Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.05547 * 2 1 4 4 C 1.54265 * 110.03495 * 238.58540 * 2 1 3 5 5 C 1.54893 * 104.19644 * 217.10542 * 4 2 1 6 6 C 1.54958 * 102.77497 * 37.91620 * 5 4 2 7 7 C 1.53880 * 110.03506 * 121.41894 * 2 1 3 8 8 H 1.08996 * 110.03186 * 238.62389 * 7 2 1 9 9 C 1.53003 * 110.02678 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46766 * 184.31283 * 9 7 2 11 11 O 1.20823 * 120.00254 * 0.02562 * 10 9 7 12 12 O 1.34231 * 119.99787 * 179.97438 * 10 9 7 13 13 C 1.45199 * 116.99556 * 179.97438 * 12 10 9 14 14 C 1.50703 * 109.46894 * 180.02562 * 13 12 10 15 15 O 1.21283 * 120.00011 * 359.97438 * 14 13 12 16 16 N 1.34775 * 120.00072 * 180.02562 * 14 13 12 17 17 C 1.46506 * 119.99880 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46957 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00083 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00147 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00278 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 300.00001 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00094 * 22 20 18 26 26 H 1.08998 * 109.47117 * 298.58423 * 1 2 3 27 27 H 1.09001 * 109.47083 * 58.58286 * 1 2 3 28 28 H 1.09001 * 109.46682 * 178.58238 * 1 2 3 29 29 H 1.09001 * 110.48409 * 335.78123 * 4 2 1 30 30 H 1.08997 * 110.48814 * 98.42690 * 4 2 1 31 31 H 1.09003 * 110.75656 * 156.25518 * 5 4 2 32 32 H 1.08994 * 110.75471 * 279.43615 * 5 4 2 33 33 H 1.09010 * 110.52641 * 203.43148 * 6 5 4 34 34 H 1.08997 * 110.48189 * 80.76776 * 6 5 4 35 35 H 1.08994 * 109.47326 * 64.31108 * 9 7 2 36 36 H 1.08997 * 109.47062 * 304.30797 * 9 7 2 37 37 H 1.08995 * 109.47449 * 60.00518 * 13 12 10 38 38 H 1.08998 * 109.47711 * 299.99944 * 13 12 10 39 39 H 0.97002 * 120.00040 * 359.97438 * 16 14 13 40 40 H 1.08994 * 109.47197 * 60.00159 * 17 16 14 41 41 H 1.08998 * 109.47414 * 299.99840 * 17 16 14 42 42 H 0.97005 * 119.99661 * 359.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 3.3137 -1.5007 -0.7191 6 6 2.8882 -1.9406 0.7045 7 6 2.0572 -0.7536 1.2337 8 1 2.6860 -0.0952 1.8329 9 6 0.8862 -1.2664 2.0744 10 6 1.4137 -1.9090 3.3313 11 8 2.6040 -1.9520 3.5342 12 8 0.5611 -2.4327 4.2261 13 6 1.1399 -3.0360 5.4133 14 6 0.0387 -3.5667 6.2947 15 8 -1.1198 -3.4477 5.9560 16 7 0.3412 -4.1726 7.4600 17 6 -0.7293 -4.6879 8.3172 18 6 -0.1287 -5.3142 9.5493 19 1 0.9432 -5.3266 9.6809 20 6 -0.9475 -5.8712 10.5085 21 7 -2.2527 -5.8565 10.3480 22 14 -0.2031 -6.6469 12.0362 23 1 -1.2881 -7.1693 12.9049 24 1 0.6935 -7.7618 11.6384 25 1 0.5772 -5.6254 12.7798 26 1 -0.3633 0.4917 0.9024 27 1 -0.3633 0.5357 -0.8770 28 1 -0.3633 -1.0274 -0.0254 29 1 1.3143 -1.4660 -1.5966 30 1 2.3298 -0.0536 -2.0254 31 1 3.5326 -2.3678 -1.3423 32 1 4.1718 -0.8298 -0.6783 33 1 3.7644 -2.1028 1.3323 34 1 2.2784 -2.8428 0.6585 35 1 0.3210 -2.0007 1.5005 36 1 0.2357 -0.4326 2.3382 37 1 1.7132 -2.2867 5.9589 38 1 1.7973 -3.8548 5.1212 39 1 1.2677 -4.2674 7.7311 40 1 -1.3024 -5.4376 7.7716 41 1 -1.3870 -3.8692 8.6091 42 1 -2.6394 -5.4534 9.5549 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769189607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = -174.077352 kcal Electronic energy + Delta-G solvation = -21843.329581 eV Core-core repulsion = 18400.395149 eV Total energy + Delta-G solvation = -3442.934432 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.89695 -40.63538 -39.60734 -37.50974 -36.47564 -34.56763 -33.05474 -31.89177 -30.70250 -28.35832 -26.98608 -25.79021 -24.79969 -22.44628 -21.75454 -21.62002 -19.72900 -19.39218 -18.98527 -18.09376 -17.91931 -17.53127 -16.82692 -16.40426 -16.04555 -15.68634 -15.56914 -15.04156 -14.83290 -14.53370 -14.42813 -14.34894 -13.95033 -13.78745 -13.32160 -13.25755 -13.14202 -12.88722 -12.55014 -11.98116 -11.91872 -11.84755 -11.75970 -11.65055 -11.61870 -11.47341 -11.41508 -11.18408 -11.13267 -10.90082 -10.79091 -10.09919 -8.81307 -6.57464 1.09672 1.24000 1.41818 1.56482 1.64629 1.83642 2.40785 2.57470 3.06491 3.48544 3.56476 3.62940 3.70780 3.83462 3.97243 4.00941 4.26086 4.32487 4.40728 4.48230 4.56092 4.68971 4.71834 4.72748 4.84597 4.89324 4.90798 5.04844 5.05401 5.14523 5.23797 5.28652 5.30546 5.39544 5.41422 5.48629 5.49495 5.58659 6.03976 6.28282 6.56181 6.66912 7.10205 7.30852 8.58231 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.047552 B = 0.002455 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.686386 B =11403.794262 C =11787.875864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.087 4.087 3 H 0.081 0.919 4 C -0.118 4.118 5 C -0.124 4.124 6 C -0.120 4.120 7 C -0.074 4.074 8 H 0.071 0.929 9 C -0.106 4.106 10 C 0.458 3.542 11 O -0.525 6.525 12 O -0.352 6.352 13 C 0.061 3.939 14 C 0.500 3.500 15 O -0.582 6.582 16 N -0.696 5.696 17 C 0.253 3.747 18 C -0.631 4.631 19 H 0.078 0.922 20 C -0.032 4.032 21 N -0.929 5.929 22 Si 1.130 2.870 23 H -0.287 1.287 24 H -0.264 1.264 25 H -0.264 1.264 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.413 0.587 40 H -0.012 1.012 41 H -0.011 1.011 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.209 11.363 -22.077 27.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.106 4.106 3 H 0.099 0.901 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.158 4.158 7 C -0.093 4.093 8 H 0.090 0.910 9 C -0.143 4.143 10 C 0.302 3.698 11 O -0.414 6.414 12 O -0.268 6.268 13 C -0.016 4.016 14 C 0.286 3.714 15 O -0.463 6.463 16 N -0.347 5.347 17 C 0.130 3.870 18 C -0.669 4.669 19 H 0.096 0.904 20 C -0.231 4.231 21 N -0.564 5.564 22 Si 0.949 3.051 23 H -0.212 1.212 24 H -0.188 1.188 25 H -0.188 1.188 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.140 0.860 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.250 0.750 40 H 0.006 0.994 41 H 0.006 0.994 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.358 10.654 -20.827 26.005 hybrid contribution 0.433 0.609 -1.053 1.291 sum 11.791 11.263 -21.880 27.288 Atomic orbital electron populations 1.22074 0.94353 1.02407 1.02422 1.21761 0.96288 0.99359 0.93153 0.90106 1.22468 0.97021 0.99085 0.96994 1.22504 0.98160 1.00223 0.95309 1.22446 0.99443 0.97216 0.96704 1.21667 0.94485 0.97319 0.95839 0.91004 1.21953 1.00765 1.02464 0.89069 1.24703 0.84921 0.74954 0.85188 1.90642 1.17933 1.55687 1.77177 1.86585 1.41354 1.68458 1.30401 1.22656 0.93347 1.00745 0.84832 1.20779 0.90103 0.78330 0.82204 1.90678 1.22984 1.58833 1.73785 1.45901 1.11740 1.57469 1.19624 1.18760 0.86944 0.92039 0.89258 1.22420 0.96304 1.42465 1.05688 0.90367 1.27644 0.94455 0.95436 1.05542 1.70910 1.12538 1.43201 1.29800 0.82784 0.74766 0.76478 0.71064 1.21235 1.18828 1.18838 0.91953 0.91866 0.92056 0.91146 0.90699 0.91185 0.91362 0.92613 0.92256 0.86021 0.85617 0.86004 0.86053 0.75011 0.99365 0.99353 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 7.88 71.98 0.57 -1.00 16 2 C -0.09 -0.98 3.50 -10.07 -0.04 -1.02 16 3 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.12 -1.25 6.36 31.67 0.20 -1.05 16 5 C -0.12 -1.58 6.91 31.91 0.22 -1.36 16 6 C -0.12 -2.01 5.40 31.69 0.17 -1.84 16 7 C -0.07 -1.15 2.55 -10.07 -0.03 -1.17 16 8 H 0.07 1.26 7.95 -2.39 -0.02 1.25 16 9 C -0.11 -1.77 3.99 29.85 0.12 -1.65 16 10 C 0.46 11.32 7.74 71.24 0.55 11.87 16 11 O -0.53 -14.57 14.54 21.97 0.32 -14.25 16 12 O -0.35 -10.63 9.76 -45.07 -0.44 -11.07 16 13 C 0.06 1.78 5.94 71.24 0.42 2.20 16 14 C 0.50 20.09 7.91 87.66 0.69 20.78 16 15 O -0.58 -29.09 16.50 15.76 0.26 -28.83 16 16 N -0.70 -29.01 5.55 -466.78 -2.59 -31.60 16 17 C 0.25 13.59 4.74 85.63 0.41 14.00 16 18 C -0.63 -34.20 9.28 25.60 0.24 -33.96 16 19 H 0.08 3.86 7.60 -2.91 -0.02 3.83 16 20 C -0.03 -1.79 5.46 84.65 0.46 -1.33 16 21 N -0.93 -57.16 13.65 21.45 0.29 -56.87 16 22 Si 1.13 47.44 29.90 68.60 2.05 49.49 16 23 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 25 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 26 H 0.06 0.61 6.63 -2.39 -0.02 0.60 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.62 6.84 -2.39 -0.02 0.61 16 29 H 0.07 0.72 7.84 -2.39 -0.02 0.70 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.13 7.63 -2.38 -0.02 1.11 16 34 H 0.06 1.02 7.77 -2.39 -0.02 1.00 16 35 H 0.12 1.77 6.88 -2.39 -0.02 1.75 16 36 H 0.13 1.75 6.47 -2.39 -0.02 1.73 16 37 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 38 H 0.12 2.97 8.13 -2.39 -0.02 2.95 16 39 H 0.41 14.09 8.32 -92.71 -0.77 13.32 16 40 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 41 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 42 H 0.25 16.22 7.22 -92.70 -0.67 15.55 16 Total: -1.00 -73.63 343.01 4.23 -69.40 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.34 Total: 19.26 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 3.99 Total: 4.47 kcal Atomic # 7 Polarization: -86.17 SS G_CDS: -2.30 Total: -88.47 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: 0.14 Total: -54.16 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.05 Total: 49.49 kcal Total: -73.63 4.23 -69.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769189607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.675 kcal (2) G-P(sol) polarization free energy of solvation -73.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds