2 1 3 5 5 C 1.54260 * 106.59893 * 119.28358 * 4 2 1 6 6 C 1.54881 * 104.19570 * 23.61254 * 5 4 2 7 7 H 1.09000 * 110.91699 * 80.44399 * 6 5 4 8 8 C 1.53002 * 110.75727 * 203.74205 * 6 5 4 9 9 C 1.50697 * 109.47166 * 288.32737 * 8 6 5 10 10 O 1.20828 * 120.00136 * 359.97438 * 9 8 6 11 11 O 1.34231 * 120.00499 * 179.97438 * 9 8 6 12 12 C 1.45200 * 117.00542 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47207 * 180.02562 * 12 11 9 14 14 O 1.21283 * 119.99803 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99675 * 180.28017 * 13 12 11 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 12 17 17 C 1.50706 * 109.47174 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99324 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00250 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00091 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00065 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.46927 * 89.99821 * 21 19 17 23 23 H 1.48498 * 109.47123 * 209.99895 * 21 19 17 24 24 H 1.48503 * 109.47167 * 329.99632 * 21 19 17 25 25 C 1.54267 * 110.03357 * 238.61610 * 2 1 3 26 26 H 1.09004 * 109.47093 * 181.39178 * 1 2 3 27 27 H 1.09004 * 109.46994 * 301.38665 * 1 2 3 28 28 H 1.09000 * 109.47695 * 61.38607 * 1 2 3 29 29 H 1.09004 * 110.03438 * 238.57499 * 4 2 1 30 30 H 1.09002 * 110.03124 * 359.95091 * 4 2 1 31 31 H 1.09004 * 110.48905 * 264.92992 * 5 4 2 32 32 H 1.09007 * 110.48799 * 142.28949 * 5 4 2 33 33 H 1.09001 * 109.47593 * 168.32857 * 8 6 5 34 34 H 1.08995 * 109.47433 * 48.32690 * 8 6 5 35 35 H 1.09009 * 109.46588 * 60.00092 * 12 11 9 36 36 H 1.08998 * 109.46989 * 300.00636 * 12 11 9 37 37 H 0.97000 * 119.99894 * 359.71837 * 15 13 12 38 38 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 39 39 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 40 40 H 0.97004 * 120.00400 * 180.02562 * 20 19 17 41 41 H 1.08993 * 110.48966 * 98.42026 * 25 2 1 42 42 H 1.09005 * 110.59292 * 335.83227 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0572 -0.7541 1.2332 5 6 2.8875 -1.9409 0.7024 6 6 3.3136 -1.5003 -0.7199 7 1 4.1717 -0.8294 -0.6788 8 6 3.6208 -2.7170 -1.5953 9 6 4.9123 -3.3481 -1.1428 10 8 5.5245 -2.8732 -0.2157 11 8 5.3826 -4.4378 -1.7697 12 6 6.6325 -4.9919 -1.2806 13 6 7.0007 -6.2016 -2.1005 14 8 6.2809 -6.5610 -3.0080 15 7 8.1273 -6.8869 -1.8219 16 6 8.4821 -8.0664 -2.6151 17 6 9.7767 -8.6444 -2.1043 18 1 10.2842 -8.1798 -1.2717 19 6 10.3128 -9.7668 -2.6990 20 7 11.4423 -10.2715 -2.2529 21 14 9.4347 -10.5707 -4.1385 22 1 9.9161 -9.9715 -5.4091 23 1 9.7184 -12.0283 -4.1399 24 1 7.9715 -10.3514 -4.0108 25 6 2.0585 -0.7548 -1.2373 26 1 -0.3633 -1.0274 0.0250 27 1 -0.3633 0.5352 0.8773 28 1 -0.3634 0.4921 -0.9021 29 1 2.6868 -0.0962 1.8324 30 1 1.2230 -1.1194 1.8323 31 1 2.2772 -2.8429 0.6556 32 1 3.7639 -2.1043 1.3297 33 1 3.7148 -2.4024 -2.6347 34 1 2.8117 -3.4419 -1.5068 35 1 6.5172 -5.2817 -0.2361 36 1 7.4197 -4.2428 -1.3650 37 1 8.7031 -6.5991 -1.0963 38 1 7.6921 -8.8125 -2.5300 39 1 8.6000 -7.7795 -3.6601 40 1 11.8197 -11.0609 -2.6716 41 1 2.3296 -0.0525 -2.0255 42 1 1.3152 -1.4651 -1.5995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759404759.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = -152.176457 kcal Electronic energy + Delta-G solvation = -21562.167619 eV Core-core repulsion = 18120.182881 eV Total energy + Delta-G solvation = -3441.984738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.74530 -39.14943 -38.57600 -36.38872 -34.38506 -33.09483 -32.44228 -30.17789 -29.47584 -27.93433 -26.84788 -24.64435 -22.30450 -21.39898 -20.24514 -20.13115 -19.82940 -17.82336 -17.51668 -16.88401 -16.57052 -16.20971 -15.55328 -15.15040 -14.96107 -14.66888 -14.19343 -13.96591 -13.80317 -13.28319 -13.21475 -13.06722 -12.58325 -12.52513 -12.40089 -12.24415 -12.03485 -11.43791 -11.22907 -11.08425 -11.07487 -10.94875 -10.90672 -10.82519 -10.74893 -10.69113 -10.47003 -10.01264 -9.55473 -9.35268 -8.83008 -8.28212 -6.25247 -4.28414 2.10866 2.38452 3.02024 3.24521 3.31361 3.39166 3.85312 4.18548 4.21607 4.29934 4.38236 4.69473 4.77627 4.89650 5.02826 5.06881 5.09325 5.15193 5.16574 5.20310 5.22354 5.23779 5.28038 5.38706 5.41494 5.56228 5.63254 5.67737 5.80173 5.83107 5.99134 6.10138 6.12827 6.34126 6.71988 6.99615 7.08343 7.30522 7.64831 8.03883 8.40111 8.66908 8.78761 9.33762 10.86479 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.053762 B = 0.002368 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.692213 B =11819.661038 C =12129.243761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.122 4.122 6 C -0.082 4.082 7 H 0.087 0.913 8 C -0.106 4.106 9 C 0.460 3.540 10 O -0.508 6.508 11 O -0.332 6.332 12 C 0.049 3.951 13 C 0.502 3.498 14 O -0.537 6.537 15 N -0.700 5.700 16 C 0.222 3.778 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.890 5.890 21 Si 0.877 3.123 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.260 1.260 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.399 0.601 38 H 0.028 0.972 39 H 0.023 0.977 40 H 0.268 0.732 41 H 0.067 0.933 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.451 20.172 4.721 28.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.101 4.101 7 H 0.106 0.894 8 C -0.144 4.144 9 C 0.303 3.697 10 O -0.397 6.397 11 O -0.247 6.247 12 C -0.028 4.028 13 C 0.285 3.715 14 O -0.415 6.415 15 N -0.350 5.350 16 C 0.100 3.900 17 C -0.584 4.584 18 H 0.099 0.901 19 C -0.126 4.126 20 N -0.527 5.527 21 Si 0.703 3.297 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.185 1.185 25 C -0.153 4.153 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.233 0.767 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.612 19.849 4.311 28.234 hybrid contribution 0.218 -0.397 -0.242 0.514 sum -19.393 19.452 4.069 27.767 Atomic orbital electron populations 1.21890 0.95036 1.01814 1.01490 1.21728 0.95628 0.99409 0.94825 0.91125 1.22218 0.99342 0.97099 0.97183 1.22462 0.99818 0.97740 0.95879 1.21999 0.98522 0.95019 0.94537 0.89447 1.21452 0.92589 0.98003 1.02323 1.23857 0.87353 0.78134 0.80378 1.90657 1.58984 1.61971 1.28056 1.86566 1.38527 1.41954 1.57666 1.22798 0.85161 0.95851 0.99016 1.19954 0.82423 0.84156 0.84984 1.90698 1.50957 1.68576 1.31239 1.46071 1.22691 1.30002 1.36258 1.19553 0.96552 0.82527 0.91332 1.21068 1.05459 1.12847 1.19043 0.90123 1.24792 0.94613 0.96231 0.96965 1.69875 1.18688 1.22798 1.41385 0.86811 0.81142 0.78846 0.82863 1.19782 1.20830 1.18474 1.22507 0.96574 0.98898 0.97331 0.92545 0.92826 0.92781 0.91908 0.91752 0.91774 0.90662 0.87435 0.87460 0.88370 0.88385 0.76707 0.95428 0.95884 0.92178 0.91431 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 8.84 37.16 0.33 -0.47 16 2 C -0.10 -0.62 3.50 -89.51 -0.31 -0.93 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.12 -0.86 6.46 -25.62 -0.17 -1.02 16 5 C -0.12 -1.02 5.76 -25.08 -0.14 -1.17 16 6 C -0.08 -0.66 2.45 -88.63 -0.22 -0.88 16 7 H 0.09 0.80 7.88 -51.93 -0.41 0.39 16 8 C -0.11 -0.91 5.31 -27.88 -0.15 -1.06 16 9 C 0.46 5.74 7.79 36.00 0.28 6.02 16 10 O -0.51 -7.19 14.59 -18.75 -0.27 -7.46 16 11 O -0.33 -4.97 9.75 -45.91 -0.45 -5.42 16 12 C 0.05 0.72 5.94 36.01 0.21 0.93 16 13 C 0.50 9.57 7.91 -10.98 -0.09 9.48 16 14 O -0.54 -12.40 16.50 -14.11 -0.23 -12.63 16 15 N -0.70 -13.90 5.55 -61.47 -0.34 -14.24 16 16 C 0.22 5.38 4.50 -5.19 -0.02 5.36 16 17 C -0.55 -14.80 9.83 -34.44 -0.34 -15.13 16 18 H 0.08 2.26 7.84 -52.48 -0.41 1.85 16 19 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 20 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 21 Si 0.88 21.19 27.47 -169.99 -4.67 16.53 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 25 C -0.12 -0.73 5.80 -25.08 -0.15 -0.88 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.43 7.67 -51.93 -0.40 0.03 16 31 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 32 H 0.07 0.76 7.39 -51.93 -0.38 0.38 16 33 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 0.79 7.99 -51.93 -0.41 0.38 16 35 H 0.10 1.25 8.13 -51.92 -0.42 0.83 16 36 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 37 H 0.40 6.83 8.32 -40.82 -0.34 6.50 16 38 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.42 7.76 -51.93 -0.40 0.01 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -32.80 347.27 -7.73 -40.52 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.91 Total: 0.55 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.86 Total: 2.35 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.43 Total: -39.67 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.95 Total: -25.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.53 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.80 -7.73 -40.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759404759.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.652 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds