Wall clock time and date at job start Tue Mar 31 2020 06:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46941 * 2 1 4 4 C 1.46505 * 120.00224 * 263.89084 * 3 2 1 5 5 C 1.50696 * 109.47424 * 270.00398 * 4 3 2 6 6 H 1.08005 * 119.99739 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00190 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99978 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99875 * 359.97438 * 7 5 4 10 10 H 1.48511 * 109.46675 * 90.00535 * 9 7 5 11 11 H 1.48499 * 109.47152 * 210.00109 * 9 7 5 12 12 H 1.48490 * 109.47288 * 330.00577 * 9 7 5 13 13 C 1.34772 * 120.00285 * 83.89471 * 3 2 1 14 14 O 1.21279 * 120.00785 * 184.41609 * 13 3 2 15 15 C 1.50704 * 119.99713 * 4.41235 * 13 3 2 16 16 H 1.09003 * 110.04069 * 357.65304 * 15 13 3 17 17 C 1.54365 * 110.09673 * 119.12512 * 15 13 3 18 18 C 1.54922 * 104.19968 * 95.72597 * 17 15 13 19 19 C 1.54961 * 102.78916 * 37.75077 * 18 17 15 20 20 C 1.53529 * 110.05959 * 236.19478 * 15 13 3 21 21 O 1.43349 * 110.17765 * 121.33135 * 20 15 13 22 22 C 1.44888 * 104.69685 * 214.56502 * 21 20 15 23 23 C 1.54949 * 101.77252 * 35.72008 * 22 21 20 24 24 O 1.42977 * 110.37692 * 0.56365 * 20 15 13 25 25 H 1.08996 * 109.47012 * 300.00019 * 1 2 3 26 26 H 1.08998 * 109.47203 * 60.00449 * 1 2 3 27 27 H 1.09000 * 109.47222 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46829 * 239.99985 * 2 1 3 29 29 H 1.08993 * 109.47284 * 120.00032 * 2 1 3 30 30 H 1.09000 * 109.47100 * 30.00378 * 4 3 2 31 31 H 1.08999 * 109.46925 * 149.99960 * 4 3 2 32 32 H 0.96997 * 119.99819 * 179.97438 * 8 7 5 33 33 H 1.09000 * 110.48361 * 214.39995 * 17 15 13 34 34 H 1.08992 * 110.48899 * 337.04503 * 17 15 13 35 35 H 1.09004 * 110.74589 * 279.42613 * 18 17 15 36 36 H 1.09003 * 110.90956 * 156.15212 * 18 17 15 37 37 H 1.09001 * 110.50428 * 203.68160 * 19 18 17 38 38 H 1.09002 * 110.61621 * 81.05287 * 19 18 17 39 39 H 1.09004 * 110.96652 * 277.60400 * 22 21 20 40 40 H 1.08991 * 111.00103 * 153.85770 * 22 21 20 41 41 H 1.08998 * 110.68754 * 206.26713 * 23 22 21 42 42 H 1.08992 * 110.83641 * 83.14334 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3898 2.0269 -1.2615 5 6 3.8490 1.7774 -1.5430 6 1 4.4407 1.1963 -0.8511 7 6 4.4290 2.2917 -2.6832 8 7 5.7027 2.0744 -2.9285 9 14 3.4057 3.2973 -3.8794 10 1 3.4682 4.7318 -3.4999 11 1 3.9402 3.1253 -5.2542 12 1 1.9955 2.8345 -3.8351 13 6 2.1259 2.0579 1.1605 14 8 2.4532 3.2257 1.1536 15 6 1.8393 1.3636 2.4670 16 1 1.5213 0.3374 2.2827 17 6 3.0976 1.3754 3.3611 18 6 2.8972 2.6041 4.2831 19 6 1.3749 2.5721 4.5712 20 6 0.7499 2.1219 3.2385 21 8 -0.3685 1.2611 3.4894 22 6 -1.5258 2.1293 3.4099 23 6 -1.1088 3.1097 2.2849 24 8 0.3114 3.2597 2.4918 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7879 1.6149 -2.0716 31 1 2.2124 3.0997 -1.1866 32 1 6.1106 2.4359 -3.7308 33 1 3.1546 0.4608 3.9514 34 1 3.9953 1.4958 2.7548 35 1 3.1732 3.5235 3.7666 36 1 3.4673 2.4952 5.2058 37 1 1.0171 3.5647 4.8446 38 1 1.1487 1.8550 5.3604 39 1 -1.6818 2.6582 4.3502 40 1 -2.4165 1.5681 3.1279 41 1 -1.6179 4.0666 2.3997 42 1 -1.3120 2.6823 1.3031 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000807014924.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:32 Heat of formation + Delta-G solvation = -118.240840 kcal Electronic energy + Delta-G solvation = -24598.350326 eV Core-core repulsion = 21157.837147 eV Total energy + Delta-G solvation = -3440.513179 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03814 -38.83782 -36.16014 -35.19447 -34.86650 -32.68461 -30.37951 -29.91658 -29.37742 -27.36745 -26.35209 -23.34111 -22.96247 -22.75950 -20.90952 -20.47386 -18.15196 -17.27752 -16.83972 -16.65562 -16.47112 -15.62534 -15.43824 -14.86929 -14.41561 -14.09477 -13.85291 -13.54056 -13.37826 -13.03532 -12.80771 -12.58354 -12.52153 -12.29614 -12.16116 -11.82571 -11.73647 -11.44222 -11.29136 -11.03711 -10.99093 -10.84226 -10.67987 -10.63756 -10.38623 -10.17281 -10.08884 -9.49795 -9.48124 -8.72720 -8.54606 -7.57807 -6.04959 -4.02935 3.28734 3.32454 3.38175 3.40311 3.48190 3.90361 4.05386 4.43429 4.44841 4.55935 4.68562 4.81213 5.01349 5.04401 5.22239 5.30851 5.31475 5.36501 5.45972 5.50306 5.55835 5.62771 5.72013 5.74611 5.76749 5.87819 5.91784 5.93405 6.06135 6.12833 6.19772 6.29677 6.48130 6.50862 6.78871 7.04360 7.20713 7.48574 7.67047 8.39062 8.53166 8.98224 9.16706 9.56448 11.08514 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021701 B = 0.005884 C = 0.005485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.969285 B = 4757.307335 C = 5103.796219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.527 4.527 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.530 3.470 14 O -0.520 6.520 15 C -0.127 4.127 16 H 0.105 0.895 17 C -0.106 4.106 18 C -0.118 4.118 19 C -0.140 4.140 20 C 0.270 3.730 21 O -0.370 6.370 22 C 0.016 3.984 23 C 0.013 3.987 24 O -0.345 6.345 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.799 -3.206 13.887 20.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.316 3.684 14 O -0.395 6.395 15 C -0.149 4.149 16 H 0.123 0.877 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.178 4.178 20 C 0.192 3.808 21 O -0.290 6.290 22 C -0.060 4.060 23 C -0.063 4.063 24 O -0.265 6.265 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.325 -2.588 13.688 19.982 hybrid contribution -0.637 0.402 -0.788 1.090 sum -14.962 -2.187 12.900 19.876 Atomic orbital electron populations 1.22281 0.96966 1.01520 1.02136 1.21428 0.93250 0.84232 1.02852 1.47901 1.64117 1.13078 1.07761 1.19605 0.96292 0.94063 0.80319 1.21366 0.93304 1.34292 1.07546 0.90796 1.24851 0.94818 0.95693 0.97659 1.69901 1.11055 1.45788 1.27009 0.86855 0.80881 0.81467 0.80525 1.19931 1.21125 1.19120 1.19618 0.77909 0.86793 0.84090 1.90639 1.46393 1.15909 1.86589 1.22369 0.96244 1.01147 0.95123 0.87723 1.22228 0.96585 0.98588 0.97009 1.22440 0.94328 0.99545 0.99219 1.22903 0.97033 1.02180 0.95640 1.23564 0.86640 0.80004 0.90600 1.89218 1.15241 1.32534 1.92041 1.24378 0.90510 0.92466 0.98666 1.24244 0.82623 1.00524 0.98951 1.89180 1.20955 1.41903 1.74465 0.92729 0.92507 0.92087 0.89737 0.91537 0.95548 0.94588 0.92635 0.90769 0.90129 0.89879 0.91144 0.90415 0.89890 0.90767 0.87614 0.88514 0.90780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.06 37.16 0.37 -1.99 16 2 C 0.11 1.79 5.74 -4.04 -0.02 1.77 16 3 N -0.60 -12.88 2.47 -175.06 -0.43 -13.31 16 4 C 0.22 5.52 4.23 -5.19 -0.02 5.50 16 5 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 6 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -28.07 13.96 55.43 0.77 -27.30 16 9 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 10 H -0.27 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.53 11.40 5.60 -10.99 -0.06 11.34 16 14 O -0.52 -13.26 15.22 -15.97 -0.24 -13.51 16 15 C -0.13 -2.12 2.48 -90.78 -0.23 -2.35 16 16 H 0.10 1.60 5.10 -51.93 -0.27 1.33 16 17 C -0.11 -1.61 6.31 -25.00 -0.16 -1.76 16 18 C -0.12 -1.64 6.91 -24.68 -0.17 -1.82 16 19 C -0.14 -1.82 6.28 -25.21 -0.16 -1.98 16 20 C 0.27 4.08 1.32 -25.97 -0.03 4.05 16 21 O -0.37 -4.92 10.83 -59.03 -0.64 -5.56 16 22 C 0.02 0.16 7.94 38.19 0.30 0.47 16 23 C 0.01 0.16 8.08 38.19 0.31 0.47 16 24 O -0.34 -5.89 8.48 -66.76 -0.57 -6.46 16 25 H 0.05 0.76 7.68 -51.93 -0.40 0.37 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 29 H 0.07 0.99 6.14 -51.93 -0.32 0.68 16 30 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 31 H 0.04 0.98 6.79 -51.93 -0.35 0.63 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.39 7.84 -51.93 -0.41 0.99 16 35 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.98 8.06 -51.93 -0.42 0.56 16 38 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 334.06 15.07 5.03 5.03 Total: -1.00 -35.32 334.06 -7.81 -43.13 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.76 Total: 0.59 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.31 Total: -0.04 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.34 Total: -40.60 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.45 Total: -25.52 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.32 -7.81 -43.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807014924.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.108 kcal (2) G-P(sol) polarization free energy of solvation -35.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds