Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.52366 * 2 1 4 4 C 1.53036 * 109.49863 * 120.08235 * 2 1 3 5 5 C 1.53043 * 109.53912 * 181.31287 * 4 2 1 6 6 C 1.53188 * 109.31100 * 298.63871 * 5 4 2 7 7 N 1.46923 * 108.78029 * 54.63524 * 6 5 4 8 8 C 1.34770 * 120.63299 * 126.36766 * 7 6 5 9 9 O 1.21355 * 120.00245 * 188.66531 * 8 7 6 10 10 C 1.49432 * 120.00213 * 8.65952 * 8 7 6 11 11 O 1.21254 * 119.99726 * 6.76706 * 10 8 7 12 12 O 1.34541 * 120.00320 * 186.76327 * 10 8 7 13 13 C 1.45208 * 117.00073 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.46995 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47269 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47569 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99294 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00269 * 179.72428 * 16 15 14 19 19 N 1.31515 * 119.99678 * 0.27666 * 18 16 15 20 20 Si 1.86793 * 120.00075 * 180.27712 * 18 16 15 21 21 H 1.48497 * 109.47157 * 90.00040 * 20 18 16 22 22 H 1.48506 * 109.47113 * 209.99915 * 20 18 16 23 23 H 1.48502 * 109.47292 * 329.99831 * 20 18 16 24 24 C 1.46925 * 118.73779 * 306.64166 * 7 6 5 25 25 H 1.09003 * 109.46932 * 299.92043 * 1 2 3 26 26 H 1.09005 * 109.47130 * 59.91293 * 1 2 3 27 27 H 1.08994 * 109.47136 * 179.91538 * 1 2 3 28 28 H 1.09006 * 109.46001 * 61.29463 * 4 2 1 29 29 H 1.08999 * 109.45192 * 301.32851 * 4 2 1 30 30 H 1.08996 * 109.49821 * 178.68499 * 5 4 2 31 31 H 1.09001 * 109.52167 * 58.60660 * 5 4 2 32 32 H 1.08998 * 109.58605 * 294.83950 * 6 5 4 33 33 H 1.09007 * 109.69825 * 174.49311 * 6 5 4 34 34 H 1.08996 * 109.46923 * 59.99880 * 13 12 10 35 35 H 1.09001 * 109.46548 * 300.00028 * 13 12 10 36 36 H 1.09005 * 109.47554 * 60.00222 * 14 13 12 37 37 H 1.09000 * 109.47168 * 300.00266 * 14 13 12 38 38 H 1.08996 * 109.47144 * 59.99892 * 15 14 13 39 39 H 1.09000 * 109.47300 * 300.00255 * 15 14 13 40 40 H 0.96998 * 119.99865 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.59217 * 173.14122 * 24 7 6 42 42 H 1.09006 * 109.58496 * 293.57032 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2483 5 6 3.5709 -0.6951 1.2659 6 6 4.1052 -1.4267 0.0306 7 7 3.5046 -0.8291 -1.1697 8 6 4.2811 -0.3856 -2.1780 9 8 3.7892 0.2457 -3.0903 10 6 5.7479 -0.6710 -2.1727 11 8 6.2199 -1.4033 -1.3293 12 8 6.5447 -0.1155 -3.1036 13 6 7.9591 -0.4376 -3.0378 14 6 8.6989 0.2812 -4.1678 15 6 10.1892 -0.0576 -4.0982 16 6 10.9178 0.6499 -5.2116 17 1 10.3724 1.2787 -5.8998 18 6 12.2816 0.4994 -5.3480 19 7 12.9457 -0.2659 -4.5096 20 14 13.1858 1.3825 -6.7234 21 1 13.6309 2.7166 -6.2465 22 1 14.3686 0.5828 -7.1315 23 1 12.2767 1.5503 -7.8856 24 6 2.0416 -0.7186 -1.2473 25 1 -0.3633 0.5126 0.8907 26 1 -0.3634 0.5152 -0.8892 27 1 -0.3633 -1.0276 -0.0015 28 1 1.6967 -1.7573 1.2352 29 1 1.6583 -0.2243 2.1388 30 1 3.9335 -1.1898 2.1669 31 1 3.9165 0.3386 1.2543 32 1 3.8375 -2.4818 0.0866 33 1 5.1898 -1.3269 -0.0151 34 1 8.0918 -1.5143 -3.1434 35 1 8.3610 -0.1143 -2.0776 36 1 8.5661 1.3579 -4.0619 37 1 8.2969 -0.0416 -5.1282 38 1 10.3224 -1.1342 -4.2040 39 1 10.5908 0.2655 -3.1378 40 1 13.9050 -0.3721 -4.6058 41 1 1.7645 -0.1495 -2.1346 42 1 1.6020 -1.7149 -1.2977 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805560866.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = -128.435430 kcal Electronic energy + Delta-G solvation = -22090.312618 eV Core-core repulsion = 18649.357368 eV Total energy + Delta-G solvation = -3440.955250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.26021 -39.63327 -37.98141 -36.88047 -34.17262 -33.91314 -32.24567 -31.73999 -28.01926 -27.20772 -26.40039 -24.37611 -22.81515 -22.65443 -20.92335 -20.43282 -19.79198 -17.79163 -17.44748 -16.87689 -16.56628 -16.10564 -15.70988 -15.21781 -14.79185 -14.64401 -14.47571 -14.11791 -13.77813 -13.55002 -13.40040 -13.04482 -12.59660 -12.29696 -12.25233 -12.21655 -11.93406 -11.67957 -11.47220 -11.24307 -11.02553 -10.92460 -10.79054 -10.68823 -10.61739 -10.50944 -9.79524 -9.75602 -9.44482 -9.18091 -9.07489 -8.39826 -6.04815 -4.07664 1.04522 1.81375 2.85979 3.25154 3.31233 3.37382 3.41505 4.23030 4.33825 4.38829 4.45008 4.48538 4.65176 4.90967 4.99417 5.12398 5.17503 5.29259 5.31361 5.34108 5.39691 5.41737 5.47204 5.57014 5.60605 5.69773 5.73677 5.75963 5.90785 5.97777 6.02905 6.33417 6.49602 6.69661 6.78451 6.94236 7.29795 7.57884 7.68051 7.72356 7.93420 8.34287 8.98448 9.56791 11.06643 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.045598 B = 0.002573 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.910024 B =10879.698763 C =11278.746451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.117 4.117 5 C -0.136 4.136 6 C 0.066 3.934 7 N -0.583 5.583 8 C 0.532 3.468 9 O -0.492 6.492 10 C 0.457 3.543 11 O -0.482 6.482 12 O -0.324 6.324 13 C 0.064 3.936 14 C -0.110 4.110 15 C 0.025 3.975 16 C -0.521 4.521 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.115 3.885 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.262 0.738 41 H 0.096 0.904 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.068 -2.575 12.940 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.174 4.174 6 C -0.055 4.055 7 N -0.319 5.319 8 C 0.315 3.685 9 O -0.366 6.366 10 C 0.296 3.704 11 O -0.371 6.371 12 O -0.238 6.238 13 C -0.009 4.009 14 C -0.148 4.148 15 C -0.012 4.012 16 C -0.560 4.560 17 H 0.076 0.924 18 C -0.145 4.145 19 N -0.534 5.534 20 Si 0.723 3.277 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.007 4.007 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.115 0.885 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.942 -2.507 12.675 27.206 hybrid contribution 0.695 0.262 -0.486 0.888 sum -23.246 -2.246 12.190 26.344 Atomic orbital electron populations 1.21762 0.94027 1.02167 1.02294 1.21445 0.96186 1.00377 0.94720 0.90501 1.21631 0.95475 1.00842 0.97481 1.21956 0.95839 1.01603 0.98049 1.22885 1.03231 0.96929 0.82454 1.47867 1.06777 1.59534 1.17704 1.18979 0.85364 0.80768 0.83420 1.90805 1.73888 1.36523 1.35345 1.23346 0.89123 0.78182 0.79703 1.90548 1.76444 1.34510 1.35645 1.86669 1.22766 1.64910 1.49427 1.23765 0.73420 1.01406 1.02268 1.21808 0.97787 0.99802 0.95395 1.19056 0.86951 0.97409 0.97798 1.21170 0.92580 1.28860 1.13346 0.92355 1.25027 0.97719 0.95378 0.96359 1.69962 1.08175 1.38338 1.36936 0.86531 0.79287 0.79553 0.82281 1.20602 1.21194 1.19776 1.21761 0.77774 1.01446 0.99704 0.92135 0.92211 0.92375 0.91597 0.91506 0.90219 0.91465 0.90939 0.84534 0.90866 0.90893 0.91872 0.91833 0.96157 0.96170 0.92884 0.88533 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.20 37.16 0.34 -0.41 16 2 C -0.11 -0.74 2.86 -90.72 -0.26 -1.00 16 3 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.12 -0.71 5.17 -26.69 -0.14 -0.85 16 5 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 6 C 0.07 0.61 5.99 -3.71 -0.02 0.59 16 7 N -0.58 -6.37 2.98 -173.54 -0.52 -6.89 16 8 C 0.53 7.59 7.73 -11.60 -0.09 7.50 16 9 O -0.49 -8.25 16.40 -7.54 -0.12 -8.37 16 10 C 0.46 7.11 7.88 35.40 0.28 7.39 16 11 O -0.48 -7.43 12.97 -19.08 -0.25 -7.67 16 12 O -0.32 -5.72 10.09 -45.05 -0.45 -6.17 16 13 C 0.06 1.15 5.47 37.15 0.20 1.36 16 14 C -0.11 -2.30 5.53 -26.74 -0.15 -2.44 16 15 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 16 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 20 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.11 0.98 5.70 -3.93 -0.02 0.96 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.14 1.53 4.31 -54.79 -0.24 1.30 16 34 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.10 0.93 7.00 -51.93 -0.36 0.57 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -31.27 345.36 -7.89 -39.16 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -6.90 Total: -4.85 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -0.57 Total: -1.04 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.22 Total: -32.85 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.83 Total: -22.22 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.27 -7.89 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805560866.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.271 kcal (2) G-P(sol) polarization free energy of solvation -31.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds