Wall clock time and date at job start Tue Mar 31 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.52170 * 2 1 4 4 C 1.53045 * 109.49367 * 239.92305 * 2 1 3 5 5 C 1.53042 * 109.53378 * 178.68124 * 4 2 1 6 6 C 1.52758 * 109.38342 * 61.24017 * 5 4 2 7 7 N 1.46931 * 109.01107 * 305.58555 * 6 5 4 8 8 C 1.34773 * 120.63143 * 233.58706 * 7 6 5 9 9 O 1.21349 * 119.99640 * 181.68880 * 8 7 6 10 10 C 1.49429 * 119.99975 * 1.68830 * 8 7 6 11 11 O 1.21254 * 120.00398 * 353.08130 * 10 8 7 12 12 O 1.34545 * 120.00144 * 173.08269 * 10 8 7 13 13 C 1.45200 * 117.00310 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.47062 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47007 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47151 * 179.97438 * 15 14 13 17 17 H 1.08008 * 120.00072 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00350 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99640 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00424 * 179.72653 * 18 16 15 21 21 H 1.48500 * 109.47187 * 60.00262 * 20 18 16 22 22 H 1.48499 * 109.47406 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47301 * 300.00623 * 20 18 16 24 24 C 1.46928 * 118.73390 * 53.30587 * 7 6 5 25 25 H 1.08998 * 109.47435 * 299.91843 * 1 2 3 26 26 H 1.08998 * 109.47431 * 59.91798 * 1 2 3 27 27 H 1.09002 * 109.47039 * 179.91605 * 1 2 3 28 28 H 1.09000 * 109.46027 * 298.69917 * 4 2 1 29 29 H 1.08997 * 109.46383 * 58.66213 * 4 2 1 30 30 H 1.09002 * 109.49434 * 181.31395 * 5 4 2 31 31 H 1.08997 * 109.49708 * 301.41395 * 5 4 2 32 32 H 1.09000 * 109.51247 * 185.70337 * 6 5 4 33 33 H 1.09004 * 109.43497 * 65.42391 * 6 5 4 34 34 H 1.09002 * 109.46474 * 60.00003 * 13 12 10 35 35 H 1.08995 * 109.46926 * 299.99781 * 13 12 10 36 36 H 1.09005 * 109.46894 * 60.00362 * 14 13 12 37 37 H 1.09002 * 109.47407 * 300.00531 * 14 13 12 38 38 H 1.09005 * 109.46941 * 60.00460 * 15 14 13 39 39 H 1.08997 * 109.47519 * 300.00036 * 15 14 13 40 40 H 0.97004 * 119.99787 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.58235 * 66.43882 * 24 7 6 42 42 H 1.09001 * 109.58584 * 186.71604 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0407 -0.7230 -1.2485 5 6 3.5708 -0.6949 -1.2661 6 6 4.1055 -1.4215 -0.0334 7 7 3.5046 -0.8291 1.1695 8 6 4.2812 -0.3856 2.1778 9 8 3.7719 0.0735 3.1789 10 6 5.7692 -0.4593 2.0628 11 8 6.2771 -1.0303 1.1213 12 8 6.5456 0.1079 3.0039 13 6 7.9826 -0.0033 2.8279 14 6 8.6941 0.6970 3.9873 15 6 10.2083 0.5793 3.8021 16 6 10.9091 1.2696 4.9438 17 1 10.3322 1.7444 5.7237 18 6 12.2867 1.2942 4.9933 19 7 12.9892 0.7156 4.0439 20 14 13.1555 2.1564 6.4044 21 1 12.7617 1.5236 7.6888 22 1 14.6251 2.0411 6.2254 23 1 12.7702 3.5906 6.4206 24 6 2.0413 -0.7238 1.2495 25 1 -0.3634 0.5125 0.8907 26 1 -0.3634 0.5151 -0.8892 27 1 -0.3633 -1.0277 -0.0015 28 1 1.6967 -1.7572 -1.2354 29 1 1.6581 -0.2244 -2.1390 30 1 3.9333 -1.1896 -2.1673 31 1 3.9158 0.3389 -1.2542 32 1 5.1895 -1.3159 0.0098 33 1 3.8412 -2.4774 -0.0917 34 1 8.2709 0.4672 1.8878 35 1 8.2661 -1.0556 2.8096 36 1 8.4058 0.2269 4.9276 37 1 8.4105 1.7493 4.0053 38 1 10.4969 1.0491 2.8618 39 1 10.4915 -0.4730 3.7845 40 1 13.9585 0.7332 4.0786 41 1 1.6053 -1.7217 1.2979 42 1 1.7637 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805560865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:25 Heat of formation + Delta-G solvation = -124.191671 kcal Electronic energy + Delta-G solvation = -22113.102503 eV Core-core repulsion = 18672.331276 eV Total energy + Delta-G solvation = -3440.771227 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29642 -39.63085 -37.99188 -36.92789 -34.16486 -33.90046 -32.23334 -31.74634 -28.02222 -27.20929 -26.40310 -24.37157 -22.81891 -22.63003 -20.97595 -20.42988 -19.81687 -17.82627 -17.42309 -16.87095 -16.60388 -16.13143 -15.63790 -15.31125 -14.75405 -14.63921 -14.48221 -14.12890 -13.81988 -13.55088 -13.39395 -13.02443 -12.61623 -12.28753 -12.26346 -12.24315 -11.93123 -11.70607 -11.45810 -11.23477 -10.99342 -10.88491 -10.77498 -10.69220 -10.63826 -10.52907 -9.78298 -9.70208 -9.38543 -9.19252 -9.07045 -8.39661 -6.04827 -4.07819 1.03361 1.80302 2.86608 3.25361 3.32785 3.36827 3.39985 4.22360 4.34230 4.38693 4.45279 4.49337 4.68589 4.93032 5.00432 5.13751 5.17881 5.30780 5.31223 5.35537 5.38908 5.41195 5.46166 5.58666 5.62102 5.70883 5.73762 5.77561 5.89932 5.99170 6.03145 6.39113 6.48900 6.73517 6.80138 6.93902 7.30309 7.57325 7.67675 7.71413 7.93161 8.34005 8.98013 9.56599 11.06563 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.043989 B = 0.002593 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.373387 B =10797.320716 C =11194.140467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.043 3.957 7 N -0.580 5.580 8 C 0.531 3.469 9 O -0.493 6.493 10 C 0.460 3.540 11 O -0.480 6.480 12 O -0.323 6.323 13 C 0.063 3.937 14 C -0.110 4.110 15 C 0.025 3.975 16 C -0.522 4.522 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C 0.114 3.886 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.157 0.843 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.904 -4.526 -11.937 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.155 4.155 5 C -0.172 4.172 6 C -0.077 4.077 7 N -0.315 5.315 8 C 0.314 3.686 9 O -0.367 6.367 10 C 0.300 3.700 11 O -0.370 6.370 12 O -0.236 6.236 13 C -0.009 4.009 14 C -0.148 4.148 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.008 4.008 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.173 0.827 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.769 -4.462 -11.676 26.855 hybrid contribution 0.614 0.299 0.469 0.829 sum -23.155 -4.162 -11.207 26.059 Atomic orbital electron populations 1.21762 0.94050 1.02165 1.02279 1.21521 0.96164 1.00289 0.94727 0.90532 1.21641 0.95640 1.00781 0.97422 1.21841 0.95644 1.01633 0.98107 1.23259 1.05237 0.96733 0.82475 1.47902 1.06725 1.59050 1.17868 1.18934 0.85513 0.80040 0.84161 1.90806 1.73914 1.42919 1.29082 1.23399 0.89751 0.76213 0.80614 1.90354 1.75286 1.40354 1.30958 1.86677 1.22168 1.68327 1.46416 1.23783 0.72519 1.02489 1.02121 1.21813 0.98053 0.99759 0.95180 1.19051 0.86616 0.97739 0.97767 1.21132 0.91336 1.35355 1.08228 0.92408 1.25024 0.97639 0.95537 0.96247 1.69954 1.06398 1.44035 1.33025 0.86590 0.78323 0.80160 0.82551 1.20145 1.21267 1.20156 1.21850 0.77881 1.01481 0.99554 0.92220 0.92138 0.92381 0.91659 0.91557 0.90281 0.91538 0.82747 0.91217 0.90838 0.90806 0.91827 0.91855 0.96169 0.96151 0.92824 0.90734 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.20 37.16 0.34 -0.43 16 2 C -0.11 -0.76 2.87 -90.50 -0.26 -1.02 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -0.74 5.17 -26.69 -0.14 -0.88 16 5 C -0.13 -1.01 6.06 -26.83 -0.16 -1.17 16 6 C 0.04 0.41 6.20 -3.93 -0.02 0.39 16 7 N -0.58 -6.39 2.98 -173.55 -0.52 -6.90 16 8 C 0.53 7.57 7.76 -11.60 -0.09 7.48 16 9 O -0.49 -8.28 16.39 -7.52 -0.12 -8.40 16 10 C 0.46 7.09 7.94 35.40 0.28 7.37 16 11 O -0.48 -7.26 12.81 -19.08 -0.24 -7.51 16 12 O -0.32 -5.64 10.09 -45.06 -0.45 -6.09 16 13 C 0.06 1.13 5.47 37.16 0.20 1.34 16 14 C -0.11 -2.29 5.53 -26.73 -0.15 -2.43 16 15 C 0.03 0.64 4.97 -27.88 -0.14 0.51 16 16 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 17 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.65 13.29 55.43 0.74 -25.92 16 20 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C 0.11 0.99 5.71 -3.71 -0.02 0.97 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.16 1.76 3.79 -56.97 -0.22 1.54 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.94 7.01 -51.93 -0.36 0.58 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -31.01 344.98 -7.88 -38.89 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -6.88 Total: -4.48 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -0.57 Total: -1.34 kcal Atomic # 7 Polarization: -33.04 SS G_CDS: 0.22 Total: -32.82 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.82 Total: -22.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.01 -7.88 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805560865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.304 kcal (2) G-P(sol) polarization free energy of solvation -31.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds