Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.05547 * 2 1 4 4 C 1.54265 * 110.03495 * 238.58540 * 2 1 3 5 5 C 1.54893 * 104.19644 * 217.10542 * 4 2 1 6 6 C 1.54958 * 102.77497 * 37.91620 * 5 4 2 7 7 C 1.53880 * 110.03506 * 121.41894 * 2 1 3 8 8 H 1.08996 * 110.03186 * 238.62389 * 7 2 1 9 9 C 1.53003 * 110.02678 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46766 * 184.31283 * 9 7 2 11 11 O 1.20823 * 120.00254 * 0.02562 * 10 9 7 12 12 O 1.34231 * 119.99787 * 179.97438 * 10 9 7 13 13 C 1.45199 * 116.99556 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46894 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00011 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00072 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99880 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46957 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 H 1.08998 * 109.47117 * 298.58423 * 1 2 3 27 27 H 1.09001 * 109.47083 * 58.58286 * 1 2 3 28 28 H 1.09001 * 109.46682 * 178.58238 * 1 2 3 29 29 H 1.09001 * 110.48409 * 335.78123 * 4 2 1 30 30 H 1.08997 * 110.48814 * 98.42690 * 4 2 1 31 31 H 1.09003 * 110.75656 * 156.25518 * 5 4 2 32 32 H 1.08994 * 110.75471 * 279.43615 * 5 4 2 33 33 H 1.09010 * 110.52641 * 203.43148 * 6 5 4 34 34 H 1.08997 * 110.48189 * 80.76776 * 6 5 4 35 35 H 1.08994 * 109.47326 * 64.31108 * 9 7 2 36 36 H 1.08997 * 109.47062 * 304.30797 * 9 7 2 37 37 H 1.08995 * 109.47449 * 60.00518 * 13 12 10 38 38 H 1.08998 * 109.47711 * 299.99944 * 13 12 10 39 39 H 0.97002 * 120.00040 * 359.97438 * 16 14 13 40 40 H 1.08994 * 109.47197 * 60.00159 * 17 16 14 41 41 H 1.08998 * 109.47414 * 299.99840 * 17 16 14 42 42 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 3.3137 -1.5007 -0.7191 6 6 2.8882 -1.9406 0.7045 7 6 2.0572 -0.7536 1.2337 8 1 2.6860 -0.0952 1.8329 9 6 0.8862 -1.2664 2.0744 10 6 1.4137 -1.9090 3.3313 11 8 2.6040 -1.9520 3.5342 12 8 0.5611 -2.4327 4.2261 13 6 1.1399 -3.0360 5.4133 14 6 0.0387 -3.5667 6.2947 15 8 -1.1198 -3.4477 5.9560 16 7 0.3412 -4.1726 7.4600 17 6 -0.7293 -4.6879 8.3172 18 6 -0.1287 -5.3142 9.5493 19 1 0.9432 -5.3266 9.6809 20 6 -0.9475 -5.8712 10.5085 21 7 -2.2527 -5.8565 10.3480 22 14 -0.2031 -6.6469 12.0362 23 1 -1.2881 -7.1693 12.9049 24 1 0.6935 -7.7618 11.6384 25 1 0.5772 -5.6254 12.7798 26 1 -0.3633 0.4917 0.9024 27 1 -0.3633 0.5357 -0.8770 28 1 -0.3633 -1.0274 -0.0254 29 1 1.3143 -1.4660 -1.5966 30 1 2.3298 -0.0536 -2.0254 31 1 3.5326 -2.3678 -1.3423 32 1 4.1718 -0.8298 -0.6783 33 1 3.7644 -2.1028 1.3323 34 1 2.2784 -2.8428 0.6585 35 1 0.3210 -2.0007 1.5005 36 1 0.2357 -0.4326 2.3382 37 1 1.7132 -2.2867 5.9589 38 1 1.7973 -3.8548 5.1212 39 1 1.2677 -4.2674 7.7311 40 1 -1.3024 -5.4376 7.7716 41 1 -1.3870 -3.8692 8.6091 42 1 -2.6394 -5.4534 9.5549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769189607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = -153.566938 kcal Electronic energy + Delta-G solvation = -21842.440183 eV Core-core repulsion = 18400.395149 eV Total energy + Delta-G solvation = -3442.045034 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82563 -39.27245 -38.58686 -36.34339 -34.50217 -32.56622 -32.36207 -31.26905 -29.23198 -26.83087 -25.86731 -25.21107 -22.77232 -21.45164 -20.97503 -20.06329 -18.85426 -18.00396 -17.69853 -16.90970 -16.62701 -16.12514 -15.51702 -15.17503 -14.89369 -14.64431 -14.07771 -13.88611 -13.81172 -13.36897 -13.12876 -12.87489 -12.63533 -12.42032 -12.31501 -12.24243 -11.91923 -11.28263 -11.13209 -11.08648 -11.05873 -11.00702 -10.87913 -10.82531 -10.73673 -10.59181 -10.49164 -10.18611 -9.36014 -8.85038 -8.76272 -8.13187 -6.56495 -4.30877 2.12009 2.40854 3.05542 3.35663 3.37282 3.56374 3.88057 4.18207 4.23509 4.34022 4.41904 4.72246 4.83885 4.94393 4.99199 5.05194 5.08569 5.16729 5.18612 5.22854 5.23380 5.25386 5.28525 5.46089 5.47101 5.58760 5.63670 5.68392 5.82571 5.88507 6.00604 6.07429 6.13187 6.35663 6.89365 7.13364 7.14892 7.54625 7.67426 8.19662 8.32046 8.63994 8.78632 9.42596 10.83646 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.047552 B = 0.002455 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.686386 B =11403.794262 C =11787.875864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 H 0.074 0.926 4 C -0.121 4.121 5 C -0.127 4.127 6 C -0.118 4.118 7 C -0.077 4.077 8 H 0.082 0.918 9 C -0.109 4.109 10 C 0.457 3.543 11 O -0.510 6.510 12 O -0.332 6.332 13 C 0.050 3.950 14 C 0.500 3.500 15 O -0.536 6.536 16 N -0.702 5.702 17 C 0.241 3.759 18 C -0.625 4.625 19 H 0.058 0.942 20 C 0.023 3.977 21 N -0.900 5.900 22 Si 1.077 2.923 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.286 1.286 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.395 0.605 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.324 10.898 -21.431 26.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.110 4.110 3 H 0.093 0.907 4 C -0.158 4.158 5 C -0.164 4.164 6 C -0.155 4.155 7 C -0.096 4.096 8 H 0.100 0.900 9 C -0.147 4.147 10 C 0.300 3.700 11 O -0.398 6.398 12 O -0.247 6.247 13 C -0.028 4.028 14 C 0.283 3.717 15 O -0.413 6.413 16 N -0.352 5.352 17 C 0.120 3.880 18 C -0.664 4.664 19 H 0.077 0.923 20 C -0.183 4.183 21 N -0.534 5.534 22 Si 0.904 3.096 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.212 1.212 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.229 0.771 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.414 10.166 -20.143 24.448 hybrid contribution 1.007 0.713 -1.170 1.700 sum 10.421 10.879 -21.313 26.100 Atomic orbital electron populations 1.22062 0.94905 1.02250 1.01923 1.21784 0.95878 0.99329 0.94052 0.90714 1.22466 0.97480 0.98948 0.96930 1.22511 0.97644 0.99875 0.96382 1.22459 1.00165 0.97082 0.95833 1.21674 0.94959 0.97565 0.95366 0.89964 1.21765 1.00185 1.01937 0.90780 1.23982 0.85266 0.75666 0.85039 1.90647 1.17282 1.55015 1.76842 1.86576 1.40098 1.67947 1.30041 1.22796 0.95707 0.99249 0.85037 1.19971 0.89509 0.79732 0.82506 1.90701 1.20497 1.57272 1.72838 1.46180 1.11984 1.57434 1.19633 1.19233 0.86137 0.93817 0.88770 1.22046 0.95244 1.43291 1.05772 0.92339 1.25903 0.94836 0.95426 1.02134 1.70768 1.11023 1.41480 1.30175 0.83433 0.75182 0.76192 0.74831 1.20520 1.21234 1.21240 0.92087 0.92674 0.92031 0.91409 0.91790 0.91655 0.91546 0.90694 0.91856 0.87316 0.87190 0.88526 0.88538 0.77143 0.96263 0.96260 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 7.88 37.16 0.29 -0.65 16 2 C -0.09 -0.61 3.50 -89.50 -0.31 -0.93 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.77 6.36 -25.07 -0.16 -0.93 16 5 C -0.13 -0.90 6.91 -24.70 -0.17 -1.07 16 6 C -0.12 -1.04 5.40 -25.04 -0.14 -1.17 16 7 C -0.08 -0.65 2.55 -89.50 -0.23 -0.87 16 8 H 0.08 0.77 7.95 -51.93 -0.41 0.35 16 9 C -0.11 -1.00 3.99 -27.88 -0.11 -1.11 16 10 C 0.46 5.95 7.74 36.01 0.28 6.23 16 11 O -0.51 -7.39 14.54 -18.75 -0.27 -7.67 16 12 O -0.33 -5.19 9.76 -45.91 -0.45 -5.64 16 13 C 0.05 0.76 5.94 36.01 0.21 0.98 16 14 C 0.50 10.07 7.91 -10.98 -0.09 9.98 16 15 O -0.54 -13.05 16.50 -14.11 -0.23 -13.28 16 16 N -0.70 -14.70 5.55 -61.47 -0.34 -15.04 16 17 C 0.24 6.30 4.74 -5.19 -0.02 6.28 16 18 C -0.63 -17.01 9.28 -34.44 -0.32 -17.33 16 19 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 20 C 0.02 0.64 5.46 -17.82 -0.10 0.55 16 21 N -0.90 -27.05 13.65 55.43 0.76 -26.29 16 22 Si 1.08 24.18 29.90 -169.99 -5.08 19.09 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.29 -6.10 7.11 56.52 0.40 -5.69 16 26 H 0.06 0.37 6.63 -51.93 -0.34 0.02 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.38 6.84 -51.93 -0.35 0.02 16 29 H 0.07 0.42 7.84 -51.93 -0.41 0.02 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.77 7.63 -51.92 -0.40 0.37 16 34 H 0.06 0.57 7.77 -51.93 -0.40 0.17 16 35 H 0.11 0.89 6.88 -51.93 -0.36 0.53 16 36 H 0.11 0.87 6.47 -51.93 -0.34 0.53 16 37 H 0.10 1.30 8.13 -51.93 -0.42 0.88 16 38 H 0.10 1.30 8.13 -51.93 -0.42 0.87 16 39 H 0.40 7.05 8.32 -40.82 -0.34 6.71 16 40 H 0.02 0.55 8.01 -51.93 -0.42 0.13 16 41 H 0.02 0.55 8.01 -51.93 -0.42 0.13 16 42 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -33.36 343.01 -7.94 -41.30 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.63 Total: 2.42 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.86 Total: -0.06 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.42 Total: -41.34 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.95 Total: -26.59 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.36 -7.94 -41.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769189607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.265 kcal (2) G-P(sol) polarization free energy of solvation -33.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds