Wall clock time and date at job start Tue Mar 31 2020 05:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47466 * 2 1 4 4 H 1.09008 * 109.46924 * 304.99832 * 3 2 1 5 5 C 1.50699 * 109.47186 * 185.00058 * 3 2 1 6 6 H 1.08004 * 120.00067 * 239.99740 * 5 3 2 7 7 C 1.37881 * 119.99943 * 60.00086 * 5 3 2 8 8 N 1.31512 * 120.00131 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99733 * 179.97438 * 7 5 3 10 10 H 1.48492 * 109.47165 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46809 * 120.00098 * 9 7 5 12 12 H 1.48498 * 109.46962 * 239.99692 * 9 7 5 13 13 O 1.45196 * 109.47094 * 64.99969 * 3 2 1 14 14 C 1.34228 * 116.99930 * 270.00180 * 13 3 2 15 15 O 1.20824 * 120.00012 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99912 * 180.02562 * 14 13 3 17 17 H 1.09002 * 109.47476 * 59.99696 * 16 14 13 18 18 C 1.53006 * 109.47157 * 299.99511 * 16 14 13 19 19 C 1.52998 * 109.47141 * 180.02562 * 18 16 14 20 20 C 1.52992 * 109.47302 * 60.00000 * 19 18 16 21 21 C 1.52998 * 109.47451 * 300.00160 * 20 19 18 22 22 H 1.08998 * 109.46889 * 180.02562 * 21 20 19 23 23 C 1.50706 * 109.46708 * 299.99708 * 21 20 19 24 24 N 1.34773 * 120.00081 * 299.72691 * 23 21 20 25 25 O 1.21283 * 119.99503 * 119.99964 * 23 21 20 26 26 C 1.52998 * 109.47322 * 59.99853 * 21 20 19 27 27 H 1.08997 * 109.47216 * 300.00143 * 1 2 3 28 28 H 1.09001 * 109.46514 * 60.00081 * 1 2 3 29 29 H 1.09002 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46922 * 239.99677 * 2 1 3 31 31 H 1.08998 * 109.46888 * 120.00263 * 2 1 3 32 32 H 0.97001 * 119.99537 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46461 * 59.99932 * 18 16 14 34 34 H 1.09002 * 109.47078 * 300.00428 * 18 16 14 35 35 H 1.09002 * 109.47204 * 300.00007 * 19 18 16 36 36 H 1.09000 * 109.46662 * 180.02562 * 19 18 16 37 37 H 1.09005 * 109.47280 * 179.97438 * 20 19 18 38 38 H 1.09002 * 109.46985 * 59.99873 * 20 19 18 39 39 H 0.96998 * 120.00525 * 359.97438 * 24 23 21 40 40 H 0.97000 * 119.99521 * 180.02562 * 24 23 21 41 41 H 1.09002 * 109.47200 * 59.99673 * 26 21 20 42 42 H 1.09000 * 109.46986 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5420 1.4441 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8810 -1.3818 10 1 6.5988 1.5459 -0.1943 11 1 6.4970 -0.5178 -1.4630 12 1 6.3991 1.6164 -2.6103 13 8 1.6560 2.0916 1.2407 14 6 0.4728 2.7254 1.2559 15 8 -0.2187 2.7377 0.2652 16 6 0.0076 3.4225 2.5083 17 1 0.7247 4.1969 2.7809 18 6 -0.1029 2.4062 3.6467 19 6 -0.5758 3.1139 4.9181 20 6 -1.9443 3.7507 4.6683 21 6 -1.8339 4.7669 3.5300 22 1 -2.8089 5.2209 3.3524 23 6 -0.8429 5.8379 3.9071 24 7 -1.0566 6.5997 4.9981 25 8 0.1444 6.0173 3.2260 26 6 -1.3611 4.0593 2.2586 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8293 -0.0611 -2.9500 33 1 0.8721 1.9523 3.8243 34 1 -0.8200 1.6319 3.3741 35 1 0.1410 3.8885 5.1908 36 1 -0.6541 2.3899 5.7291 37 1 -2.2815 4.2545 5.5743 38 1 -2.6611 2.9761 4.3956 39 1 -1.8484 6.4591 5.5404 40 1 -0.4189 7.2892 5.2406 41 1 -2.0778 3.2847 1.9859 42 1 -1.2820 4.7835 1.4477 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084342.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:33 Heat of formation + Delta-G solvation = -157.550280 kcal Electronic energy + Delta-G solvation = -23659.004059 eV Core-core repulsion = 20216.786294 eV Total energy + Delta-G solvation = -3442.217765 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73006 -39.30730 -37.03367 -35.54080 -33.97613 -33.38984 -31.42450 -31.03175 -30.76564 -27.19678 -24.20768 -23.84392 -22.84442 -21.65221 -20.44212 -19.49749 -19.17842 -17.41064 -16.94467 -16.48340 -16.38267 -15.86214 -15.26751 -14.79283 -14.77448 -14.22973 -14.09176 -13.82195 -13.09688 -12.87864 -12.73791 -12.40085 -12.19875 -12.13731 -11.76407 -11.40443 -11.31416 -11.11466 -11.05754 -10.90291 -10.86346 -10.58281 -10.52115 -10.19806 -10.16442 -9.86081 -9.70214 -9.63536 -9.32510 -9.16056 -8.69172 -8.37249 -6.11037 -4.17134 2.53605 3.23035 3.28461 3.35137 3.37152 3.40826 3.82456 4.38863 4.57719 4.60036 4.62870 4.93022 5.16850 5.19965 5.21489 5.30323 5.40605 5.49059 5.59857 5.78001 5.88545 5.97677 6.09171 6.14459 6.22594 6.29607 6.36657 6.45011 6.48612 6.55280 6.65792 6.95731 7.06557 7.14946 7.25867 7.38791 7.70949 7.83910 8.07110 8.15740 8.26732 8.78045 9.04310 9.48076 10.95884 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025203 B = 0.004400 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.721694 B = 6362.195703 C = 6836.588983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.518 4.518 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.355 6.355 14 C 0.459 3.541 15 O -0.522 6.522 16 C -0.094 4.094 17 H 0.126 0.874 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.109 4.109 22 H 0.101 0.899 23 C 0.520 3.480 24 N -0.859 5.859 25 O -0.529 6.529 26 C -0.082 4.082 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.031 0.969 30 H 0.107 0.893 31 H 0.040 0.960 32 H 0.264 0.736 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.399 0.601 40 H 0.399 0.601 41 H 0.078 0.922 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.625 7.573 16.428 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.167 3.833 4 H 0.063 0.937 5 C -0.556 4.556 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.208 1.208 13 O -0.272 6.272 14 C 0.302 3.698 15 O -0.413 6.413 16 C -0.113 4.113 17 H 0.143 0.857 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.130 4.130 22 H 0.119 0.881 23 C 0.305 3.695 24 N -0.423 5.423 25 O -0.404 6.404 26 C -0.120 4.120 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.125 0.875 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.227 0.773 40 H 0.230 0.770 41 H 0.096 0.904 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.181 7.413 15.357 20.956 hybrid contribution 0.716 0.180 0.088 0.744 sum -11.465 7.593 15.445 20.680 Atomic orbital electron populations 1.21853 0.98443 0.98791 1.00800 1.21999 0.92595 0.99466 1.03201 1.20623 0.94910 0.88713 0.79047 0.93664 1.21115 0.89879 1.38478 1.06123 0.91347 1.24881 0.99126 0.94884 0.95099 1.69907 1.35174 1.38156 1.09482 0.86257 0.84130 0.77786 0.78203 1.19496 1.20775 1.20792 1.86465 1.34520 1.62457 1.43715 1.23260 0.80573 0.76483 0.89447 1.90571 1.55795 1.58720 1.36203 1.21262 0.99228 0.98801 0.91972 0.85654 1.21505 1.02857 0.97217 0.93276 1.21577 0.96210 1.00088 0.97897 1.21582 0.98623 0.98109 0.96588 1.21423 0.98794 0.94947 0.97855 0.88130 1.20724 0.86889 0.81934 0.79961 1.43921 1.28836 1.39610 1.29935 1.90741 1.29556 1.68861 1.51284 1.21187 0.95561 0.99909 0.95348 0.94868 0.92876 0.94983 0.87467 0.94099 0.92562 0.90214 0.91579 0.91878 0.91179 0.91595 0.90335 0.77307 0.77026 0.90379 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.57 37.16 0.32 -2.88 16 2 C -0.13 -3.46 5.49 -26.73 -0.15 -3.60 16 3 C 0.22 6.10 2.25 -27.89 -0.06 6.04 16 4 H 0.05 1.40 7.16 -51.92 -0.37 1.03 16 5 C -0.52 -15.09 8.90 -34.44 -0.31 -15.40 16 6 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 7 C 0.06 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.89 -25.82 11.30 55.43 0.63 -25.19 16 9 Si 0.91 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 O -0.36 -8.93 9.71 -39.25 -0.38 -9.31 16 14 C 0.46 10.19 5.71 36.01 0.21 10.39 16 15 O -0.52 -12.65 13.12 -18.75 -0.25 -12.90 16 16 C -0.09 -1.58 2.33 -91.76 -0.21 -1.79 16 17 H 0.13 2.29 5.51 -51.93 -0.29 2.01 16 18 C -0.11 -1.53 5.14 -26.73 -0.14 -1.67 16 19 C -0.12 -1.20 5.70 -26.74 -0.15 -1.35 16 20 C -0.11 -0.86 5.36 -26.74 -0.14 -1.00 16 21 C -0.11 -1.05 3.01 -91.77 -0.28 -1.33 16 22 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 23 C 0.52 5.76 5.91 -10.98 -0.06 5.70 16 24 N -0.86 -5.64 8.77 31.22 0.27 -5.37 16 25 O -0.53 -8.56 14.49 5.56 0.08 -8.48 16 26 C -0.08 -1.16 3.66 -26.73 -0.10 -1.25 16 27 H 0.03 0.71 6.06 -51.93 -0.31 0.40 16 28 H 0.05 1.26 7.80 -51.93 -0.40 0.86 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.11 2.97 5.95 -51.92 -0.31 2.66 16 31 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 33 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.67 7.22 -51.93 -0.37 0.30 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.33 7.58 -51.93 -0.39 -0.07 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 1.32 8.27 -40.82 -0.34 0.98 16 40 H 0.40 2.38 8.93 -40.82 -0.36 2.02 16 41 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.08 1.25 8.06 -51.93 -0.42 0.83 16 LS Contribution 329.27 15.07 4.96 4.96 Total: -1.00 -34.38 329.27 -7.38 -41.76 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -6.50 Total: 4.32 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.17 Total: -6.48 kcal Atomic # 7 Polarization: -31.46 SS G_CDS: 0.90 Total: -30.56 kcal Atomic # 8 Polarization: -30.15 SS G_CDS: -0.55 Total: -30.70 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.38 -7.38 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084342.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.789 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds