Wall clock time and date at job start Tue Mar 31 2020 05:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 H 1.09001 * 109.47211 * 304.99784 * 3 2 1 5 5 C 1.50702 * 109.47098 * 184.99701 * 3 2 1 6 6 H 1.07998 * 120.00186 * 240.00088 * 5 3 2 7 7 C 1.37884 * 119.99667 * 59.99852 * 5 3 2 8 8 N 1.31510 * 120.00323 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99672 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47434 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47247 * 120.00131 * 9 7 5 12 12 H 1.48502 * 109.47306 * 240.00020 * 9 7 5 13 13 O 1.45203 * 109.47313 * 64.99987 * 3 2 1 14 14 C 1.34229 * 116.99579 * 269.99744 * 13 3 2 15 15 O 1.20819 * 120.00199 * 0.02562 * 14 13 3 16 16 C 1.50706 * 119.99505 * 179.97438 * 14 13 3 17 17 H 1.09001 * 109.46797 * 60.00347 * 16 14 13 18 18 C 1.52996 * 109.47306 * 300.00127 * 16 14 13 19 19 C 1.53002 * 109.46891 * 179.97438 * 18 16 14 20 20 C 1.52997 * 109.46978 * 60.00410 * 19 18 16 21 21 C 1.53006 * 109.47164 * 299.99874 * 20 19 18 22 22 H 1.08998 * 109.46505 * 299.99708 * 21 20 19 23 23 C 1.50697 * 109.47239 * 180.02562 * 21 20 19 24 24 N 1.34777 * 120.00369 * 59.99719 * 23 21 20 25 25 O 1.21288 * 120.00038 * 239.99878 * 23 21 20 26 26 C 1.52997 * 109.47127 * 59.99836 * 21 20 19 27 27 H 1.09000 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.47289 * 300.00473 * 1 2 3 29 29 H 1.09001 * 109.46953 * 59.99754 * 1 2 3 30 30 H 1.08998 * 109.47037 * 239.99671 * 2 1 3 31 31 H 1.08999 * 109.46575 * 119.99869 * 2 1 3 32 32 H 0.96994 * 120.00198 * 180.02562 * 8 7 5 33 33 H 1.08992 * 109.47554 * 299.99873 * 18 16 14 34 34 H 1.09004 * 109.47108 * 60.00124 * 18 16 14 35 35 H 1.09002 * 109.47097 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.47142 * 300.00176 * 19 18 16 37 37 H 1.09001 * 109.47375 * 59.99908 * 20 19 18 38 38 H 1.09000 * 109.47140 * 179.97438 * 20 19 18 39 39 H 0.97003 * 119.99640 * 0.02562 * 24 23 21 40 40 H 0.96993 * 120.00253 * 180.02562 * 24 23 21 41 41 H 1.09002 * 109.47153 * 180.02562 * 26 21 20 42 42 H 1.09001 * 109.46832 * 60.00321 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6524 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3373 -2.1733 9 14 6.0050 0.8798 -1.3810 10 1 6.5988 1.5450 -0.1936 11 1 6.4962 -0.5193 -1.4625 12 1 6.4001 1.6154 -2.6090 13 8 1.6559 2.0917 1.2407 14 6 0.4728 2.7255 1.2558 15 8 -0.2191 2.7370 0.2655 16 6 0.0070 3.4217 2.5087 17 1 0.7240 4.1959 2.7820 18 6 -0.1039 2.4047 3.6462 19 6 -0.5761 3.1117 4.9182 20 6 -1.9444 3.7494 4.6692 21 6 -1.8335 4.7665 3.5315 22 1 -1.1163 5.5404 3.8048 23 6 -3.1811 5.3951 3.2866 24 7 -3.7964 6.0763 4.2734 25 8 -3.7120 5.2881 2.2013 26 6 -1.3612 4.0595 2.2595 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 3.8293 -0.0612 -2.9498 33 1 -0.8208 1.6306 3.3729 34 1 0.8710 1.9506 3.8240 35 1 -0.6547 2.3872 5.7288 36 1 0.1412 3.8856 5.1914 37 1 -2.6617 2.9755 4.3960 38 1 -2.2810 4.2528 5.5755 39 1 -3.3717 6.1622 5.1413 40 1 -4.6639 6.4805 4.1159 41 1 -1.2818 4.7842 1.4492 42 1 -2.0786 3.2856 1.9864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084344.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:36 Heat of formation + Delta-G solvation = -163.538020 kcal Electronic energy + Delta-G solvation = -23248.574624 eV Core-core repulsion = 19806.097212 eV Total energy + Delta-G solvation = -3442.477412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45617 -39.45699 -37.43476 -35.63207 -33.92437 -33.45550 -31.50677 -31.07101 -30.87312 -27.25193 -24.26664 -23.95804 -22.89174 -21.27466 -20.38922 -19.76924 -19.21382 -17.80977 -16.93182 -16.58644 -16.46410 -15.53581 -15.36822 -15.08888 -14.76403 -14.37346 -14.10858 -13.73873 -13.37312 -12.92949 -12.80513 -12.63538 -12.39707 -11.91887 -11.54729 -11.38335 -11.33522 -11.18319 -11.10534 -10.93910 -10.80761 -10.68580 -10.56367 -10.40166 -10.24417 -9.90824 -9.86091 -9.73977 -9.41317 -9.26941 -8.74978 -8.42405 -6.15679 -4.22586 2.49652 3.10212 3.24677 3.26429 3.31974 3.36717 3.75474 4.34151 4.48322 4.56950 4.64644 4.98878 5.07596 5.10827 5.16308 5.22541 5.30967 5.39520 5.49473 5.74566 5.83519 5.88243 6.00817 6.10929 6.18302 6.27596 6.32216 6.36683 6.45204 6.51895 6.57391 6.92082 7.02899 7.10421 7.22195 7.32968 7.65616 7.78552 8.01316 8.09912 8.20589 8.70630 8.95827 9.42722 10.91120 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.029618 B = 0.003808 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.139326 B = 7351.153420 C = 7520.780943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.046 0.954 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.887 5.887 9 Si 0.910 3.090 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.282 1.282 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.513 6.513 16 C -0.081 4.081 17 H 0.102 0.898 18 C -0.113 4.113 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.107 4.107 22 H 0.100 0.900 23 C 0.520 3.480 24 N -0.859 5.859 25 O -0.535 6.535 26 C -0.083 4.083 27 H 0.032 0.968 28 H 0.032 0.968 29 H 0.053 0.947 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.400 0.600 40 H 0.399 0.601 41 H 0.079 0.921 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.750 7.890 17.122 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.064 0.936 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.737 3.263 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.208 1.208 13 O -0.272 6.272 14 C 0.296 3.704 15 O -0.403 6.403 16 C -0.101 4.101 17 H 0.120 0.880 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.129 4.129 22 H 0.118 0.882 23 C 0.305 3.695 24 N -0.423 5.423 25 O -0.410 6.410 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.228 0.772 40 H 0.229 0.771 41 H 0.097 0.903 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.081 7.584 15.839 20.249 hybrid contribution 0.715 0.185 0.081 0.743 sum -9.366 7.768 15.920 20.038 Atomic orbital electron populations 1.21861 0.98368 0.98904 1.00844 1.22002 0.92621 0.99407 1.03236 1.20650 0.94921 0.88771 0.78882 0.93615 1.21089 0.89774 1.38769 1.06161 0.91339 1.24893 0.99171 0.94847 0.95108 1.69901 1.35248 1.37926 1.09466 0.86249 0.84029 0.77844 0.78184 1.19505 1.20746 1.20796 1.86459 1.34341 1.62473 1.43913 1.23173 0.80802 0.77079 0.89325 1.90622 1.55477 1.58219 1.35942 1.20995 0.98112 0.98479 0.92485 0.88038 1.21533 1.03129 0.97300 0.93115 1.21525 0.95959 1.00061 0.97643 1.21578 0.98833 0.98078 0.96435 1.21362 0.94223 0.98929 0.98340 0.88182 1.20714 0.87399 0.77526 0.83855 1.43911 1.24496 1.58112 1.15806 1.90788 1.66612 1.59201 1.24422 1.21196 0.94891 1.00619 0.95417 0.94919 0.94883 0.92830 0.87449 0.94063 0.92480 0.91363 0.89932 0.91079 0.91328 0.91138 0.91543 0.77185 0.77066 0.90279 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.57 37.16 0.32 -2.88 16 2 C -0.13 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.91 2.25 -27.88 -0.06 5.84 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.61 8.90 -34.44 -0.31 -14.92 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.31 11.29 55.43 0.63 -24.69 16 9 Si 0.91 21.12 29.54 -169.99 -5.02 16.09 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 O -0.36 -8.38 9.71 -39.25 -0.38 -8.76 16 14 C 0.45 9.43 5.71 36.01 0.21 9.63 16 15 O -0.51 -12.18 13.12 -18.74 -0.25 -12.43 16 16 C -0.08 -1.19 2.63 -91.77 -0.24 -1.44 16 17 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 18 C -0.11 -1.38 5.14 -26.73 -0.14 -1.52 16 19 C -0.11 -0.95 5.92 -26.73 -0.16 -1.11 16 20 C -0.11 -0.87 5.10 -26.73 -0.14 -1.00 16 21 C -0.11 -1.05 2.52 -91.77 -0.23 -1.28 16 22 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 23 C 0.52 5.78 7.43 -10.99 -0.08 5.69 16 24 N -0.86 -5.52 8.77 31.22 0.27 -5.25 16 25 O -0.53 -8.75 16.82 5.55 0.09 -8.65 16 26 C -0.08 -1.18 3.07 -26.73 -0.08 -1.26 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 29 H 0.05 1.28 7.80 -51.93 -0.40 0.87 16 30 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.33 7.57 -51.93 -0.39 -0.06 16 39 H 0.40 1.28 8.25 -40.82 -0.34 0.95 16 40 H 0.40 2.25 8.93 -40.82 -0.36 1.89 16 41 H 0.08 1.28 8.06 -51.93 -0.42 0.86 16 42 H 0.08 1.30 8.06 -51.93 -0.42 0.88 16 LS Contribution 335.77 15.07 5.06 5.06 Total: -1.00 -34.06 335.77 -7.43 -41.49 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.68 Total: 3.30 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: -1.15 Total: -6.17 kcal Atomic # 7 Polarization: -30.83 SS G_CDS: 0.90 Total: -29.93 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.53 Total: -29.84 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.06 -7.43 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084344.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.045 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds