Wall clock time and date at job start Tue Mar 31 2020 06:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.06252 * 2 1 4 4 C 1.54088 * 110.16095 * 238.52849 * 2 1 3 5 5 C 1.54268 * 106.62185 * 240.88386 * 4 2 1 6 6 C 1.54891 * 104.19554 * 336.27880 * 5 4 2 7 7 C 1.54269 * 110.03017 * 121.41566 * 2 1 3 8 8 H 1.09004 * 110.49010 * 24.08003 * 7 2 1 9 9 C 1.53007 * 110.48587 * 261.57151 * 7 2 1 10 10 C 1.50700 * 109.46885 * 176.84181 * 9 7 2 11 11 O 1.20819 * 120.00427 * 359.97438 * 10 9 7 12 12 O 1.34231 * 119.99478 * 179.97438 * 10 9 7 13 13 C 1.45202 * 116.99541 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46885 * 179.97438 * 13 12 10 15 15 O 1.21283 * 120.00262 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99928 * 179.72354 * 14 13 12 17 17 C 1.46499 * 120.00199 * 180.27479 * 16 14 13 18 18 C 1.50694 * 109.47550 * 180.02562 * 17 16 14 19 19 H 1.08008 * 119.99963 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00446 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47041 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46896 * 120.00102 * 22 20 18 25 25 H 1.48504 * 109.47040 * 240.00259 * 22 20 18 26 26 H 1.09002 * 109.46856 * 298.58994 * 1 2 3 27 27 H 1.08997 * 109.46614 * 58.58074 * 1 2 3 28 28 H 1.08995 * 109.47596 * 178.58801 * 1 2 3 29 29 H 1.08990 * 110.11122 * 121.54142 * 4 2 1 30 30 H 1.09001 * 109.96608 * 0.14546 * 4 2 1 31 31 H 1.08991 * 110.48895 * 217.59942 * 5 4 2 32 32 H 1.09005 * 110.48550 * 94.95469 * 5 4 2 33 33 H 1.09005 * 110.75595 * 279.62851 * 6 5 4 34 34 H 1.08998 * 110.91438 * 156.32975 * 6 5 4 35 35 H 1.08993 * 109.46762 * 56.84043 * 9 7 2 36 36 H 1.08998 * 109.46838 * 296.83788 * 9 7 2 37 37 H 1.09004 * 109.47201 * 60.00222 * 13 12 10 38 38 H 1.08994 * 109.47543 * 299.99885 * 13 12 10 39 39 H 0.97000 * 120.00317 * 0.28382 * 16 14 13 40 40 H 1.08998 * 109.47134 * 300.00670 * 17 16 14 41 41 H 1.09002 * 109.46857 * 59.99862 * 17 16 14 42 42 H 0.97000 * 119.99614 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0611 -0.7552 -1.2337 5 6 2.8884 -1.9435 -0.7014 6 6 3.3131 -1.5034 0.7217 7 6 2.0584 -0.7555 1.2369 8 1 1.3133 -1.4643 1.5982 9 6 2.4392 0.2298 2.3439 10 6 2.8783 -0.5338 3.5667 11 8 2.8854 -1.7419 3.5543 12 8 3.2614 0.1284 4.6696 13 6 3.6711 -0.6717 5.8099 14 6 4.0643 0.2370 6.9460 15 8 4.0047 1.4406 6.8083 16 7 4.4764 -0.2877 8.1170 17 6 4.8530 0.5956 9.2234 18 6 5.2735 -0.2348 10.4085 19 1 5.2620 -1.3129 10.3439 20 6 5.6741 0.3816 11.5749 21 7 5.6887 1.6943 11.6535 22 14 6.1961 -0.6478 13.0437 23 1 6.0912 -2.0888 12.7006 24 1 7.6012 -0.3253 13.3999 25 1 5.3114 -0.3477 14.1981 26 1 -0.3633 0.4918 0.9024 27 1 -0.3632 0.5357 -0.8770 28 1 -0.3634 -1.0273 -0.0253 29 1 2.6928 -0.0986 -1.8317 30 1 1.2277 -1.1197 -1.8342 31 1 3.7653 -2.1086 -1.3272 32 1 2.2763 -2.8442 -0.6553 33 1 4.1718 -0.8333 0.6787 34 1 3.5312 -2.3686 1.3477 35 1 1.5768 0.8484 2.5920 36 1 3.2553 0.8651 1.9998 37 1 4.5221 -1.2930 5.5308 38 1 2.8437 -1.3084 6.1231 39 1 4.5239 -1.2503 8.2272 40 1 5.6817 1.2325 8.9140 41 1 4.0006 1.2168 9.4986 42 1 5.9702 2.1279 12.4742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769189609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:31 Heat of formation + Delta-G solvation = -155.526157 kcal Electronic energy + Delta-G solvation = -21669.230541 eV Core-core repulsion = 18227.100549 eV Total energy + Delta-G solvation = -3442.129992 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.71698 -39.09569 -38.46478 -36.29162 -34.25318 -32.42855 -32.12479 -31.49073 -29.25829 -27.11254 -26.28647 -24.81049 -22.64495 -21.36938 -20.49096 -19.94070 -19.80258 -17.66820 -17.46699 -16.73715 -16.35722 -15.63270 -15.42551 -15.15039 -14.93512 -14.84230 -14.16411 -14.09645 -13.70209 -13.26352 -13.09461 -12.91744 -12.50750 -12.45802 -12.13545 -12.00291 -11.76260 -11.30162 -11.29085 -11.01894 -10.99893 -10.95627 -10.93424 -10.84366 -10.69355 -10.64411 -10.41959 -10.35461 -9.43259 -9.17856 -8.79653 -7.99637 -6.20696 -4.28003 2.15907 2.46351 3.17595 3.21709 3.28912 3.31986 3.95836 4.20381 4.28941 4.33611 4.38579 4.75578 4.88011 4.96383 5.00659 5.12596 5.14717 5.15546 5.22797 5.25220 5.25942 5.33815 5.35591 5.40330 5.52235 5.59047 5.69662 5.74929 5.85785 5.86165 6.00140 6.09393 6.19045 6.40906 7.21871 7.30346 7.44810 7.59005 7.72248 7.90981 8.49388 8.70506 8.95920 9.38462 10.89500 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.049725 B = 0.002370 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.958016 B =11812.566087 C =12088.244530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.123 4.123 7 C -0.077 4.077 8 H 0.086 0.914 9 C -0.107 4.107 10 C 0.460 3.540 11 O -0.510 6.510 12 O -0.331 6.331 13 C 0.049 3.951 14 C 0.499 3.501 15 O -0.535 6.535 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.544 4.544 19 H 0.065 0.935 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.078 0.922 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.393 0.607 40 H 0.029 0.971 41 H 0.030 0.970 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 -6.231 -23.953 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.160 4.160 7 C -0.096 4.096 8 H 0.104 0.896 9 C -0.145 4.145 10 C 0.303 3.697 11 O -0.398 6.398 12 O -0.246 6.246 13 C -0.029 4.029 14 C 0.282 3.718 15 O -0.412 6.412 16 N -0.357 5.357 17 C 0.130 3.870 18 C -0.583 4.583 19 H 0.083 0.917 20 C -0.141 4.141 21 N -0.522 5.522 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.226 0.774 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.859 -5.542 -23.869 25.733 hybrid contribution 0.367 -1.056 1.055 1.537 sum -7.492 -6.598 -22.814 24.902 Atomic orbital electron populations 1.21899 0.94825 1.01888 1.01742 1.21834 0.95789 0.99544 0.94015 0.90614 1.22254 0.99419 0.97083 0.97035 1.22333 0.99462 0.97983 0.96409 1.22621 0.96756 1.00685 0.95934 1.21951 0.98524 0.96176 0.92931 0.89568 1.21502 1.04032 0.98917 0.90001 1.23843 0.73895 0.87442 0.84527 1.90642 1.50348 1.15496 1.83327 1.86578 1.75697 1.40630 1.21698 1.22839 1.01946 0.93405 0.84682 1.19917 0.79322 0.88930 0.83632 1.90707 1.53502 1.14908 1.82091 1.46370 1.65264 1.11183 1.12899 1.19179 0.96159 0.89651 0.81972 1.21245 1.46541 0.93278 0.97203 0.91716 1.24962 0.95145 0.95086 0.98859 1.69985 1.46342 1.08118 1.27737 0.86332 0.78308 0.80143 0.81961 1.19606 1.20763 1.20756 0.92521 0.92663 0.92550 0.91865 0.91772 0.91797 0.91692 0.91682 0.90379 0.87528 0.87472 0.88616 0.88599 0.77431 0.95261 0.95253 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.85 37.16 0.33 -0.59 16 2 C -0.09 -0.63 3.08 -89.39 -0.28 -0.91 16 3 H 0.08 0.48 7.84 -51.93 -0.41 0.07 16 4 C -0.12 -0.78 6.47 -25.50 -0.16 -0.95 16 5 C -0.12 -0.90 6.83 -25.07 -0.17 -1.08 16 6 C -0.12 -1.08 5.69 -24.74 -0.14 -1.22 16 7 C -0.08 -0.65 1.99 -88.96 -0.18 -0.83 16 8 H 0.09 0.82 7.67 -51.93 -0.40 0.42 16 9 C -0.11 -0.98 5.17 -27.88 -0.14 -1.12 16 10 C 0.46 5.98 7.76 36.01 0.28 6.26 16 11 O -0.51 -7.38 14.36 -18.74 -0.27 -7.65 16 12 O -0.33 -5.20 9.76 -45.91 -0.45 -5.65 16 13 C 0.05 0.75 5.94 36.01 0.21 0.96 16 14 C 0.50 10.06 7.91 -10.98 -0.09 9.97 16 15 O -0.53 -13.14 16.50 -14.11 -0.23 -13.37 16 16 N -0.71 -14.67 5.55 -61.47 -0.34 -15.02 16 17 C 0.25 6.57 5.43 -5.20 -0.03 6.54 16 18 C -0.54 -14.59 9.28 -34.44 -0.32 -14.91 16 19 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.88 -25.84 13.29 55.43 0.74 -25.10 16 22 Si 0.91 20.68 29.54 -169.99 -5.02 15.66 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.39 7.68 -51.93 -0.40 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.56 8.00 -51.93 -0.42 0.14 16 34 H 0.08 0.82 7.16 -51.93 -0.37 0.45 16 35 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.11 0.86 8.06 -51.93 -0.42 0.44 16 37 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 38 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 39 H 0.39 6.85 8.32 -40.82 -0.34 6.51 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -32.75 350.34 -8.01 -40.76 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.93 Total: 1.31 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.78 Total: 3.77 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.40 Total: -40.12 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.95 Total: -26.66 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.75 -8.01 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769189609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.769 kcal (2) G-P(sol) polarization free energy of solvation -32.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds