Wall clock time and date at job start Tue Mar 31 2020 05:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46888 * 2 1 4 4 H 1.08997 * 109.47460 * 304.99765 * 3 2 1 5 5 C 1.50703 * 109.46791 * 184.99533 * 3 2 1 6 6 H 1.08002 * 120.00026 * 239.99650 * 5 3 2 7 7 C 1.37879 * 119.99767 * 60.00688 * 5 3 2 8 8 N 1.31513 * 120.00014 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99642 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47376 * 59.99686 * 9 7 5 11 11 H 1.48504 * 109.46824 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47347 * 299.99057 * 9 7 5 13 13 O 1.45196 * 109.47329 * 64.99915 * 3 2 1 14 14 C 1.34238 * 116.99979 * 269.99657 * 13 3 2 15 15 O 1.20820 * 119.99769 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00088 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.47730 * 300.00545 * 16 14 13 18 18 C 1.53002 * 109.47106 * 60.00207 * 16 14 13 19 19 C 1.52997 * 109.47415 * 179.97438 * 18 16 14 20 20 C 1.53006 * 109.47164 * 300.00027 * 19 18 16 21 21 C 1.52999 * 109.46626 * 59.99702 * 20 19 18 22 22 H 1.09000 * 109.47160 * 60.00369 * 21 20 19 23 23 C 1.50706 * 109.46957 * 180.02562 * 21 20 19 24 24 N 1.34782 * 119.99786 * 300.00070 * 23 21 20 25 25 O 1.21278 * 120.00184 * 119.99966 * 23 21 20 26 26 C 1.52996 * 109.47240 * 180.02562 * 16 14 13 27 27 H 1.08998 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47479 * 300.00389 * 1 2 3 29 29 H 1.09003 * 109.46925 * 59.99941 * 1 2 3 30 30 H 1.08989 * 109.47357 * 239.99894 * 2 1 3 31 31 H 1.08995 * 109.46767 * 119.99412 * 2 1 3 32 32 H 0.97003 * 119.99741 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46986 * 59.99785 * 18 16 14 34 34 H 1.09001 * 109.47601 * 300.00508 * 18 16 14 35 35 H 1.09001 * 109.46922 * 180.02562 * 19 18 16 36 36 H 1.09000 * 109.47140 * 59.99976 * 19 18 16 37 37 H 1.08993 * 109.46955 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47050 * 300.00004 * 20 19 18 39 39 H 0.97002 * 119.99886 * 0.02562 * 24 23 21 40 40 H 0.97001 * 119.99701 * 179.97438 * 24 23 21 41 41 H 1.09000 * 109.47054 * 300.00339 * 26 16 14 42 42 H 1.09001 * 109.46997 * 60.00072 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1237 6 1 4.1472 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3368 -2.1728 9 14 6.0050 0.8813 -1.3816 10 1 6.5975 0.1474 -0.2347 11 1 6.3979 0.2168 -2.6502 12 1 6.4995 2.2816 -1.3820 13 8 1.6558 2.0917 1.2406 14 6 0.4726 2.7255 1.2558 15 8 -0.2193 2.7370 0.2654 16 6 0.0068 3.4217 2.5085 17 1 -0.0722 2.6972 3.3190 18 6 1.0132 4.5084 2.8923 19 6 0.5400 5.2157 4.1638 20 6 -0.8283 5.8532 3.9137 21 6 -1.8346 4.7664 3.5299 22 1 -1.9139 4.0421 4.3406 23 6 -3.1822 5.3943 3.2830 24 7 -3.7990 6.0757 4.2688 25 8 -3.7117 5.2863 2.1973 26 6 -1.3618 4.0585 2.2593 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.8294 -0.0617 -2.9495 33 1 1.0922 5.2330 2.0819 34 1 1.9881 4.0545 3.0700 35 1 1.2567 5.9902 4.4369 36 1 0.4607 4.4914 4.9744 37 1 -1.1652 6.3574 4.8194 38 1 -0.7490 6.5775 3.1031 39 1 -3.3753 6.1623 5.1371 40 1 -4.6662 6.4801 4.1097 41 1 -1.2833 4.7830 1.4487 42 1 -2.0786 3.2840 1.9861 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787084346.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:38 Heat of formation + Delta-G solvation = -163.434752 kcal Electronic energy + Delta-G solvation = -23206.164643 eV Core-core repulsion = 19763.691709 eV Total energy + Delta-G solvation = -3442.472934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.45126 -39.45417 -37.43689 -35.62751 -33.92371 -33.45571 -31.52911 -31.01272 -30.88229 -27.26129 -24.26098 -23.94719 -22.89335 -21.24508 -20.39252 -19.76261 -19.22536 -17.80749 -16.93024 -16.58502 -16.43494 -15.53912 -15.41672 -15.08667 -14.69823 -14.38075 -14.07710 -13.75734 -13.41709 -12.98299 -12.76304 -12.51912 -12.37297 -12.01589 -11.50097 -11.36984 -11.32043 -11.19079 -11.11999 -10.91308 -10.79515 -10.65509 -10.60590 -10.38969 -10.25384 -9.90541 -9.85678 -9.74322 -9.42851 -9.26155 -8.75817 -8.41623 -6.15164 -4.22336 2.49777 3.10096 3.26343 3.27633 3.31447 3.34133 3.75633 4.34115 4.48853 4.57839 4.65362 4.99569 5.08754 5.11865 5.16534 5.23330 5.31848 5.39757 5.50367 5.75439 5.84640 5.89284 6.01670 6.12674 6.20369 6.27583 6.34180 6.36713 6.45605 6.51814 6.57523 6.92116 7.02932 7.10536 7.22170 7.33004 7.65359 7.78679 8.01452 8.10014 8.20754 8.70481 8.95529 9.42825 10.91520 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028218 B = 0.003965 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.018723 B = 7060.605951 C = 7697.893769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.046 0.954 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.910 3.090 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.356 6.356 14 C 0.454 3.546 15 O -0.513 6.513 16 C -0.081 4.081 17 H 0.100 0.900 18 C -0.114 4.114 19 C -0.114 4.114 20 C -0.112 4.112 21 C -0.107 4.107 22 H 0.100 0.900 23 C 0.520 3.480 24 N -0.859 5.859 25 O -0.535 6.535 26 C -0.084 4.084 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.400 0.600 40 H 0.399 0.601 41 H 0.079 0.921 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.715 9.820 16.384 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.169 3.831 4 H 0.064 0.936 5 C -0.559 4.559 6 H 0.086 0.914 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.737 3.263 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.272 6.272 14 C 0.296 3.704 15 O -0.403 6.403 16 C -0.100 4.100 17 H 0.118 0.882 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.149 4.149 21 C -0.128 4.128 22 H 0.118 0.882 23 C 0.305 3.695 24 N -0.423 5.423 25 O -0.410 6.410 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.229 0.771 41 H 0.098 0.902 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.046 9.511 15.090 20.000 hybrid contribution 0.651 0.063 0.152 0.672 sum -8.395 9.574 15.243 19.861 Atomic orbital electron populations 1.21860 0.98371 0.98929 1.00815 1.22012 0.92623 0.99449 1.03260 1.20636 0.94887 0.88743 0.78882 0.93608 1.21007 0.89759 1.38958 1.06176 0.91442 1.24887 0.99149 0.94831 0.95103 1.69887 1.35418 1.37778 1.09478 0.86356 0.84015 0.78444 0.77440 1.19974 1.21069 1.20018 1.86458 1.34363 1.62439 1.43937 1.23176 0.80830 0.76944 0.89436 1.90622 1.55436 1.58337 1.35859 1.20988 0.96002 0.97836 0.95183 0.88164 1.21538 0.98741 0.96997 0.97867 1.21527 0.95815 0.99947 0.97887 1.21580 0.94824 0.96948 1.01594 1.21352 0.91815 0.98725 1.00943 0.88221 1.20716 0.87220 0.77654 0.83903 1.43915 1.24464 1.58140 1.15813 1.90786 1.66791 1.59098 1.24339 1.21188 0.94590 1.00577 0.95794 0.94886 0.94960 0.92793 0.87413 0.94060 0.92368 0.91256 0.89840 0.91052 0.91381 0.91551 0.91105 0.77185 0.77068 0.90181 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.57 37.16 0.32 -2.90 16 2 C -0.14 -3.42 5.49 -26.73 -0.15 -3.57 16 3 C 0.22 5.93 2.25 -27.88 -0.06 5.87 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.62 8.90 -34.44 -0.31 -14.93 16 6 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.32 11.29 55.43 0.63 -24.70 16 9 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 O -0.36 -8.39 9.71 -39.28 -0.38 -8.77 16 14 C 0.45 9.43 5.71 36.00 0.21 9.64 16 15 O -0.51 -12.19 13.12 -18.74 -0.25 -12.43 16 16 C -0.08 -1.19 2.63 -91.77 -0.24 -1.43 16 17 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 18 C -0.11 -1.43 5.14 -26.73 -0.14 -1.56 16 19 C -0.11 -0.97 5.92 -26.73 -0.16 -1.13 16 20 C -0.11 -0.88 5.10 -26.73 -0.14 -1.02 16 21 C -0.11 -1.05 2.52 -91.80 -0.23 -1.28 16 22 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 23 C 0.52 5.79 7.43 -10.98 -0.08 5.70 16 24 N -0.86 -5.53 8.77 31.22 0.27 -5.26 16 25 O -0.53 -8.75 16.82 5.56 0.09 -8.66 16 26 C -0.08 -1.19 3.06 -26.76 -0.08 -1.27 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 29 H 0.05 1.29 7.80 -51.93 -0.40 0.88 16 30 H 0.11 2.95 5.95 -51.94 -0.31 2.64 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.12 8.11 -51.93 -0.42 0.69 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.40 1.29 8.25 -40.82 -0.34 0.95 16 40 H 0.40 2.26 8.93 -40.82 -0.36 1.89 16 41 H 0.08 1.31 8.05 -51.93 -0.42 0.89 16 42 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 LS Contribution 335.75 15.07 5.06 5.06 Total: -1.00 -33.99 335.75 -7.43 -41.42 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.68 Total: 3.51 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.15 Total: -6.25 kcal Atomic # 7 Polarization: -30.86 SS G_CDS: 0.90 Total: -29.96 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.53 Total: -29.86 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.99 -7.43 -41.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787084346.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.017 kcal (2) G-P(sol) polarization free energy of solvation -33.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds